mRNA_L-elsbetiae_contig2141.6545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2141.6545.1
Unique NamemRNA_L-elsbetiae_contig2141.6545.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 2.190e-72
Identity = 134/268 (50.00%), Postives = 174/268 (64.93%), Query Frame = 2 
Query:  989 GLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSED-SARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLPDMN----APEAAEVMLQSDGSKGNPCTCFMFMKPTELAKGLLVEWIQAAEETDAKINQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPF-EDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHAFPSCEADATERANR 1774
            G+V+V +VNCGYLD AVNFLL+ ++    +KVL+VAMDE SFDF+D+L+PGC  +FP ED S RH A  AG+ G + FK + ++RP +LL ++ QGY +LWTD D+VWLGNPLPLLPD      A + AEVMLQ DG   N CTCFM++  T  A  LL  W +   ET+   NQ+ FR PL +   +G+ LE  P E  P G   F++ F E+NY R   + +L+VHNN+I GH  K DRF+   LWDV G  FPSC+     R  R
Sbjct: 1217 GMVVVTSVNCGYLDMAVNFLLSVRRAGGDVKVLFVAMDEASFDFLDDLSPGCVVLFPQEDGSERHRAVKAGQWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTQKNSTAAKCAEVMLQIDGKPINKCTCFMYLDCTPNAATLLELWKREIVETEVSQNQMAFRAPLAQMEQAGLNLEILPDEVMPPGFKAFDDAFLEENYDRYR-DNLLMVHNNWIIGHDPKRDRFRKSGLWDVEGWEFPSCQRRRRRRGRR 1483
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A834XGQ7_9FABA (Glycosyltransferase n=3 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834XGQ7_9FABA)

HSP 1 Score: 120 bits (302), Expect = 2.890e-26
Identity = 93/282 (32.98%), Postives = 136/282 (48.23%), Query Frame = 2 
Query:  959 YVLETA---VLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLPDMNAPEAAEVM-----------LQSDGSKGNP--CTCFMFMKPTELAKGLLVEWIQAAE-----ETDAKINQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHAFPS 1741
            Y LE A   V +NG VIV  V+  YL F  N+L++  +     KVL +A D  S   ++   PG A + P    A     AA + G   F +    RP+ LL +L  GY++++ D DMVWLG+P P L   +     + M           L   G KG P  C+C +F++PT+ AK +L +WI+  +     +T    +Q  F   L K     + L   P   FP+G  +F+N     + +    + +I+HNNYI G  +K  RF+ Y LW V  HA  S
Sbjct:   78 YTLEQALPFVAKNGTVIVCIVSQPYLPFLNNWLISITRQKHQDKVLVIAEDYASLYKVNERWPGHAVLIPPVLDAE----AAHKFGSMGFFNFTARRPRHLLQILELGYSVMYNDVDMVWLGDPFPYLEGNHDVYFTDDMTTIKPLNHSHDLPPPGKKGRPYICSCMIFLRPTDGAKLVLKKWIEELQIQPWSKTKKSNDQPAFNWALMKTAKE-VDLYLLPQFAFPTGGLYFKNK---TWVKETKGKHVIIHNNYIIGFEKKTKRFRDYGLWLVDDHALES 351
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A2P2IW83_RHIMU (Glycosyltransferase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IW83_RHIMU)

HSP 1 Score: 117 bits (292), Expect = 6.030e-25
Identity = 89/274 (32.48%), Postives = 138/274 (50.36%), Query Frame = 2 
Query:  977 VLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLP---DMNAPEAAEVM--------LQSDGSKGNP--CTCFMFMKPTELAKGLLVEWIQAAEET----DAKIN-QIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLW--DVAGHAFP 1738
            V +NG VIV+ V+  YL F  N+L++  +     KVL +A D  +   ++   PG A + P    ++    AA + G   F +    RP+ LLH+L  GY++++ D DMVWLG+P P L    D+   +   V+        L   G KG    C+C +F++PT+ AK +L +WI+  ++     + K N Q  F   L K     + L   P   FPSG  +F+N     + +    + +I+HNNYI G  +K+ RF+ + LW  D  GH  P
