mRNA_L-elsbetiae_contig21426.6549.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21426.6549.1
Unique NamemRNA_L-elsbetiae_contig21426.6549.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21426.6549.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-15
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = -3 
Query:   29 ETLEASAEAFLGIGDPARALDPLLKLVETLQRQSAGDEG---GERSRLLSRA-----EALCDRASSGLRRPPAAAEHAAPPGAGDTPDDERAQLEEIREGIADL 316
            ETL+ASAEAFL IGD + AL PLL+LVE L+R+ AG  G   GE   +  R+     E LCDRASSGLR P     +      GD PD++R QL++IREG+A L
Sbjct:  646 ETLQASAEAFLYIGDHSGALPPLLRLVEVLRRRLAGGAGRHHGEEDEVHCRSLILGVEELCDRASSGLRLPTEVDAN------GDDPDEDRLQLDQIREGVAGL 743
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21426.6549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JG49_9PHAE1.900e-1551.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21426contigL-elsbetiae_contig21426:854..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.9109905-CDS-L-elsbetiae_contig21426:853..11711622815875.9109905-CDS-L-elsbetiae_contig21426:853..1171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21426 854..1171 +
1691683161.740153-CDS-L-elsbetiae_contig21426:853..11711691683161.740153-CDS-L-elsbetiae_contig21426:853..1171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21426 854..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21426.6549.1prot_L-elsbetiae_contig21426.6549.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21426 854..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21426.6549.1

>prot_L-elsbetiae_contig21426.6549.1 ID=prot_L-elsbetiae_contig21426.6549.1|Name=mRNA_L-elsbetiae_contig21426.6549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
WYLSPSSAPGGPRSPLGSPRAEPSHRRGCRLRRGAPRVPPPPGGAADRTR
PGRTALPPSTAAASARRPRRRRTAAAEFRRASAEGRGLSPGRRCRGRPPP
RLRGFP
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mRNA from alignment at L-elsbetiae_contig21426:854..1171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21426.6549.1 ID=mRNA_L-elsbetiae_contig21426.6549.1|Name=mRNA_L-elsbetiae_contig21426.6549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig21426:854..1171+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTACCTCTCGCCCTCCAGCGCGCCCGGAGGTCCGCGATCCCCTCTCGG
ATCTCCTCGAGCTGAGCCCTCTCATCGTCGGGGGTGTCGCCTGCGCCGGG
GGGCGCCGCGTGTTCCGCCGCCGCCGGGGGGCGCCGCAGACCGGACGAGG
CCCGGTCGCACAGCGCTTCCGCCCTCGACAGCAGCCGCGAGCGCTCGCCG
CCCTCGTCGCCGGCGGACTGCCGCTGCAGAGTTTCGACGAGCTTCAGCAG
AGGGTCGAGGGCTCTCGCCGGGTCGCCGATGCCGAGGAAGGCCTCCGCCG
AGGCTTCGAGGGTTTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21426:854..1171+

>mRNA_L-elsbetiae_contig21426.6549.1 ID=mRNA_L-elsbetiae_contig21426.6549.1|Name=mRNA_L-elsbetiae_contig21426.6549.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig21426:854..1171+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTACCTCTCGCCCTCCAGCGCGCCCGGAGGTCCGCGATCCCCTCTCGG
ATCTCCTCGAGCTGAGCCCTCTCATCGTCGGGGGTGTCGCCTGCGCCGGG
GGGCGCCGCGTGTTCCGCCGCCGCCGGGGGGCGCCGCAGACCGGACGAGG
CCCGGTCGCACAGCGCTTCCGCCCTCGACAGCAGCCGCGAGCGCTCGCCG
CCCTCGTCGCCGGCGGACTGCCGCTGCAGAGTTTCGACGAGCTTCAGCAG
AGGGTCGAGGGCTCTCGCCGGGTCGCCGATGCCGAGGAAGGCCTCCGCCG
AGGCTTCGAGGGTTTCCATGGTACCTCTCGCCCTCCAGCGCGCCCGGAGG
TCCGCGATCCCCTCTCGGATCTCCTCGAGCTGAGCCCTCTCATCGTCGGG
GGTGTCGCCTGCGCCGGGGGGCGCCGCGTGTTCCGCCGCCGCCGGGGGGC
GCCGCAGACCGGACGAGGCCCGGTCGCACAGCGCTTCCGCCCTCGACAGC
AGCCGCGAGCGCTCGCCGCCCTCGTCGCCGGCGGACTGCCGCTGCAGAGT
TTCGACGAGCTTCAGCAGAGGGTCGAGGGCTCTCGCCGGGTCGCCGATGC
CGAGGAAGGCCTCCGCCGAGGCTTCGAGGGTTTCCA
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