mRNA_L-elsbetiae_contig4871.12785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI) HSP 1 Score: 356 bits (913), Expect = 2.760e-100 Identity = 489/1193 (40.99%), Postives = 559/1193 (46.86%), Query Frame = 1 Query: 97 QVLTDESGTPPPPLPPSPLQSAPKPPSPLL-NGAARATA-KGRLHRATLEKRFSTSSGAXXXXXXXXXXXXXXXXXXXXXQSTLRPSVCSASPSTXXXXXXXXXXXXXXXXPACINTTSTGGDSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNGGGVSARKSL----PSWSSNSPGARARSRREIRRVSLSCGDPXXXXXXAESVRRGAHGISPSGSAGSLAGVRSQQRHLHLGHGSSSALTSSHLSHHSGPLSHRRAGSSGTGGCAERGKGG----RTGGVSPTTPKG-IAHNRRSAFSTSNSAALSPWS-------AAGAGLSGDRQSPSPRGRGAVTPRGTVAPRSSWGGGSPCSGGGWRSGPTTPNPSRGKGTNGTSQASLTPTNTGNGTPGRKSLGQQQ---ISPLTRAHRHLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSFSARPVEQHQLHHKSPKAQRPVDWWGRSELVGTGGGGGEAGQPPDSRKRHSGNPRGSTTRRPSASQGXXXXXXXXXESLLRPRPRSSSNLLSPAGLAALEREVRTRSAHAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPAASPSPPARDGGHGIKATTPRNXXXXXXXXXXXXXXXXXXXXXXXXVF--------------------------------------------DGPADHPAPLRRASEGTHVSAAAAAVAAANGARGIGSAAGLAGRSSAGGGATVQHLSTSARISPGIQALMANYGGAAKAXXXXXXXXXXXXXXXXXXXXXXXSKHGAVPVPSPEAPSPEAIPSPFAPAKPGVAGTAPGRAFATSPGSV--------------DGLAVTPTATARRETFSS--AGGGERGGSCPSAG-------------AMKVPTKAQQQR-----RSQHRNDAGEMRRALREHRESLKKALEAEAXXXXXXXXXXXXXXXEGR---GDVRTAVSSVQRGAAPVPSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQ------------GLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRY 3333 +V DE+ TPPP LPP PLQSAP+P SPLL NG + A K R R +L+K FSTSS A PS +A+P T NTT G+ XXXXXXXXXXXXXXXXXXXXXXXXXXX G ++ L P W+ + ++RE R S G + HGISPSGS GS + +RSQ+ LG SA T H S+ R GSS T GC ERGKGG R GGVSPTTPKG H+RRS FST+ A + R SPSPRGRG +TPRGT RSSWGG SPCSGGGWRSGPTTP R GT S + +P GTP RK G Q SPL++ HRH+ Q XXXXXXXXXXX ++R + HQ HHK PK+ + + ++ TG GQ D RKRH + S TRR S+SQ +S L RP SSS++ SP LAALEREV SA A XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX PADHPAPLRRA+ G V+AA +A A G GSAA G S G G QHLST ARISPGIQALMANY AA+ +P P+ A PS A G ATS G+ D TP F+S AGG R S AG A V T + Q RS+HRNDAGE+R A+R HR SLK AL+AEA R G R S +R + S KVFGVPL+ +M++ E +VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR+ALD+GK VCWDP + SL DVNMVAQLLKAFFRELPEPL+PF AY KVI IAKAAGVADARWVQAMK+ILWGIP ANYNCLR+ Sbjct: 159 EVQGDETWTPPP-LPPXPLQSAPRPASPLLRNGGTKGAAIKERSRRGSLDKNFSTSSAAASGTTMTTDPNT--------------PSPVAAAPCTASSASRVTILG---------NTTPASGNIDAGTAVKIRKTRSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGRGVITTAAELFCDSPCWALEASALATPTQRE-RSYSSFGGRAFASVPVGGNTIIENHGISPSGSTGSFSAMRSQRT---LG----SAPT--HFSY--------RRGSS-TSGCWERGKGGGASGRNGGVSPTTPKGGTRHHRRSGFSTTXXXXXXXXXXXXXXXMAVPGERASPRPSPSPRGRGVITPRGTSGQRSSWGG-SPCSGGGWRSGPTTP---RQNGTTTVSFVAPSP-----GTPARKGPGWQARGGSSPLSKGHRHVTQEQQFSSCPGGXXXXXXXXXXXACNAIAKTAAGSGWVRPGFQLAAVASEATAAERSEGRGKVA-------ASRKTKDHQHHHKYPKSPKMKNDGRAADTETTGSSLAGPGQGIDRRKRHL-HTFNSGTRRSSSSQHDQHHREQHPKSPLS-RPWSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVVAGGKSGAATGRATDKNGSAPADHPAPLRRAATGKTVAAAKSAWEKA----GEGSAAAAGGVKSRGAGKVAQHLSTLARISPGIQALMANYDAAARPVTPGMKTPLST---------------------TPAKPAGSAAPSKTA----ACGGXXXXXXXATSAGAASPDDREVFPAGAAKDAATPTPAVPQATSVFASTPAGGAMRDISVGVAGFASVFKSFEGRGAAAPVRTTPRSQXXXXXXRSKHRNDAGEIRCAMRGHRLSLKHALDAEAAAAAAGSAAKGQEVSVDRARDGRSRAGSSVQRRRSLSACSKDKVFGVPLIGLMQQGE----QVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPIDPIDEAEGSTGATDCASSSLMDVNMVAQLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRF 1257
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE) HSP 1 Score: 262 bits (669), Expect = 2.310e-68 Identity = 211/442 (47.74%), Postives = 238/442 (53.85%), Query Frame = 1 Query: 2128 PADHPAPLRRASEGTHVSAAAAAVAAANGARGIGSAAGLAGRSSAGGGATVQHLSTSARISPGIQALMANYGGAAKAXXXXXXXXXXXXXXXXXXXXXXXSKHGAVPVPSPEAPSPEAIPSPFAPAKPGVAGTAPGRAFATSPGSVDGLAVTPTATARRET--FSS--AGGGERGGSCPSAG-------------AMKVPTKAQQQRRS----------QHRNDAGEMRRALREHRESLKKALEAEAXXXXXXXXXXXXXXXEGRGDVRT-AVSSVQRGAAPVPSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQ------------GLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRY 3333 PADHPAPLRRAS G V AAV +A G G+ A G S G G QHLSTSARISPGIQALMANY AA +K PS G A F T+ + D A TPT+ + T F+S AGG R S AG A V T + Q +HRNDAGE+R A+R HR SLK ALEAEA E D R+ A SSVQR + S KVFGVPL+ +M++ E +VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR+ALD+GK VCWDP + SL DVNMVAQLLKAFFRELPEPL+PF KVI IAKAAGVADARWVQAMK+ILWGIP ANYNCLR+ Sbjct: 783 PADHPAPLRRASTGKSV----AAVKSAWEKAGEGNGAAAGGVKSRGAGKAAQHLSTSARISPGIQALMANYDAAAS-------YSRPVTPGIKTTLSTTPAKPAGSAAPSKTXXXXXXXXXXXXXXSAGAASPEDREVF-TAVAAKD--AATPTSAVPQATSVFASTPAGGAMRDISVGVAGFASVFKSFDGRGAAAPVRTTPRSQXXXXXXXXXXXXXKHRNDAGEIRCAMRGHRLSLKHALEAEAAAAAGSAAKGQEVAVERARDGRSRAESSVQRRRSLASSKNKVFGVPLIGLMQQGE----QVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPMDPIDETEESTKATVCASSSLMDVNMVAQLLKAFFRELPEPLVPF---SKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRF 1203
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.880e-27 Identity = 77/165 (46.67%), Postives = 101/165 (61.21%), Query Frame = 1 Query: 2857 AVSSVQRGAAPVPSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFG-LESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQG------LSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLR 3330 A ++V R P P V GV ++ + + E VPWV+ R + FL G L++VGLFR+AGDGV+ LR A++ + V WDPD G L L D +VAQLLKA+FRELPEP+IP+ Y +VI IA+AAG +WV AMK ILW +P+A Y LR Sbjct: 1048 AKAAVLRRGPPDPR-GPVMGVDIMAAVGQGE-----VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLR 1206
