mRNA_L-elsbetiae_contig2142.6546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2142.6546.1
Unique NamemRNA_L-elsbetiae_contig2142.6546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2142.6546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2142contigL-elsbetiae_contig2142:1803..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size783
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.7460942-CDS-L-elsbetiae_contig2142:1802..22101622815875.7460942-CDS-L-elsbetiae_contig2142:1802..2210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2142 1803..2210 +
1691683161.6464496-CDS-L-elsbetiae_contig2142:1802..22101691683161.6464496-CDS-L-elsbetiae_contig2142:1802..2210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2142 1803..2210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.7558935-UTR-L-elsbetiae_contig2142:2210..25851622815875.7558935-UTR-L-elsbetiae_contig2142:2210..2585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2142 2211..2585 +
1691683161.6572897-UTR-L-elsbetiae_contig2142:2210..25851691683161.6572897-UTR-L-elsbetiae_contig2142:2210..2585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2142 2211..2585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2142.6546.1prot_L-elsbetiae_contig2142.6546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2142 1803..2210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2142.6546.1

>prot_L-elsbetiae_contig2142.6546.1 ID=prot_L-elsbetiae_contig2142.6546.1|Name=mRNA_L-elsbetiae_contig2142.6546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
LGLSRLQSCNGVRSATQLERTGGGGRSNELACNLCSVSGLRQPRGSKQTQ
TGIHPRNIHYNTSPHPGTGRGGDTKENQQPYPLRVAGRVRQDHQIGNQLT
ARATGMYARSWTLVVCTQIPPPPGRARALHRKKRE*
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mRNA from alignment at L-elsbetiae_contig2142:1803..2585+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2142.6546.1 ID=mRNA_L-elsbetiae_contig2142.6546.1|Name=mRNA_L-elsbetiae_contig2142.6546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=783bp|location=Sequence derived from alignment at L-elsbetiae_contig2142:1803..2585+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGGGCTTTCGAGGTTGCAATCATGCAACGGAGTTCGGTCGGCTACACA
GCTCGAGAGAACGGGGGGCGGCGGGCGATCAAATGAGCTTGCCTGCAACT
TATGTAGCGTATCGGGGCTCCGACAACCCCGAGGTTCCAAACAAACACAA
ACGGGCATCCATCCGCGCAACATCCACTACAACACCTCACCACACCCAGG
AACGGGGCGTGGGGGGGACACGAAAGAGAACCAGCAACCGTACCCTTTAA
GAGTAGCGGGGCGTGTCAGGCAAGACCACCAAATAGGCAACCAACTGACT
GCTAGGGCTACGGGCATGTACGCGCGGTCGTGGACGCTCGTGGTATGTAC
ACAAATACCGCCGCCGCCGGGCCGGGCCCGGGCTCTTCATCGAAAAAAAC
GAGAATAGAGCCGGCCGCACACAACACACAAAGCGGGCAACCTCTCCCTG
CCGCACCACCCAACCTACTTCAAACACCAGTCCGGCGCGGAAGGAACATG
AAATGAAAGATAAATACGCTTCGCAAAACATTCTACAAAACCGGCGTCAC
CACAAGGGCACGGGGCAACACCGAACACACCAACCAGCCACACAAGGCAA
CAAGCCGGACAAGGAGTTCAACCAATACACAAGAGAGGGAACTAGTATAA
TTCACAGCAGTGCGGCATCACCCCGAAACGATACCACCAGAACCAAGCAA
GGGGGGAGCTCCTACAATATGCCATCCACACACAAATATATCTCGCGCGC
ACCTAAGCTCAAAGTACGTCACGGGCATTTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2142:1803..2585+

>mRNA_L-elsbetiae_contig2142.6546.1 ID=mRNA_L-elsbetiae_contig2142.6546.1|Name=mRNA_L-elsbetiae_contig2142.6546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig2142:1803..2585+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGGGCTTTCGAGGTTGCAATCATGCAACGGAGTTCGGTCGGCTACACA
GCTCGAGAGAACGGGGGGCGGCGGGCGATCAAATGAGCTTGCCTGCAACT
TATGTAGCGTATCGGGGCTCCGACAACCCCGAGGTTCCAAACAAACACAA
ACGGGCATCCATCCGCGCAACATCCACTACAACACCTCACCACACCCAGG
AACGGGGCGTGGGGGGGACACGAAAGAGAACCAGCAACCGTACCCTTTAA
GAGTAGCGGGGCGTGTCAGGCAAGACCACCAAATAGGCAACCAACTGACT
GCTAGGGCTACGGGCATGTACGCGCGGTCGTGGACGCTCGTGGTATGTAC
ACAAATACCGCCGCCGCCGGGCCGGGCCCGGGCTCTTCATCGAAAAAAAC
GAGAATAGCTCGGGCTTTCGAGGTTGCAATCATGCAACGGAGTTCGGTCG
GCTACACAGCTCGAGAGAACGGGGGGCGGCGGGCGATCAAATGAGCTTGC
CTGCAACTTATGTAGCGTATCGGGGCTCCGACAACCCCGAGGTTCCAAAC
AAACACAAACGGGCATCCATCCGCGCAACATCCACTACAACACCTCACCA
CACCCAGGAACGGGGCGTGGGGGGGACACGAAAGAGAACCAGCAACCGTA
CCCTTTAAGAGTAGCGGGGCGTGTCAGGCAAGACCACCAAATAGGCAACC
AACTGACTGCTAGGGCTACGGGCATGTACGCGCGGTCGTGGACGCTCGTG
GTATGTACACAAATACCGCCGCCGCCGGGCCGGGCCCGGGCTCTTCATCG
AAAAAAACGAGAATAG
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