mRNA_L-elsbetiae_contig4872.12786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4872.12786.1
Unique NamemRNA_L-elsbetiae_contig4872.12786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4872.12786.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.890e-8
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   52 MAQRELQGRLQVAEQQVRMYREAMEHLIAAPPTGPPKQAASRTTPAAEAATAAGRN 219
            MA RELQGRLQ+AEQQVRMYREAMEHLIAAP    P  + SR +P +  A  A  N
Sbjct:    1 MAYRELQGRLQLAEQQVRMYREAMEHLIAAPSAAYPAASQSRASPISTTAGVAQEN 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4872.12786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE7.890e-864.29APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4872contigL-elsbetiae_contig4872:8144..12254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.1e-07
Seed eggNOG ortholog2880.D7FJA3
KEGG koko:K08334,ko:K19683
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to nitrogen starvation
EggNOG OGsKOG2751@1,KOG2751@2759
Ec32 ortholog descriptionBeclin
Ec32 orthologEc-12_008290.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04131
Exons2
Model size394
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816480.5924072-CDS-L-elsbetiae_contig4872:8143..84371622816480.5924072-CDS-L-elsbetiae_contig4872:8143..8437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4872 8144..8437 -
1691683590.4421525-CDS-L-elsbetiae_contig4872:8143..84371691683590.4421525-CDS-L-elsbetiae_contig4872:8143..8437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4872 8144..8437 -
1622816480.6055763-CDS-L-elsbetiae_contig4872:12155..122541622816480.6055763-CDS-L-elsbetiae_contig4872:12155..12254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4872 12156..12254 -
1691683590.4545662-CDS-L-elsbetiae_contig4872:12155..122541691683590.4545662-CDS-L-elsbetiae_contig4872:12155..12254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4872 12156..12254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4872.12786.1prot_L-elsbetiae_contig4872.12786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4872 8144..12254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4872.12786.1

>prot_L-elsbetiae_contig4872.12786.1 ID=prot_L-elsbetiae_contig4872.12786.1|Name=mRNA_L-elsbetiae_contig4872.12786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
RGEGANLSSEIEAPATDMAQRELQGRLQVAEQQVRMYREAMEHLIAAPPT
GPPKQAASRTTPAAEAATAAGRNGSFREISGGEKTASGSAGGSAGGDAEP
AGTGGGGHDRAPDVGGVASRPARNCSDGDTG
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mRNA from alignment at L-elsbetiae_contig4872:8144..12254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4872.12786.1 ID=mRNA_L-elsbetiae_contig4872.12786.1|Name=mRNA_L-elsbetiae_contig4872.12786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4111bp|location=Sequence derived from alignment at L-elsbetiae_contig4872:8144..12254- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCGAAGGGGCGAATCTCTCGAGCGAGATCGAGGCGCCAGCAACTGA