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: A0A6H5JD83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD83_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.620e-17 Identity = 78/150 (52.00%), Postives = 89/150 (59.33%), Query Frame = 1 Query: 754 HGISPSGSAGSLAGVRSQQRHLHLGHGSSSALTSSHLSHHSGPLSHRRAGSSGTGGCAERGKGG----RTGGVSPTTPKGIAHNRRSAFSTSNSAALSPWSAAGAGLSGDRQSP----SPRGRGAVTPRGTVAPRSSWGGGSPCSGGGWR 1179 HGISP GS GS + +RSQ+ +G SA T H S+ R GSS T GC ERGKGG R GGVSPTTPKG +H+RRS FSTS + G+R SP SPRGR +TP+GT RSSWGG SPCSGGGWR Sbjct: 180 HGISPPGSTGSFSAMRSQRP---IG----SAPT--HFSY--------RRGSS-TSGCWERGKGGPASGRNGGVSPTTPKGTSHHRRSGFSTSTXXXXXXXXXXXX-MPGERASPRPSPSPRGRAVITPKGTSGQRSSWGG-SPCSGGGWR 309
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: H2ZT76_LATCH (Rho-GAP domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZT76_LATCH) HSP 1 Score: 87.8 bits (216), Expect = 2.010e-15 Identity = 46/145 (31.72%), Postives = 77/145 (53.10%), Query Frame = 1 Query: 2899 PAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQGLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRY 3333 P K+FGVPL E + + + +P+V++ V +L+ FGLE GLFR++G L+E D G+ V DG D+ A LLK +FRELP +IP+ + + + + +A + +K +L +P ++Y+ +Y Sbjct: 35 PFKIFGVPL-ETLSQQQYMHSGIPFVVQDLVEYLTNFGLEKKGLFRVSGSASKIKTLKEKFDQGEKVNLIEDG--------DIESAASLLKLYFRELPTSVIPYSQHTEFLNVYQACNKDTDECTRKLKGLLGNLPPSHYSLFKY 170
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: UPI000BA816C1 (uncharacterized protein LOC106478506 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA816C1) HSP 1 Score: 83.2 bits (204), Expect = 2.350e-12 Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 1 Query: 2905 KVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQGLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRY 3333 K FGVPL ++ RN + VP+V+ R F+ + GL+ G+FR+ G+ L+ A D + +G DV VA LLK FF+ELPEP++P + + +A G + +K +L +P N+N L+Y Sbjct: 46 KTFGVPLEVLVERNSS-QSSVPFVVNRLCHFILENGLKQEGIFRIEGNAHLIDKLKTAFDQTGDALLETEG--------DVPSVASLLKLFFQELPEPVVPVSLCPEFLNAVRACGTWREECARRLKCLLENMPFVNFNLLKY 179
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: A0A6P9DK77_PANGU (rho GTPase-activating protein 8 n=10 Tax=Colubroidea TaxID=34989 RepID=A0A6P9DK77_PANGU) HSP 1 Score: 81.3 bits (199), Expect = 2.920e-12 Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 1 Query: 2893 PSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQGLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRYDM 3339 P P + FGV L + +N+ E +P V+ + V +L K GL++ GLFR + +++ + GKTV +D G D+++ +LKAF RELPEPL+ F YD++I I GV + V K I+ +P NY L++ M Sbjct: 220 PLPTQQFGVSLQYLSAKNKG--ELIPPVMNQTVAYLKKRGLKTEGLFRRSAGIKSIQEIQKLYNQGKTVDFDDYG--------DIHIPGVILKAFLRELPEPLLTFPMYDQIIQIT---GVESSLRVTRCKEIVHRLPEHNYVVLKFLM 355
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: H0WA70_CAVPO (Uncharacterized protein n=6 Tax=Hystricomorpha TaxID=33550 RepID=H0WA70_CAVPO) HSP 1 Score: 81.3 bits (199), Expect = 2.930e-12 Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 1 Query: 2893 PSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQGLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRY 3333 P P + FGV L + +N+ E +P VL+ V +L + GL + GLFR + +++ LD GK V +D G D+++ A +LK F RELP+PL+ F AY++V+ I V + V + IL +P NY LRY Sbjct: 187 PLPTQQFGVSLQYLKEKNQG--ELIPPVLRLTVTYLREKGLHTEGLFRRSASAQTVRLVQRLLDQGKPVNFDDYG--------DIHVPAVILKTFLRELPQPLLTFEAYERVMGITN---VESSLRVTHCRQILRSLPEHNYAVLRY 320