Sbjct:   86 VAKNGTVIVSAVSKAYLPFLNNWLISIARQNHQNKVLVIAEDYATLYEVNEKWPGHAVLIPPALDSQ----AAHKFGSQGFFNFTSRRPRHLLHILELGYSVMYNDVDMVWLGDPFPYLKGNHDVYFTDDMAVVKPLNHSHDLPPPGKKGRTYICSCMIFLRPTDGAKLVLKKWIKEIQDQPWVKEKKSNDQPAFNWALMKTAGQ-VDLCLLPQAAFPSGGLYFKNK---TWVQETKGKHVIIHNNYIIGFEKKIKRFREFGLWLVDHPGHEGP 351
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: G8A1U6_MEDTR (Glycosyltransferase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G8A1U6_MEDTR)

HSP 1 Score: 117 bits (292), Expect = 6.240e-25
Identity = 90/278 (32.37%), Postives = 133/278 (47.84%), Query Frame = 2 
Query:  959 YVLETA---VLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLP---------DMNA--PEAAEVMLQSDGSKGNP--CTCFMFMKPTELAKGLLVEWIQAAE-----ETDAKINQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGH 1729
            Y L+ A   V +NG VIV  V+  YL F  N+L++         VL +A D  S   ++ L PG A + P          A+ + G   F +    RP  LL +L  GY++++ D DMVWLG+P P L          DM A  P      L   G KG P  C+C +F++PT+ AK +L +W++  +      T    +Q  F   L K    G+ +   P   FP+G  +F+N     + +    + +I+HNNYI G  +K+ RF+ Y LW V  H
Sbjct:   79 YTLDEALTFVAKNGTVIVCIVSQPYLPFLNNWLISIAMHKRHDMVLVIAEDYPSLYKVNQLWPGHAVLIPPVLDLE----ASHKFGSQGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLGDPFPYLQGNHDVYFTDDMTAIKPLNHSHDLPPPGKKGRPYICSCMIFLRPTDGAKLILKKWMEELQIEPWSRTKKSNDQPAFNWALMKNA-KGVDMYLLPQSAFPTGGLYFKNK---TWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDEH 348
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A6P4CS42_ARADU (Glycosyltransferase n=8 Tax=Arachis TaxID=3817 RepID=A0A6P4CS42_ARADU)

HSP 1 Score: 111 bits (278), Expect = 4.240e-23
Identity = 88/279 (31.54%), Postives = 132/279 (47.31%), Query Frame = 2 
Query:  959 YVLETA---VLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLPDMNAPEAAEVM-----------LQSDGSKGNP--CTCFMFMKPTELAKGLLVEWIQAAEE-----TDAKINQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHA 1732
            Y L+ A   V +NG VI+  V+  YL F  N+L++  +      VL +A D  S   ++   PG A + P    A     +A + G   F +    RP  LL +L  GY++++ D DMVWLG+PL  L   +     + M           L   G KG P  C+C +F++PT+ AK +L  WI+  +      T    +Q  F   L K     + L   P   FP+G  +F+N     + +    + +I+HNNYI G  +K+ RF+ Y LW V  HA
Sbjct:   77 YTLDQALSFVGKNGTVIICIVSQPYLPFLNNWLISITRQNRQDMVLVIAEDYASLYKVNERWPGHAVLIPPVLDAE----SAHKFGSKGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLGDPLLQLEGNHDVYFTDDMIPIKPLNHSHALPPPGKKGRPYICSCMIFLRPTDGAKLVLRRWIEELQNQPWSRTQKSNDQPAFNWALMKTAKE-VDLYLLPQAAFPTGGLYFKNK---TWVKETKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHA 347
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: Q0R3Z8_LINUS (Glycosyltransferase n=1 Tax=Linum usitatissimum TaxID=4006 RepID=Q0R3Z8_LINUS)

HSP 1 Score: 111 bits (278), Expect = 4.380e-23
Identity = 89/279 (31.90%), Postives = 138/279 (49.46%), Query Frame = 2 
Query:  959 YVLETA---VLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLL---------PDMNAPEAAEVM--LQSDGSKGNP--CTCFMFMKPTELAKGLLVEWI---QAAEETDAKI--NQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHA 1732
            Y L  A   V +NG +IV  V+  YL F  N+L++  +      VL +A D  + D ++   PG A + P    ++    AA + G   F +    RP+ LL++L  GY++++ D DMVWLG+P   L          DM A +  +    L   G KG    C+C +F++PT+ AK ++ +WI   QA   + AK   +Q  F   L K     + +   P   FP+G  +F+N     + +    + +I+HNNYI G  +K+ RF+ Y LW V  HA
