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Homology
BLAST of mRNA_L-elsbetiae_contig4847.12751.1 vs. uniprot
Match: D7FS31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS31_ECTSI) HSP 1 Score: 187 bits (475), Expect = 8.550e-49 Identity = 133/238 (55.88%), Postives = 158/238 (66.39%), Query Frame = 3
Query: 264 EVGVPTVEVEVKVSRFAKHPS-GHTVYECLVGLPQTRQVWLVFRRYRAFVALRQRLKTACQEYHQKHGGAPTARGDSNNHKPHAPTKRLPGRG------GGGXSAPXXXXXXXXXXANRAGRNGAAGAGAXXXXRGANSAALMASVETILSECRFPSRLALGRSFSLRKERRKALHAFLAALAQLRPLPRAVARFMGLLENDRMALDQCGNYVRVVLVDSLLPLPPAQGLGAAGPNKR 956
E G+P V V KVS F KHP+ GHT+YEC V LP TRQVW+V RRYR FVALRQ LKTACQ Y QK AP++RG KPH P + P RG GGG S XXXXXXXXXX X R SA L+ S+ETIL C+FPSR+ LGRSFSL++ERRKALH+FL AL LRPLP VA F+GLLEN+R+A DQ G+YVRV+ +++LP+PP+ AA +R
Sbjct: 7 EGGMPVVTV--KVSSFLKHPAAGHTLYECRVELPHTRQVWVVHRRYREFVALRQHLKTACQHYRQKKP-APSSRGG----KPH-PANKPPERGTASLGVGGGVSXXXXXXXXXXXXXXXX----------XACSRPPGSAELIESIETILFVCKFPSRIPLGRSFSLKQERRKALHSFLEALVYLRPLPNKVASFLGLLENNRLAQDQNGDYVRVMHTETVLPIPPSPAFHAAAHARR 226
BLAST of mRNA_L-elsbetiae_contig4847.12751.1 vs. uniprot
Match: A0A6H5L1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X4_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.340e-47 Identity = 127/226 (56.19%), Postives = 155/226 (68.58%), Query Frame = 3
Query: 288 VEVKVSRFAKHPS-GHTVYECLVGLPQTRQVWLVFRRYRAFVALRQRLKTACQEYHQKHGGAPTARGDSNNHKPHAPTKRLPGRGG--GGXSAPXXXXXXXXXXANRAGRNGAAGAGAXXXXRGANSAALMASVETILSECRFPSRLALGRSFSLRKERRKALHAFLAALAQLRPLPRAVARFMGLLENDRMALDQCGNYVRVVLVDSLLPLPPAQGLGAAGPNKR 956
V VKVS F KHP+ GHT+YEC V LP TRQVW+V RRYR FVALRQ LKT CQ Y QK AP++RG + H + PT + G GG SA XXXXXXXXXX XX R SA L+ S+ET+L C+FPSR+ALGRSFSL++ERRKALH+FL AL LRPLP VA F+GL+EN+R+ALDQ G+YVRV+ +++LP+PP+ AA +R
Sbjct: 4 VTVKVSSFLKHPAAGHTLYECRVELPHTRQVWVVHRRYREFVALRQHLKTVCQRYRQKKP-APSSRGGKS-HPANKPTGQGTAPSGVRGGVSAXXXXXXXXXXXXXXX----------XXGSRPPGSAELIESIETVLFVCKFPSRIALGRSFSLKQERRKALHSFLEALVFLRPLPNKVASFLGLVENNRLALDQNGDYVRVMHTETVLPMPPSPAFHAAARTRR 217
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 192.2 |
Seed ortholog evalue | 3.7e-46 |
Seed eggNOG ortholog | 2880.D7FS31 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Ubiquitin carboxyl-terminal hydrolase |
EggNOG OGs | 2CXTA@1,2RZJR@2759 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 4 |
Model size | 1149 |