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: G5BKH6_HETGA (Rho GTPase-activating protein 8 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=G5BKH6_HETGA) HSP 1 Score: 81.6 bits (200), Expect = 6.810e-12 Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 1 Query: 2893 PSPAKVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWDPDGGVQGLSLTDVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLRYDM 3339 P P + FGV L + +N+ E +P VL+ V +L + GL + GLFR + ++ LD GK V +D G D+++ A +LK F RELP+PL+ F AY++++ I V + V + IL +P NY LRY M Sbjct: 762 PLPTQQFGVSLQYLKEKNQG--ELIPPVLRLTVTYLEEKGLHTEGLFRRSASAQTVRQVQRLLDQGKPVNFDDYG--------DIHLPAVILKTFLRELPQPLLTFEAYERIMDITS---VESSLRVTHCRQILRSLPEHNYAILRYLM 897
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Match: UPI001C3FE9CB (rho GTPase-activating protein 15 isoform X3 n=2 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FE9CB) HSP 1 Score: 80.5 bits (197), Expect = 1.080e-11 Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 2905 KVFGVPLVEMMRRNEDPREEVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAVLREALDHGKTVCWD-----PDGGVQGLSLT-------DVNMVAQLLKAFFRELPEPLIPFGAYDKVITIAKAAGVADARWVQAMKAILWGIPNANYNCLR 3330 +VFG L + R +E VP ++ + + K GLE+ G++R++G+ LR +DH + V D P+G Q L DV+++ LK FFRELPEPL+P+ +++ ++ K A A+ V+++K ++W +P N + +R Sbjct: 412 QVFGCRLETLCDRE---KENVPKFVQLCIDAVEKRGLEADGIYRVSGNLATIQKLRFLVDHERAVTTDGRYLFPEGLCQEEKLNMDDAQWEDVHVITGALKMFFRELPEPLVPYNSFEHFVSAIKIADAAEK--VESIKQLVWSLPKPNQDTMR 560 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4871.12785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4871.12785.1 >prot_L-elsbetiae_contig4871.12785.1 ID=prot_L-elsbetiae_contig4871.12785.1|Name=mRNA_L-elsbetiae_contig4871.12785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1119bp GRRAAHGGIVSTGDGGRPSPVRVTRVFGGGLQQVLTDESGTPPPPLPPSPback to top mRNA from alignment at L-elsbetiae_contig4871:489..13243+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4871.12785.1 ID=mRNA_L-elsbetiae_contig4871.12785.1|Name=mRNA_L-elsbetiae_contig4871.12785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12755bp|location=Sequence derived from alignment at L-elsbetiae_contig4871:489..13243+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4871:489..13243+ >mRNA_L-elsbetiae_contig4871.12785.1 ID=mRNA_L-elsbetiae_contig4871.12785.1|Name=mRNA_L-elsbetiae_contig4871.12785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6714bp|location=Sequence derived from alignment at L-elsbetiae_contig4871:489..13243+ (Laminarionema elsbetiae ELsaHSoW15)back to top |