Sbjct:   79 YTLPQAASFVAKNGTLIVCAVSQAYLPFLNNWLISISRQKRQDMVLVIAEDYATLDKVNERWPGHAVLIPPALDSQ----AAHKFGSQGFFNFTARRPQHLLNILELGYSVMYNDVDMVWLGDPFTYLRGLHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIFLRPTDGAKLVMKKWIEELQAQPWSRAKKANDQPAFNWALMKTTGQ-VDVYLLPQSAFPTGGLYFKNK---TWVQGTKGKHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHA 349
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A4Y7LHM7_PAPSO (Glycosyltransferase n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7LHM7_PAPSO)

HSP 1 Score: 109 bits (272), Expect = 3.130e-22
Identity = 86/268 (32.09%), Postives = 127/268 (47.39%), Query Frame = 2 
Query:  989 GLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLP---------DMNA--PEAAEVMLQSDGSKGNP--CTCFMFMKPTELAKGLLVEWIQAAEETD----AKIN-QIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENP--FEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHA 1732
            G VIV  V+  YL F  N+L++  +     KVL +A D  +   ++   PG A + P     +    +A + G   F +    RP+ LLH+L  GY +++ D DMVWL +P   L          DM A  P      L   G KG    C+C +F++PT  AK ++ +WI+  ++      AK N Q  F   L+K     + L   P   FPSG  +F+N    ED   +       I+HNNYI G  +K+ RF+ + LW V  H+
Sbjct:  102 GTVIVCAVSSPYLPFLSNWLISISRFKHQEKVLVIAEDYKTLFLVNQRWPGHAVLIPPAPDLQ----SAHKFGSQGFFNFTSRRPRHLLHILELGYNVMYNDVDMVWLADPFTYLKGKHDVYFTDDMTAIKPLDHSNALPPPGKKGRTYICSCMIFLRPTPGAKLVMKKWIEELQDQPWSKKAKANDQPGFNWALNKTAGQ-VDLYLLPQAAFPSGGLYFKNKTWVEDTKGKH-----AIIHNNYIVGFEKKIQRFRDFGLWLVDEHS 359
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A0K9NUA3_ZOSMR (Glycosyltransferase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NUA3_ZOSMR)

HSP 1 Score: 107 bits (268), Expect = 7.070e-22
Identity = 87/270 (32.22%), Postives = 134/270 (49.63%), Query Frame = 2 
Query:  986 NGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLP---------LLPDMNAPEAAEVMLQSD----GSKGNP--CTCFMFMKPTELAKGLLVEWIQAAEE---TDAKI--NQIVFRGPLHKQRDSGM-RLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHA 1732
            NG VIV  V+  Y+DF  N+L++        KVL VA D  + ++++   PG + + P   +  +    A + G   F +    RPK LL +L  GY +++ D DMVWL +P P          L DM  P+   +    D    G KG    C+C +F++PT  AK ++ +WI+  ++   + AK   +Q  F   L+K   SG+  +   P   FPSG  +F+N    N  +    + +IVHNNYI G  +K+ RF  + LW V  H+
Sbjct:   75 NGTVIVCIVSYPYMDFLKNWLISVASFGHAGKVLVVAEDYETLEYVNRRWPGHSVLIPP--ALENVGGIAHKFGSQGFFNFTSRRPKHLLQLLELGYNVMYNDVDMVWLSDPFPYFKGNHDVYFLDDM--PKVKPLNHPHDLPPPGKKGRTYICSCMIFLRPTYGAKLIMKKWIEELQDQPWSRAKRANDQPAFNWGLNKT--SGIVDMYLLPQVAFPSGGLYFKNETWLNETK---GKHVIVHNNYITGFEKKIKRFHDFGLWLVDEHS 335
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: A0A1R3H270_COCAP (Glycosyltransferase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H270_COCAP)

HSP 1 Score: 103 bits (256), Expect = 5.670e-21
Identity = 80/240 (33.33%), Postives = 117/240 (48.75%), Query Frame = 2 
Query: 1079 KVLWVAMDETSFDFMDNLAPGCAAMFP-SEDSARHHATAAGRIGGDTFKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLP---------DMNA--PEAAEVMLQSDGSKGNP--CTCFMFMKPTELAKGLLVEWI---QAAEETDAKI--NQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDVAGHAFPS 1741
            KVL +A D  +   ++   PG A + P + DS   H     + G   F +    RP+ LL +L  GY++++ D DMVWLG+P P L          DM A  P      L   G KG    C+C +FM+PT+ AK ++ +WI   QA   + AK   +Q  F   L+K     + L   P   FP+G  +F+N     + +    + +I+HNNYI G  +K+ RF+ Y LW V  H   S