Cds size | 957 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816476.7924457-UTR-L-elsbetiae_contig4847:2473..2664 | 1622816476.7924457-UTR-L-elsbetiae_contig4847:2473..2664 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4847 2474..2664 + |
1691683587.977227-UTR-L-elsbetiae_contig4847:2473..2664 | 1691683587.977227-UTR-L-elsbetiae_contig4847:2473..2664 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4847 2474..2664 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816476.8041317-CDS-L-elsbetiae_contig4847:2664..2847 | 1622816476.8041317-CDS-L-elsbetiae_contig4847:2664..2847 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 2665..2847 + |
1691683587.9904978-CDS-L-elsbetiae_contig4847:2664..2847 | 1691683587.9904978-CDS-L-elsbetiae_contig4847:2664..2847 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 2665..2847 + |
1622816476.8186862-CDS-L-elsbetiae_contig4847:4337..4751 | 1622816476.8186862-CDS-L-elsbetiae_contig4847:4337..4751 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 4338..4751 + |
1691683588.0010886-CDS-L-elsbetiae_contig4847:4337..4751 | 1691683588.0010886-CDS-L-elsbetiae_contig4847:4337..4751 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 4338..4751 + |
1622816476.833602-CDS-L-elsbetiae_contig4847:5702..5798 | 1622816476.833602-CDS-L-elsbetiae_contig4847:5702..5798 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 5703..5798 + |
1691683588.0126896-CDS-L-elsbetiae_contig4847:5702..5798 | 1691683588.0126896-CDS-L-elsbetiae_contig4847:5702..5798 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 5703..5798 + |
1622816476.8460155-CDS-L-elsbetiae_contig4847:6528..6792 | 1622816476.8460155-CDS-L-elsbetiae_contig4847:6528..6792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 6529..6792 + |
1691683588.0323882-CDS-L-elsbetiae_contig4847:6528..6792 | 1691683588.0323882-CDS-L-elsbetiae_contig4847:6528..6792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4847 6529..6792 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4847.12751.1 >prot_L-elsbetiae_contig4847.12751.1 ID=prot_L-elsbetiae_contig4847.12751.1|Name=mRNA_L-elsbetiae_contig4847.12751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=319bp