CATGGCCCAGCGAGAGCTTCAGGGACGACTTCAGGTTGCTGAGCAGCAGG
TGAGGGTGTATGTGTGTCGAAATATTATATTATACCAGCAGGTTTCCCCG
CAATACCCGACTGCGCACTCCGATTGCGACTGCTGGTGTGCTTCCGAATA
CTAGAGGGTCTAGGTGGTTTGCCCGTTTTTCCCACTTCCTCACTCAGAAA
ATTGGCTGAGGTTGTGGCCTTGAACACTCAGCGAAGGAGCGCTCTTCCAA
AGTAAAGTGACCCCTGCAGCGAAATGTGCGAAGAACGCAGCAGCAGACTC
TCCCTCTCCCTCGCCCGGCCTTGTCTCCTGTCTCTGTCTCTTGTCTCATC
TCTGTCTCTCTCGCTGTCTCCCTCCCTCTCTCGCCCCCCCCCCTCTTTCC
CCCCCCTCCCCTCATTTTCCCCTCTACGCCACTGGTGTTGCTCCGTGATA
CCTGGCTTTCAAACGATAAAAAGCAGAGCCCCACGCTGGACGAATTTTTC
ATTCGTTCTTACTCTCGTACATCGTACATACGAAGTTGATCTAGACGATG
TAATTCGTTCTTACTATATTGTAGCTCTCTGCGGTTTGTAGAGGAACCCT
TTTGTGGCAAAATATCCTTCATGGCAAGGAACCTCTAGTGCTAGCAATAG
ATGTGAAAATAAGTAAATACACACAACATGACCGGTCGAGCGCGGCCAAG
ACACCGAACACTACACGGTTCTACCAACACTACGATACACGGTCCAACCA
AACCCATACCAACCCAACCCAACCCAACCCAACCCCCAACTCAATGCAAC
CCAACCCCAACCACAAATCCAACCCACAACTCAGTCGTCAAGGCGGCCCC
AAAAGCCGCACCAAAACCCACAACTATAATTCTATCCGAAACTCTACCCC
AACTCAACCCAACGCCAACCCAAACCCGCAAACCAACCCCACAACAACGC
GATGTCCGGCCCGCAGGTCTCCTCTGCGATATTTTTCGAACACCCGCCCC
CGATCCCCGGGTGTCATGTTTTATTTTTTATTTTTTTATTGTTGTCTCTA
ACTCCAGCCGTATACCTTTGGGAGGGTACACACAGTGGCGTTGTAATCGA
GTGGTTTGTTTCTATCCCGGGCACTTGTATAGTGATATCTCCCCTGTTGC
TAATAACAGGCTCAACAAGACAGTATGGTTGGTGGTCATCTTGTGTATCG
GACCATACTCGTGGGAGGAGTAGATGTTGCATATGTGTGTGCCTGAGGAT
TGTGACGTATGTATGGATATGCGGCGGAATACGAATACGGTATATCTATG
TACGCCCGGTAGATGACCATTGTGGGTGTGTGTGTTCAACATTTCTCATC
TCTTTACTCTCTCGTTCTCTCTCCTTTATTTAGTCAACTCCCTTTCGGTG
TTGTCGAAGCAGGTGTGGTTGTCTTTTTTGTTTGTTTTTGGCACCCACAG
TCCCCAGATTACACACCGTCGTGCCACGCATACATGCATACCGCTTTGTA
GGACAGGCGGAGATCAACACTACTACTGCTGTAGAGTGTGGGCGCGTCGA
TCCCGGCCAGAAGCTGGGGTTATCGCAGCCAGTTACAGCTCAACAACACA
CACCCTGTGTGGGGCAGTACTTACAGCAGCCTCCTAGCAATCCTGGGGGT
CCGCTCACGCCTTGGGGGAAAACCCCCTTTACAGAAACAGCCTTTGTAGG
CAATGTGCAGCGTAGTTTACAGCAGCCTGCAGCCTACAAGCCGAGTCTCT
CCCCCCGACATATACAACAAAACCCGCTTTTGGGTGCGAGGAAATGTGTT
TTATTTGAATTTTGCGTCCCCCCCGACATATGTATACGACAAAACCCGCT
TTCGGCTGCGGGGAAATGTGTTTTTTTTATTTTATTTTGCGTTCTGGCTT
GGTTGCGCTTCGGCCCTCGTCGCGCGATGATCGAGGTTCCGCGTGACACC
AGGAGGGGAATGCTACTTCTGTTGTGCGTATGCGTATCGATTCCGGGCGA
CGAAAGCTGAGGCTTTCGCAGCGATTTATGCGCGTTAGCTGCCCACAGAC
CCCCGGGAGGGAAAGCCGCTGCGGGCACCTCGCCCAAAAAAAACACATAC
TTGGCTTTTCTGTGCGCACGCGGTTGCGCCGCCACGCCGCTACGCCTCCG
CGCTCGCCGCGCGACGCCCGCGCCTCCGCAGGGTGCGCGACCCGGCGCCC
ACCGGGTTGTGTGCCCTCCTCTCCCCGCTCGCGGCAGAAGCGGCGGCTGA
AACGGATCAACAGGAGTTTTGTTTTATATTTAGATACAGAAAAATAAAAA
GGTATGGAATCTCATGGAGTCTCGTCTCAATGTGGGTTCGGTTCCATTTT
TGATCAACTGTTTTTCCCTTCAGAAAGGTGTGCACATCGTATGTGTATAT
ATCGTAGGTGACACAAGATACCACACCCCCTGGACCGACTTTTAGAGCTC
CACTACTCCGTAACGAAGAGGGGGGCAGCACCAAACGACGCATTTTTGGG