Sbjct:   23 KVLVIAEDYATLYKVNEKWPGHAVLVPPAPDSQTAH-----KFGSQGFFNFTSRRPRHLLQILELGYSVMYNDVDMVWLGDPFPYLEGNHDVYFTDDMPAVKPPNHSHDLPPPGKKGRTYICSCMIFMRPTDGAKLVMKKWIEELQAQPWSKAKKANDQPAFNWALNKTAGQ-VNLYLLPQTAFPTGGLYFKN---QTWVQETKGKHVIIHNNYITGFEKKIKRFRDYGLWLVDDHVLES 253
[Close]
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Match: UPI00145504A4 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145504A4)

HSP 1 Score: 102 bits (255), Expect = 3.950e-20
Identity = 72/260 (27.69%), Postives = 127/260 (48.85%), Query Frame = 2 
Query:  953 PPYVLETAVLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSGIKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDT--FKSQVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLPDMNAPEAAEVMLQSDGSKGNPCTCFMFMKPTELAKGLLVEWIQAAEETDAKI--NQIVFRGPLHKQRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGHGRKLDRFKAYHLWDV 1720
            PP  L         V++   N  ++DFA NFL + +   +   +  +A D+ +    +    G        +S +   T++GR+  D+  ++  V  RP  +L  L +GY +L+TD DM WL +P P           ++ L  D ++   C  F++ K T+     L  WI   + +D K+  +Q V    L K++  G++L+    + FP+G  FF+    D   +   +++++VHNN+IKGH  K++RFK  ++W V
Sbjct:  105 PPCTLGDVQKRKNTVVLTTTNAAFIDFADNFLESVRLTKTCPNITIIAEDDFTSQHYEKRT-GAGLYILKTNSGK---TSSGRLQFDSEDYRKFVNKRPSYILSFLEKGYNVLFTDVDMFWLKDPFPFFDG-----DFDMALARDSARFF-CAGFVYYKSTKTTIKFLKVWIDFMK-SDPKLTPDQEVMSEFLTKKKVPGLKLKILSSDNFPNGALFFD----DKKQQTKNKDVVVVHNNFIKGHDVKIERFKRVNMWLV 349
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2141.6545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE2.190e-7250.00Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A834XGQ7_9FABA2.890e-2632.98Glycosyltransferase n=3 Tax=Caesalpinioideae TaxID... [more]
A0A2P2IW83_RHIMU6.030e-2532.48Glycosyltransferase n=1 Tax=Rhizophora mucronata T... [more]
G8A1U6_MEDTR6.240e-2532.37Glycosyltransferase n=1 Tax=Medicago truncatula Ta... [more]
A0A6P4CS42_ARADU4.240e-2331.54Glycosyltransferase n=8 Tax=Arachis TaxID=3817 Rep... [more]
Q0R3Z8_LINUS4.380e-2331.90Glycosyltransferase n=1 Tax=Linum usitatissimum Ta... [more]
A0A4Y7LHM7_PAPSO3.130e-2232.09Glycosyltransferase n=4 Tax=Papaver somniferum Tax... [more]
A0A0K9NUA3_ZOSMR7.070e-2232.22Glycosyltransferase n=1 Tax=Zostera marina TaxID=2... [more]
A0A1R3H270_COCAP5.670e-2133.33Glycosyltransferase n=1 Tax=Corchorus capsularis T... [more]
UPI00145504A43.950e-2027.69UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2141contigL-elsbetiae_contig2141:11113..18286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue1.9e-54
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons8
Model size1845
Cds size1818
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.621233-UTR-L-elsbetiae_contig2141:11112..111371622815875.621233-UTR-L-elsbetiae_contig2141:11112..11137Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2141 11113..11137 +
1691683161.5430603-UTR-L-elsbetiae_contig2141:11112..111371691683161.5430603-UTR-L-elsbetiae_contig2141:11112..11137Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2141 11113..11137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815875.6330395-CDS-L-elsbetiae_contig2141:11137..111591622815875.6330395-CDS-L-elsbetiae_contig2141:11137..11159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 11138..11159 +
