mRNA_L-elsbetiae_contig4837.12736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI) HSP 1 Score: 166 bits (420), Expect = 3.360e-52 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 243 MQNEAGSNVDLYIPRKCSWTNRLLQA DHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL Sbjct: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 81
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS) HSP 1 Score: 114 bits (285), Expect = 1.440e-31 Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 243 MQNE G NVDLYIPRKCSWTNRL++A DH S QINV +DPV+G FTGES YA+AGY+R + E D A T LV D+ L Sbjct: 1 MQNENGENVDLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKKVL 81
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO) HSP 1 Score: 111 bits (278), Expect = 1.690e-30 Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNE+G NVDLY+PRKCS+TNRL+QA DH++ QINV +DPV+G TG+S+VY LAGY+R + E D ALT LV KD Sbjct: 1 MQNESGQNVDLYVPRKCSYTNRLIQAKDHAAVQINVANVDPVTGIMTGDSNVYCLAGYIRFKSEGDMALTSLVRAKD 77
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.740e-30 Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNE G NVDLY+PRKCSWTNRLL + DH S QINVG +DPV+G FTGES +A++GY+R + EAD ALT L D Sbjct: 1 MQNENGDNVDLYVPRKCSWTNRLLTSGDHGSVQINVGNVDPVTGLFTGESTPFAISGYVRAKSEADMALTALAKAND 77
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A024TLB5_9STRA (40S ribosomal protein S21 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLB5_9STRA) HSP 1 Score: 110 bits (274), Expect = 5.960e-30 Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDE 234 MQN+AG N+D+YIPRKCSWTNR+L A DH+S QI V K+D +G +TG++DVYAL+GY+R +GE D ALT LV K +E Sbjct: 1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVD-ANGVYTGQNDVYALSGYIRAKGEGDHALTDLVRKAEE 77
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP) HSP 1 Score: 108 bits (271), Expect = 1.710e-29 Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNEAG ++D+YIPRKCSWTNR+L A DH+S QINVG+++ +G FTGESD YALAGY+R GE D+A+T L + D Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A448Z9N0_9STRA (40S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9N0_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.080e-29 Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNEAG NVDLY+PRKC+WTNRL++A DHSS Q+NV +DPV+G TG++ Y L GY+R E D ALT LV K D Sbjct: 1 MQNEAGENVDLYVPRKCNWTNRLVEAKDHSSVQVNVANVDPVTGLATGDATPYCLVGYIRKISEGDMALTALVEKND 77
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD) HSP 1 Score: 107 bits (266), Expect = 9.880e-29 Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNEAG ++D+YIPRKCSWTNR+L A DH+S QINV +++ +G FTGESD +ALAGY+R +GEAD ALT L + D Sbjct: 1 MQNEAGESIDIYIPRKCSWTNRILAAKDHASVQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A835Z072_9STRA (40S ribosomal protein S21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z072_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.140e-28 Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231 MQNE+G +VDLY+PRKCSWTNRLL A DH+S QINV K+DP +G TG +V+ALAG+LR G++D AL L ++KD Sbjct: 1 MQNESGKDVDLYVPRKCSWTNRLLVAKDHASVQINVAKIDPQTGVATGAHEVFALAGFLRRLGQSDNALAALSSQKD 77
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Match: A0A8J2SUB2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUB2_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.270e-28 Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDES 237 MQN+ G VDLYIPRKCSWTNRL+ A+D +S QINVG +DP +G TG S+ YAL+GY+R +GE+D ALT LV K+DES Sbjct: 109 MQNDQGQPVDLYIPRKCSWTNRLIGASDQASVQINVGTIDPNTGLHTGGSETYALSGYVRNKGESDMALTELVRKQDES 187 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4837.12736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4837.12736.1 >prot_L-elsbetiae_contig4837.12736.1 ID=prot_L-elsbetiae_contig4837.12736.1|Name=mRNA_L-elsbetiae_contig4837.12736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp MQNEAGSNVDLYIPRKCSWTNRLLQATDHSSTQINVGKLDPVSGTFTGESback to top mRNA from alignment at L-elsbetiae_contig4837:10771..13669+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4837.12736.1 ID=mRNA_L-elsbetiae_contig4837.12736.1|Name=mRNA_L-elsbetiae_contig4837.12736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2899bp|location=Sequence derived from alignment at L-elsbetiae_contig4837:10771..13669+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4837:10771..13669+ >mRNA_L-elsbetiae_contig4837.12736.1 ID=mRNA_L-elsbetiae_contig4837.12736.1|Name=mRNA_L-elsbetiae_contig4837.12736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig4837:10771..13669+ (Laminarionema elsbetiae ELsaHSoW15)back to top |