MENKRNLSFKRARSMGGSVANSPIEVGVPTVEVEVKVSRFAKHPSGHTVY ECLVGLPQTRQVWLVFRRYRAFVALRQRLKTACQEYHQKHGGAPTARGDS NNHKPHAPTKRLPGRGGGGGSAPGGLVAAATAAANRAGRNGAAGAGAGAA SRGANSAALMASVETILSECRFPSRLALGRSFSLRKERRKALHAFLAALA QLRPLPRAVARFMGLLENDRMALDQCGNYVRVVLVDSLLPLPPAQGLGAA GPNKRLLPAHDRSDAGAASCSQRLSSSSVEPPAAAAAAAAAAGKEVVVAD AAEEGGGKAREGEVSEPPA back to topmRNA from alignment at L-elsbetiae_contig4847:2474..6792+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig4847.12751.1 ID=mRNA_L-elsbetiae_contig4847.12751.1|Name=mRNA_L-elsbetiae_contig4847.12751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4319bp|location=Sequence derived from alignment at L-elsbetiae_contig4847:2474..6792+ (Laminarionema elsbetiae ELsaHSoW15) CATGACACCTGATTTGTCAAGCTTTTCTATTTGATTAGACTGGCCATACC
GGCAAGAGAGGGTCTGACGGGTGCGTAAGTTTTCGACGCACGCAATAGGG
AGGACTCAGAATACACTACAGCAGCTGAAGAGGAGTGCTCCCATAATTTT
TGTCAGCCGTCTCGGGGGCAACCGGGCACGGGTGCGGCCCGATGGAAAAC
AAGAGAAATTTATCTTTCAAGAGAGCTCGGAGCATGGGCGGTAGCGTCGC
CAACTCTCCGATCGAAGTAGGGGTGCCGACGGTGGAGGTGGAGGTGAAGG
TTTCGCGCTTCGCTAAGCATCCCTCCGGACATACAGTCTATGAATGTCTC
GTTGGGCTGCCGCAAACACGACAGGTATGCTGCGGACACCCAAATTGAAG
TGCAACTGCGTTGAATTCCCAGAGACGGGGAGAGCAGAGATACCTGGTAG
TCTAGTAAGAACCAAAGGTAGCCAAAGGGTCGCGGCACACCGATGGTCAA
ATAGCTCTGAACACCGTCGAAAAGATTATTGATTCTCCGGGAAAAACATC
CCTGAAGGTTCTGTGTACCTAGCAGTGTGGCGGATTCGCTCGCCGTCGGG
AAAAGTAAGAGATCGAGCGAGAGAGTTCGATTGAAGCGGAGAGAGAGGGG
GGGGGGGGGAGAGAGAGAGAGAGAGGGAGACGTAGAGAGAGAAAGGAGAA
CGCTAAGCGCTTGAAAACGCCGGTAGCACAGGAGTAGATGTAGTGGCGCG
ATTTCCCTTTAAACCATAGGACCAAACGGTTGCTCCGCATTTATTGTTCT
GCGAGCAGCAGAGGTGCGTCTGGGCGGGCACCCAAACGAGGCCGTATCGG
GAATCGGGACAAGCCGATGAACCTGCCTAGGGGGCTGTTCGTGTAAGCAC
CTTGATGCTAAGCACATGGAGGATCTGGTTTCTGGTTCCTTACCGTACTG
GATGGAGAGATCGGAACGGTTTTTAATGTGAAGACAACACACACACACAC
ACCGAGGGCTGCTTGCAGCAGGGTTTAGAAAGAAATCGCCTTGTCTATCG
TTCAAGAAAGGTCTGCTGCATGTATGTAGTTAAAAATGGAACCTCCACGT
TAGACATAAGAGGTTGGACTCTGTAGGATTAAAACTAAACTTCTGTGCTA
GTTTTACTTTCTTTTGTTTGCCCGATTGACGGCAAGCCTGAAAACACAAA
AAAAGAAAAAAAAAAAAAACGGACTCCCTTTTCCCGGGTTGACACTTCCC
TAAGCATGCGGGTGGCAGGCAAAAGTGTTGTAACCATTAGTAATCATGAT
CTTACTAACATACGTGTCTTGCTCACGCCTTGTTGTACAACACAACATCG
CCAACGTGGCAAGTATCGGTGGCAATCAAAAGCCCGCTGGAGCGTGACCT
CCATACGCCGGCGTGTCTGTTTCTGGTGTACTCGGATCATTGGAGACCAT
ATACATGCATATTTACGCGATATAAGCGACAGAACGACTTGATTTGGTTG
TATTCTCGCCCGAAAGCTCCTGCTACGAAGGTTCATATGTATCTATGTAT
GTCATGCGGCTAAGAAAACGTTTCTTGCAAAAAAAATGAGCCGGTCCATG
CCTCCGGAGGCGTTTGCAGCTGTAGCGGCTGACTGGTACAAGTCCGCCGG
GCTTCTATTTGGTAGCCTCTCCGCGCCGCCCAGCGCTCGCGCTACCCAGT
GCTTGGTACATACATACATGTGCCGCTCTCTCCTGAATCCATCCAACCAA
AATATCTCCGGCCCACTCCTTTACGCCCAACCCGTGCCTTGCAAGCCCAC
CCTCACCCGCTTTCTGTGCGCCCTCCGCCCCCACCCACTTCCCGCGCGCG
CCCTCGTCCTGTAGGTGTGGTTGGTGTTCCGGCGCTACCGAGCGTTCGTC
GCTCTTCGGCAGCGCCTCAAGACCGCGTGCCAAGAGTACCACCAAAAACA