1691683161.5552313-CDS-L-elsbetiae_contig2141:11137..111591691683161.5552313-CDS-L-elsbetiae_contig2141:11137..11159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 11138..11159 +
1622815875.642864-CDS-L-elsbetiae_contig2141:11478..118581622815875.642864-CDS-L-elsbetiae_contig2141:11478..11858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 11479..11858 +
1691683161.5663204-CDS-L-elsbetiae_contig2141:11478..118581691683161.5663204-CDS-L-elsbetiae_contig2141:11478..11858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 11479..11858 +
1622815875.654212-CDS-L-elsbetiae_contig2141:13811..144651622815875.654212-CDS-L-elsbetiae_contig2141:13811..14465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 13812..14465 +
1691683161.5743012-CDS-L-elsbetiae_contig2141:13811..144651691683161.5743012-CDS-L-elsbetiae_contig2141:13811..14465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 13812..14465 +
1622815875.6656327-CDS-L-elsbetiae_contig2141:15118..152081622815875.6656327-CDS-L-elsbetiae_contig2141:15118..15208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 15119..15208 +
1691683161.58725-CDS-L-elsbetiae_contig2141:15118..152081691683161.58725-CDS-L-elsbetiae_contig2141:15118..15208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 15119..15208 +
1622815875.6787415-CDS-L-elsbetiae_contig2141:15740..159261622815875.6787415-CDS-L-elsbetiae_contig2141:15740..15926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 15741..15926 +
1691683161.60328-CDS-L-elsbetiae_contig2141:15740..159261691683161.60328-CDS-L-elsbetiae_contig2141:15740..15926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 15741..15926 +
1622815875.6919882-CDS-L-elsbetiae_contig2141:16663..168041622815875.6919882-CDS-L-elsbetiae_contig2141:16663..16804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 16664..16804 +
1691683161.6130383-CDS-L-elsbetiae_contig2141:16663..168041691683161.6130383-CDS-L-elsbetiae_contig2141:16663..16804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 16664..16804 +
1622815875.7045248-CDS-L-elsbetiae_contig2141:17108..173711622815875.7045248-CDS-L-elsbetiae_contig2141:17108..17371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 17109..17371 +
1691683161.624986-CDS-L-elsbetiae_contig2141:17108..173711691683161.624986-CDS-L-elsbetiae_contig2141:17108..17371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 17109..17371 +
1622815875.7156854-CDS-L-elsbetiae_contig2141:18204..182861622815875.7156854-CDS-L-elsbetiae_contig2141:18204..18286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 18205..18286 +
1691683161.6356132-CDS-L-elsbetiae_contig2141:18204..182861691683161.6356132-CDS-L-elsbetiae_contig2141:18204..18286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2141 18205..18286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2141.6545.1prot_L-elsbetiae_contig2141.6545.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2141 11138..18286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2141.6545.1