CAGCCCTTGCCTAGATCTTTCCAACGCCGCCCTTTTTTGGCACGACACTC
TTCCTGCTGGGGAGGAACTGAGCTTTGAAAAAATGTCCGGGGGGTGTGAT
AGTGTCACCTACGGTATCATGTCCGAGATATCATACCAGTACGGTCGGGT
AACAGCTACGGCGTGCCTCCGCCACGCTTAGTCCCGTAGGCGATGGCAAG
TGTTTGAAGCGTATTTCCCGCCAACGGGACTGTCATCGTTGTCGGCCGCT
GATAGGCCGAGGCTCGTAGATTTCGGAGACGCGACCCTGCGCGTCGCTAG
CGCTGCGCGGCGGGCCGTCCCCACGGCGAGGGCACACGGGCTTGGCCCTC
GCAGTCGAGGGCTACCGGCAGGTGCAAATATTCCAGCGAGGCGAGGTCGA
CGGACCGAGAAATCCCCCAAAAAAGTAGGCTCTCGGCGCCTGAGCGAGAG
GCCCAAGGACTATAGTAGATAGGTTTACAAGTACACAGAGTTTCCGGGGT
GTCAAGCTGTGTTTGTTTGTTTGGGGTATCTGGCATTTTAACGCATCGGG
TACACTACTAAATATATATCTTCCGTTTATAGGTAAGAAACAGGTAGAAA
TACCTTGTCCGTGGTGTTGGAAGATATAATTAGGAGGTCAAAATTATAGT
TTTGGTTAGCGAGTGGGAAGCAGGCATGGGGGTGTCTGTCCTAGGCGGGA
TAACTTATTTCCAACATGTTCGGAGGGAGGCAGATTGCTGCAGCTTGACT
GTGTTCCGATGCTGTCGAGAAGGTGGCACGTGGTCATCGACGGTGTGACC
GCCGCGCTTGACCACCCATAACCCTACCAGGTGTCTACGCCATCTGCACC
TACATGGGAGGGGGTCCACCCCCTTTCTCCTGTGTGACCCCGGTTGGGGC
GTCTAGCTAGTGGTAGTGGAGTATGGGGGCCAGTGGGGCAGACGACGACT
ATGCCAATAATGGGAGGAGACGAAAAAAAAAAATGGGTGCCACAGCACGA
GCGATATCGTGAACTGGAGCAGCCGCGTGGAGTTTGCTCCCGGGACCTGA
AAAAAACTGAGCTCTTGGAAGTTGCAGCATTGCTGGCTGACTTACTTTCA
GATGCGACTGGCGGCATAGGAGTACACGCACGCGGAATCCCTCTAAATAG
TTCAGCACCAAAAACGAAGCCGTTCGTCGAAGGCCCCGAATAATGTCACA
CCGGGCCACACACACCCTCTACCACCACCGCCGTGCCTCCTCAACACGAT
ATCGCGCCTTCACGCAGGTCCGCATGTATCGAGAAGCCATGGAGCATCTC
ATCGCCGCCCCTCCAACAGGCCCGCCGAAGCAAGCGGCGAGCCGAACAAC
CCCTGCCGCAGAAGCGGCCACAGCAGCAGGCCGCAATGGAAGCTTCCGAG
AAATTTCCGGCGGGGAAAAAACTGCTTCCGGGAGCGCGGGAGGCTCGGCC
GGCGGAGACGCGGAACCTGCTGGAACAGGGGGGGGTGGTCACGACCGGGC
TCCTGATGTCGGAGGGGTCGCATCTAGGCCGGCAAGGAACTGTTCGGATG
GCGACACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4872:8144..12254-

>mRNA_L-elsbetiae_contig4872.12786.1 ID=mRNA_L-elsbetiae_contig4872.12786.1|Name=mRNA_L-elsbetiae_contig4872.12786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig4872:8144..12254- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCGAAGGGGCGAATCTCTCGAGCGAGATCGAGGCGCCAGCAACTGA
CATGGCCCAGCGAGAGCTTCAGGGACGACTTCAGGTTGCTGAGCAGCAGC
GGGGCGAAGGGGCGAATCTCTCGAGCGAGATCGAGGCGCCAGCAACTGAC
ATGGCCCAGCGAGAGCTTCAGGGACGACTTCAGGTTGCTGAGCAGCAGGT
CCGCATGTATCGAGAAGCCATGGAGCATCTCATCGCCGCCCCTCCAACAG
GCCCGCCGAAGCAAGCGGCGAGCCGAACAACCCCTGCCGCAGAAGCGGCC
ACAGCAGCAGGCCGCAATGGAAGCTTCCGAGAAATTTCCGGCGGGGAAAA
AACTGCTTCCGGGAGCGCGGGAGGCTCGGCCGGCGGAGACGCGGAACCTG
CTGGAACAGGGGGGGGTGGTCACGACCGGGCTCCTGATGTCGGAGGGGTC
GCATCTAGGCCGGCAAGGAACTGTTCGGATGGCGACACGGGGGTCCGCAT
GTATCGAGAAGCCATGGAGCATCTCATCGCCGCCCCTCCAACAGGCCCGC
CGAAGCAAGCGGCGAGCCGAACAACCCCTGCCGCAGAAGCGGCCACAGCA
GCAGGCCGCAATGGAAGCTTCCGAGAAATTTCCGGCGGGGAAAAAACTGC
TTCCGGGAGCGCGGGAGGCTCGGCCGGCGGAGACGCGGAACCTGCTGGAA
CAGGGGGGGGTGGTCACGACCGGGCTCCTGATGTCGGAGGGGTCGCATCT
AGGCCGGCAAGGAACTGTTCGGATGGCGACACGGGG
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