CGGCGGCGCGCCGACAGCCCGTGGCGACAGCAACAACCACAAGCCCCACG
CCCCGACGAAGCGGTTGCCCGGGCGGGGCGGCGGCGGCGGTTCAGCCCCG
GGGGGGCTCGTAGCCGCCGCCACCGCCGCCGCAAACAGAGCGGGGCGGAA
CGGCGCCGCGGGGGCGGGGGCGGGGGCGGCTTCTAGAGGCGCGAACTCGG
CGGCGTTGATGGCGAGCGTTGAGACGATCCTGTCGGAGTGCCGCTTTCCC
AGCAGGCTGGCCCTCGGGAGGTCGTTTTCGCTGAGAAAGGAGAGGAGGAA
GGCGTTACACGCCTTCCTGGCGGCGCTGGTGAGTAGGGTATGTAGGGTTA
GAGTTAGTTAGCGATGAAGTACATATTTGTATATATGCGTACCTGGAGGC
GTGCGAGTTGGAGTAGGGAAGAGGGCGCGCCCGGGCGGCGGCGGCGGCGG
CGGCGGCGGCGAGGGGAGGTGGGCTGCTCACAGACACTGCTCACAGACAC
GTGCCGTAGCTGCACCATCAGCGTCTACATCTGCCCTGAAAAGTAGTTGT
CAGCATCAGAGTCTGATATACACCGAAGCTGCTGAAAAAAAAAGTGGTTG
TCTTTTTCATTCGAGCCTCTGCCTGAGCGTGTGGTGACGCTTCGATTTTG
AGTTGGAGTTTTCGGCGACCAGGGAGAGAAGAGACACGGAAGCATCGAGT
GATTCCGAAGAAGGCTGCGGGTTTGCTCGATAGCGTGCACACATCGCTTG
CCAGCAGCACGGCGTACGGAGTACCCTCGCCGTCGTCGTTGCTGTGCCGA
AGTTGGTCGATGCCGTGTTGTCTCCGCGCAGAGGATCGATCAGCCTGAAT
TAAGTGCATGCCTACATACGGACCGTTCGGCATGGCGGTGGGATTGTCGC
TCCGCCAGGAAAGGGGCGGTCAGGGCTCGTCTCGCCCGGCGATGGTTTTG
TCGCCGGCAGCTCGAGTCGAGCTTATCGTTCGCCCGTCGGACGCACTCTT
GTGGAGGCACCATCACCGTCACCTTGCGTCTCTCGGGCATCCCTTTATTA
TCTCTGTTAGAAGTAGTATTTAGCTCGCAGCAGAAAACTGTCCGCGCCAG
CAAGCTCGTTTTCTGGTGTGTCGTTGTTCTTTTCTACAAATGTTCTGTTT
TAGCTAAAATGCCAGCGGTCTACGTCCAACCCGCGAAAAAAGTCGTTTCC
AGGGGGACTACTGCCGTTACAGACACGCCTCTTTTTCTGTTGGATTGATG
ATTGCCCGGTGTTTTTTCGTCGCGTTCAGGCCCAGCTGCGTCCTTTGCCG
AGGGCGGTGGCGCGGTTTATGGGGCTGCTGGAGAACGACCGGATGGCCCT
AGACCAATGCGGCAACTACGTCCGGGTGAGTCCACCACGAGATCGCGATG
GGGGGATTGGAGACTTCTTCCCAGCTTTATTTTGTCTTAGCCGTCCCTCC
CGGGTGAACTGGAGAGGGAAGGGGGGGGGGGGGGGGGGCGGGGGGGGGGG
GGGCGGGGGGGGGGGGGGGGCGGGGGGGGAGGTTGGGGGGAGGGGCGAGG
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGCTT
CGTGGGGGCGCCGTCACTTGTTGCTTCCGCGTGAATAGAAATTTGGTGAT
TGACCACACTGTTGGTTCCTGCTCGTACCGGGAGGCGTCGCCGACATTTC
GGAGATCCTTACGCGTGTCGCCGAATGTTTTACAAGCGGTCGTCGTGCGC
GTCTCATCTTCCTTCTGGCGGGCCTCTCCGTCTTTGCCGCCATCTATGTA
GGTATGCATCACCAATTATCAGCGGGGGGTTAAATTACTGGCAAACCGCT
GAGAGAGCCTTCCTTACTACCGGTATGCCTCTAGTGGCAATGGACCCTCC
GCCTTGGAAGGGCCCGTGCGGTATGTAGCAGTAGTATTCTCTGAGTAACT
ATCGAAAGAGTACACATGCCCTCCGCCTTCGCCTCCTCCCCCTCCTCCTC
CTGGCCTTCCACCCATGGCTCCCTCCTCACCCGTGGCCTTCGTCGTACGC
CGCAGGTGGTGTTGGTGGATAGCCTTTTGCCCTTGCCGCCGGCCCAAGGC
CTCGGCGCCGCTGGTCCCAACAAAAGGCTACTCCCGGCGCACGACCGCAG
CGATGCTGGTGCTGCTTCTTGCAGCCAACGCCTTTCGTCGTCATCGGTGG
AGCCCCCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGAAGGAGGTA
GTGGTGGCGGATGCTGCCGAGGAGGGGGGAGGCAAAGCACGCGAGGGTGA