>prot_L-elsbetiae_contig2141.6545.1 ID=prot_L-elsbetiae_contig2141.6545.1|Name=mRNA_L-elsbetiae_contig2141.6545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=606bp
MTISRATGRSSNQLTPMGRQALMLLLVAALLAACSMINAGTENLRSPVPA
LRSVSKSPTALMLAVQDGLAGERSLREWADFAEHAIFELPPIWVICSDNS
AHAALVEELAPHLRPFGVAEGTSWATVLSIFRDQNTLSTVFGLLGEGVLP
PADLHQSIISVEQALHGTLAPTAVVTRSRSSGDAENPPYWLPDTFIAQIW
CNRAMLTGSGFEDEGFHDSTLLELLPKFLHAHSAGVRGAELVVADGTNFV
ASRFDADGASNGLVGNEAAADGGALYIGTSEVALVRVQNADGVEGADTSV
VSIGTALWPPPYVLETAVLENGLVIVNNVNCGYLDFAVNFLLAAQKVVSG
IKVLWVAMDETSFDFMDNLAPGCAAMFPSEDSARHHATAAGRIGGDTFKS
QVLIRPKVLLHVLNQGYTLLWTDSDMVWLGNPLPLLPDMNAPEAAEVMLQ
SDGSKGNPCTCFMFMKPTELAKGLLVEWIQAAEETDAKINQIVFRGPLHK
QRDSGMRLEFFPPEKFPSGKYFFENPFEDNYARIHYEEILIVHNNYIKGH
GRKLDRFKAYHLWDVAGHAFPSCEADATERANRAQDLPGATNDVVRTVLD
RRAGRT
back to top

mRNA from alignment at L-elsbetiae_contig2141:11113..18286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2141.6545.1 ID=mRNA_L-elsbetiae_contig2141.6545.1|Name=mRNA_L-elsbetiae_contig2141.6545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7174bp|location=Sequence derived from alignment at L-elsbetiae_contig2141:11113..18286+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCGACTGGCTCTTCGACAACGACATGACGATTTCTCGCGCTACAGGTA
ACGGGCTGGGCTCAAAGTTCCCACAGTAGCTAGCTACAGCATCTGTCTAG
CGCTGTGACGCCTCGATACTGGTTTTTGTGTCGTTAAAGGCCACGCCCTC
TGCCAATTCGTTGTCCTTTTTCGGCGCCCTCGTAGAGTCGGTGCGCAACA
CTGCTTACATGGGGGTACTACTGTACTGAGTCTCAATAAATACGGTCTGC
GCCCCCCCCCGCGATCTTGGATCTTCTGTCTCGGGGCGTCAGCGTGGTCT
GTCTCAGTCCCTCTTGTAACCGCTTTGCCTGCACAATCCCTTCAACCCAC
TGATACCGGAGAAAAGGGAGATCGAGCAACCAACTGACACCGATGGGGCG
CCAGGCCCTGATGCTCCTGTTGGTGGCGGCATTGTTGGCAGCTTGTAGCA
TGATCAACGCTGGAACTGAAAACTTGAGGTCACCGGTGCCTGCATTACGC
AGTGTCTCCAAGTCACCAACTGCTCTCATGCTGGCAGTGCAAGATGGCCT
TGCCGGAGAGAGGAGCTTGAGGGAATGGGCAGACTTTGCCGAACACGCGA
TCTTTGAGCTCCCACCAATCTGGGTGATCTGCTCCGACAACTCCGCTCAT
GCAGCTTTGGTGGAAGAGCTGGCACCGCATCTACGGCCGTTCGGTGTGGC
CGAGGGCACCTCGTGGGCGACAGTCCTAAGCATCTTTCGAGACCAGGTAT
ACTGGAAGTCTGCATCTGTTGGAAGTTGCTTTTCAACGTTTAGATACTCG
AAGATGGCCTAGTCTACCTCAAAGCACCTATCTGTGTCTTGCTCTAAAGA
TATACCCGCCGTAAAAACACATCCTAAGATATAATCTACCCTGAGCAGAG
TTTTTGCGAAGGGAAGTGCTGATTTCTTCTAATAAATATGTGTTTAATTT
TTCTCGGCCCGCGTTGTCCATAGTACTGTATGGAAACCAAATTCGTCACG
GAGTCCAGTCTCCTTTGGTTTTGGGGGGGCTCTCTCTCTTTGATATCTTG
AGTCAAGTTGTGAAGAGTATACTTATGGACAATAGATACATTTTCGAAGT
ATAGATATATGTAGACCTAGATAGACCAGGCCAACGTCAAAATTCAGGGA
AAGCAGCGCATGTGGTTTAACAGAAGCAGCGCTCAGCACAGCGCGGGTGT
TTCTGCACGACATTGAAAATAGGATAAAACAGCAAATCACATTCTACACA
GGATCATCCTCGATGATCTGGCCCTGTTTCAAATGGCACGAAGTTATAGG
TAGCCGTAGTTCCCAGATGGAATTCTGAGAACGTCACTGAAATATATACC
CATCTGTTTGTTCTCAACATATTATCTTATTGTACCAGTCGCTACATATG
TGAGACGGCTAAACCTAGAGGCCTGCGTTGACTCCGAGGGTGGATCGACA
AGTACGCAACAATATTGTAGGCATACTTAGTAGATGACTAGATAGATCAA
GCGAAGATGAGGGCCGAAAGGGAAGACATGCGTTGACACTTTTTTTCAAT
TACCCATAGCAGAAATCGGGGGAGATGATTTCAACCGCACCGCCGTCGCG
GATGCTTCGGGTAAAAAAATACAGGGATGGGAGTTACGGGAGATTGTCCA
CGTTACGTCCCCGTAATTACGGCTACCGCTGGGGGTTCCGTGTGTAGCTG
TGTTACCCCATCGGCCCTACCCCATCCCTGGGGGGTCCGTGCCTGGCATA
GTTCTGCTCTTTCGCGTTTGTGTACAGCTGTTTGTGTGTTTGTGTATGCT
GTATGAAAATGCGGTTGTCGGTATCGAGCGCTACCACTCTCCGCTGCAGT
AACTGCATGTATCATGTGTTGTGACGTTCGTAAAATGTGTGATACCCTAC
ACCTGCAGAGGGCGCAGGGTATAGACTTCAAGAAAAAAAAATATATACTG
CATACATGTATCAGTCTCCATTCTCCATCTCTACATCTAGATAGTATTAT
TTAGAGAACAGCAACAGTACGCGAGCCCGCAACTCCTCGAGTCTTGTAGC
ACATCTAGCCAGCACCCCACAACCACCCCCTCTGTTCCTTCCCCCCCCCC
CCCCCCCCCCCCACACCCCCCCACNNNNNNNNNNAAAAACCACAACACCC
ACCCCCCACACCCCCCGTGCTTTTTACCACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTTTTCCCCCCCCCCCCCCCCCCCCGCCAAAACAAGAACAA
CAGAACAACAGAGTAGTCTCCGCTGCTGCTTTGTGATCGTAACCAGCTGC
AGGAGGGCTGGCTGACCCTGGAGACCGTCGGGCTCGCTGTGAAGGTTGAT
TGGGGTCTCCTGGCTCATGATGTGGTCTGCTGTTGTGCTGTGTGCTGTGT
GGCTGTGTGGTACTGGTGTGCTGTGTGCTGGAAATTTTTAATTTTGGAGC
GGCCCCCTGGTGCCTGAGGGAGGGTACCAGGGGGCACCGTCACAATAAAT
AACGGGACATCACGGCAGATTGTCAACGTTACGTACGTCCCAACAACATT
ACGCGTAATCGGGTAACGCGTAACTCCCATCCCTGAAAACACATGCCTCA
TATTAAATCAACCACCACGTGTCGGCTACCCTCGCTTAGCTCTCTCACTT
AGCTCGCCCGTTTTCGTACCCGTTGCTTCCGCGCCGTTCTTGCCGGCAGA
ACACGCTCTCGACGGTATTCGGACTACTAGGGGAGGGCGTTTTGCCTCCT
GCCGACCTCCACCAGTCGATAATTTCCGTGGAACAGGCTCTTCACGGAAC
TCTGGCCCCAACTGCTGTTGTGACACGATCGCGGTCGAGCGGCGACGCTG
AAAATCCCCCGTATTGGCTACCGGACACATTCATCGCCCAAATCTGGTGC
AATCGCGCGATGTTGACGGGGTCGGGTTTCGAAGATGAGGGGTTCCATGA
CTCGACCCTCCTCGAACTGCTGCCTAAATTTTTGCACGCACATAGCGCCG
GTGTCCGTGGTGCCGAGCTCGTTGTTGCTGACGGCACCAACTTCGTGGCA
TCAAGATTCGACGCGGACGGAGCCAGCAATGGCCTCGTCGGCAACGAGGC
GGCGGCCGACGGAGGAGCCCTGTACATTGGAACTAGTGAGGTCGCCCTTG
TGCGCGTCCAAAACGCTGACGGCGTTGAGGGGGCTGACACCAGTGTCGTC
AGCATCGGCACAGCGCTGTGGCCGCCGCCGTATGTGTTGGAGACAGCGGT
GCTAGAGAACGGGCTCGTTATCGTGAATAACGTCAACTGTGGATACCTCG
ACTTCGCGGTGAACTTCTTGCTGGCGGCGCAAAAAGTTGTGAGCGGTATC
AAGGTGCGACGGGTACATACGCGGATTTCGTGACGACGTTGATGGTTCCT
CCATTTAGGCCACATCGGACGTGCGCCACCCTCTTTGCTACAGAGCAACC
GCCACGTTCCGCCACCAATCTACCTCCCAACTATGTGTTGCACCCACGAA
TTCCACGGAGAGGATGATTTCTGCACTGATTCACCTTAGAAAACCATCCA
TCGTGGATTGGAAAGGAATCAATACTATTGACAGCTTTTCCCCTCGTTGT
GCACGTCCATACCCTCAAAGCCTTCCTTTGCTTCCTCCGTGGGTGCTCAG
ACAATCGTGGTATTCTTGTCTTGTGGTGTAACGTGGCGTCCGAACTCGCA
ATATCACGGAAAATTTGCACCTACGTTCAATCTCAACCGACCCGTGTGGG
GTTATTCAGTATAATCGTCTCGTTCTTCTGTGTGTCACCGCCAAACGATC
TGACACTGATTTCCGTTCGATCCCGAAGAACTGTGCGAATACAAGACACG
TTGGCCTGCCTCTCTTGTAGGCTTCCACGTTTCCGGCGATCGTTGACAGG
GATGCCTGTTTCGGACCGCGGCTGATCGTTTCGAACCTAAGCATTAATTC
CTCTGATGGCTACTTTGGCGTTTTTGCCACTTCGGTGCTGTCTATTTGCA
ATACAGGTGCTGTGGGTGGCCATGGACGAAACTTCTTTTGATTTCATGGA
CAATCTAGCCCCGGGATGCGCTGCCATGTTCCCATCCGAAGACTCGGTGA
GCCTTCCCATTCTAGGACGCTATGTATGTACAGGGAATGGTTTGACTCCT
GAACGCTGCGCTGAGGCGCCGCATCTTGGTGAACACGGGGTGTGCAAACC
CTTCCGTTCCACGTGCTCACGAGGCTGAACGAAGTTCCACTCGGGGTGTC
ACCCGCGCGGGTCCTCTATCATACCTTCTTGTAGGAGACGCACGTGCGAT
GTCCCCGCTGCACGTGCGTGCCCAGCTGTGTTGTTTACCCCAAGCCGTGA
ACTTTACCTGGGTTGGAGGACCAAACTTTGCCAATTATTTAACTGCAGCC
TCTGATGAGCACACGAATAGTTCTCCATGTGAGACTACCACCGACTGGTA
GCATCAATGTTCGCAAGGCGGCCGTGCCGTTAGAGGATCTTAACGTGTAG
GGCGCCTGACTTCGGCGTGTCCAGCTCTATTTAGCTGAGACGCCTCGAAC
GTTACCTGCCGAACAAGCCGTTACTGAAGAACCCTTTGCCGCACTATCTA
AATATCTCTGCCACTTAAACGTTTGAAGGCACGTCATCACGCCACTGCGG
CCGGAAGAATTGGAGGCGACACATTCAAGTCGCAGGTGTTGATTCGTCCG
AAGGTCTTGCTTCACGTCTTGAACCAGGGGTATACCTTGCTTTGGACCGA
CTCCGACATGGTGTGGCTAGGAAACCCCCTGCCGCTCCTGCCGGACATGA
ATGCGCCAGAGGCGGTGAGCATATATGTAGTTTGTGTGTGCGGAGTGATA
GTTGAGAGCTTTTTACGCATGTAGAAGCATCACGCAGTCAAAAGCGTGAT
GCCCGCCGTCTCGAGGCTTACAGTTCGTAGGGCTCGCCTTGTAGAGACTG
TCGCGCCATCATTCAAGGACAGGTTTGCGCCACGCTTCACTCAATATTCA
ATCCGAGCAAACCTAGCAATTGTCTTTCCTTAAAACCAATGAAGGGCGCG