AGTTTCAGAACCACCAGCA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig4847:2474..6792+ >mRNA_L-elsbetiae_contig4847.12751.1 ID=mRNA_L-elsbetiae_contig4847.12751.1|Name=mRNA_L-elsbetiae_contig4847.12751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1914bp|location=Sequence derived from alignment at L-elsbetiae_contig4847:2474..6792+ (Laminarionema elsbetiae ELsaHSoW15) ATGGAAAACAAGAGAAATTTATCTTTCAAGAGAGCTCGGAGCATGGGCGG TAGCGTCGCCAACTCTCCGATCGAAGTAGGGGTGCCGACGGTGGAGGTGG AGGTGAAGGTTTCGCGCTTCGCTAAGCATCCCTCCGGACATACAGTCTAT GAATGTCTCGTTGGGCTGCCGCAAACACGACAGATGGAAAACAAGAGAAA TTTATCTTTCAAGAGAGCTCGGAGCATGGGCGGTAGCGTCGCCAACTCTC CGATCGAAGTAGGGGTGCCGACGGTGGAGGTGGAGGTGAAGGTTTCGCGC TTCGCTAAGCATCCCTCCGGACATACAGTCTATGAATGTCTCGTTGGGCT GCCGCAAACACGACAGGTGTGGTTGGTGTTCCGGCGCTACCGAGCGTTCG TCGCTCTTCGGCAGCGCCTCAAGACCGCGTGCCAAGAGTACCACCAAAAA CACGGCGGCGCGCCGACAGCCCGTGGCGACAGCAACAACCACAAGCCCCA CGCCCCGACGAAGCGGTTGCCCGGGCGGGGCGGCGGCGGCGGTTCAGCCC CGGGGGGGCTCGTAGCCGCCGCCACCGCCGCCGCAAACAGAGCGGGGCGG AACGGCGCCGCGGGGGCGGGGGCGGGGGCGGCTTCTAGAGGCGCGAACTC GGCGGCGTTGATGGCGAGCGTTGAGACGATCCTGTCGGAGTGCCGCTTTC CCAGCAGGCTGGCCCTCGGGAGGTCGTTTTCGCTGAGAAAGGAGAGGAGG AAGGCGTTACACGCCTTCCTGGCGGCGCTGGTGTGGTTGGTGTTCCGGCG CTACCGAGCGTTCGTCGCTCTTCGGCAGCGCCTCAAGACCGCGTGCCAAG AGTACCACCAAAAACACGGCGGCGCGCCGACAGCCCGTGGCGACAGCAAC AACCACAAGCCCCACGCCCCGACGAAGCGGTTGCCCGGGCGGGGCGGCGG CGGCGGTTCAGCCCCGGGGGGGCTCGTAGCCGCCGCCACCGCCGCCGCAA ACAGAGCGGGGCGGAACGGCGCCGCGGGGGCGGGGGCGGGGGCGGCTTCT AGAGGCGCGAACTCGGCGGCGTTGATGGCGAGCGTTGAGACGATCCTGTC GGAGTGCCGCTTTCCCAGCAGGCTGGCCCTCGGGAGGTCGTTTTCGCTGA GAAAGGAGAGGAGGAAGGCGTTACACGCCTTCCTGGCGGCGCTGGCCCAG CTGCGTCCTTTGCCGAGGGCGGTGGCGCGGTTTATGGGGCTGCTGGAGAA CGACCGGATGGCCCTAGACCAATGCGGCAACTACGTCCGGGCCCAGCTGC GTCCTTTGCCGAGGGCGGTGGCGCGGTTTATGGGGCTGCTGGAGAACGAC CGGATGGCCCTAGACCAATGCGGCAACTACGTCCGGGTGGTGTTGGTGGA TAGCCTTTTGCCCTTGCCGCCGGCCCAAGGCCTCGGCGCCGCTGGTCCCA ACAAAAGGCTACTCCCGGCGCACGACCGCAGCGATGCTGGTGCTGCTTCT TGCAGCCAACGCCTTTCGTCGTCATCGGTGGAGCCCCCAGCGGCAGCGGC GGCGGCGGCGGCGGCGGCGGGGAAGGAGGTAGTGGTGGCGGATGCTGCCG AGGAGGGGGGAGGCAAAGCACGCGAGGGTGAAGTTTCAGAACCACCAGCA GTGGTGTTGGTGGATAGCCTTTTGCCCTTGCCGCCGGCCCAAGGCCTCGG CGCCGCTGGTCCCAACAAAAGGCTACTCCCGGCGCACGACCGCAGCGATG CTGGTGCTGCTTCTTGCAGCCAACGCCTTTCGTCGTCATCGGTGGAGCCC CCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGAAGGAGGTAGTGGT GGCGGATGCTGCCGAGGAGGGGGGAGGCAAAGCACGCGAGGGTGAAGTTT CAGAACCACCAGCA back to top
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