GGGTCGATCTAGCCGCAGGTTTGCCTCCTTGCTCGTGCACCGGTGCGGAG
TACCACACGAGCTATTTGCGTCCGCCAAACGCGGCCAGGGATCCTCCTAC
AGAGCAGATACATCTGTTGAATGGTCGGCTCTTGGAGAGTCGAAGTGTGC
TCTTTTTGTCAAGAATTTGAAGAGCTTCTAAACTTTAAACTTTTGCCCGC
CACTCTCGTTTTATGTTCCCGTCAAGCTCCGAGGGAATACCATGTTTCGC
ACTCCAAGGATCCAAGCATCTATCCTCACGACCCCCACAGAAAGTGAAGG
GAACTGTGTAAATCGGGGGTGGCAGCTAGAGAGCTACATATCATGGTGCA
GTAGATTATGGTTCAACTGCAGGTTCGCACTTGCAGCTCCCAAAGGGGCG
CTCGGGTTTGCTGTTCACATACGAAACCGTGGATATTCTCTAATCCTTAA
ACTCCATCTCTAACTCACGTTTTTCTCGCATGTGTCGACTTTCTGTCGTA
GGCGGAAGTGATGCTGCAGTCCGACGGCTCCAAGGGAAACCCTTGTACGT
GTTTCATGTTCATGAAGCCCACGGAGTTGGCCAAGGGGCTGCTCGTGGAA
TGGATACAGGCAGCTGAAGAGACCGATGCGAAGATAAATCAGGTGAACCC
CGAGAGCAGCGAGTACGGCTCTTGTCGTAGCGAAAAAGGATAGTAGGTAC
TATAGTACAGCAGGTGGTTCTAACACTTTGGCCTTCTCCTCGCATCGTTC
AGCCGACGAACGACGAATACGTTGACGGCAAAGGGACATCCGAGACGCGG
GGTGAGTGAGTGCTGCCTCTCATCTTCGCCTGGCCTTCCTGTTTCGTTGC
GTTTGCTCGAAGATTTCTTGTCTTCGTCCCCCCAAACTTTTGTTCATGTC
GTGAGCTATGCATATATCGTGTCTCCCGCTTCGGCCATGTTTTCAGATCG
TATTCAGGGGACCGCTGCACAAGCAGCGGGATTCCGGGATGCGCTTGGAA
TTCTTCCCGCCGGAGAAATTCCCTTCCGGCAAGTACTTTTTCGAAAACCC
GTTTGAAGACAACTACGCGCGCATCCACTACGAGGAAATACTGATCGTGC
ACAACAACTACATCAAGGGGCATGGTCGAAAGCTTGACCGGTTTAAGGCA
TACCACCTCTGGGACGTAGCAGGCCATGCGTTCCCCTCGTGCGAAGCGGA
TGCAACCGAGTGAGTCGCGTCGAATGCATCAAAACGATTTGTTTTTGGGC
GAGATTATCCACGATGGCGGTTGTGTGTTGTGGTGGGCGAGGGAAAGATC
AAAAAGTGCCCAAAATTGGTTTTTGGCATGATGGTCAGAAAGTGTGCACA
ATCTTGCTCGGGAGTAAGGCGTATTATGTAAGTCACGGGTTGGAGGGTTT
CGATTTGGGCGGAATGCTACAATGTGCCATCAGCTCATTGCCACACCGTT
CTTCGCTCATGAATATACAAACATCCATGTACATCACGGAGAAGTTGCGA
GGCGTGTTGTCCTCTTGAGTTGCCGTTAAAGTTGCACTCAAAAAGGTGGC
CGACCAAGCTTACCCCGGTTCTGGATTCCTCGATACATTTAATCAAGCGT
ATTTGCGGTGCTCAACATTCAGCCCAAGCGTTACCCTGTCCACTCAATGA
ATAAGTAGGAGCTTATCGCTTTCCCAGCTCTATCTAAGGTGTATGTACGC
TGGCACCAAACTGGATTGGCTCACGCATGTATCTCAATCAGATGGCCCTG
GGCTTGTAGATTGCCCAGGCTGCTTCCTCCCTTCGTTCTTTTGTTTTTTT
AGTTGTACGGGCATTTGTGTTGACTATGTACATACGTGTACATACGTGTA
CATACGTGTACATACTTCTTATGTACTTGTACTACCGTGAGGTGGATGGG
CGTGATGGATGTGGAGGGGGAGATGATCGCCCGGCAGTGGCATTTGTTTG
TGCCCGCGCGAGGGTTTGCGGCAAAAACAAGAGACGCGGGACCCTGCCCG
AGGCAACAAATGCGACATCACTGCTCGTACCGTGCTTGACAGGCGGGCAA
ACAGAGCGCAGGATCTGCCTGGGGCAACGAACGACGTTGTCCGTACCGTG
CTTGACAGGCGGGCGGGCAGGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2141:11113..18286+

>mRNA_L-elsbetiae_contig2141.6545.1 ID=mRNA_L-elsbetiae_contig2141.6545.1|Name=mRNA_L-elsbetiae_contig2141.6545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3636bp|location=Sequence derived from alignment at L-elsbetiae_contig2141:11113..18286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATTTCTCGCGCTACAGATGACGATTTCTCGCGCTACAGGGAGAT
CGAGCAACCAACTGACACCGATGGGGCGCCAGGCCCTGATGCTCCTGTTG
GTGGCGGCATTGTTGGCAGCTTGTAGCATGATCAACGCTGGAACTGAAAA
CTTGAGGTCACCGGTGCCTGCATTACGCAGTGTCTCCAAGTCACCAACTG
CTCTCATGCTGGCAGTGCAAGATGGCCTTGCCGGAGAGAGGAGCTTGAGG
GAATGGGCAGACTTTGCCGAACACGCGATCTTTGAGCTCCCACCAATCTG
GGTGATCTGCTCCGACAACTCCGCTCATGCAGCTTTGGTGGAAGAGCTGG
CACCGCATCTACGGCCGTTCGGTGTGGCCGAGGGCACCTCGTGGGCGACA
GTCCTAAGCATCTTTCGAGACCAGGGAGATCGAGCAACCAACTGACACCG
ATGGGGCGCCAGGCCCTGATGCTCCTGTTGGTGGCGGCATTGTTGGCAGC
TTGTAGCATGATCAACGCTGGAACTGAAAACTTGAGGTCACCGGTGCCTG
CATTACGCAGTGTCTCCAAGTCACCAACTGCTCTCATGCTGGCAGTGCAA
GATGGCCTTGCCGGAGAGAGGAGCTTGAGGGAATGGGCAGACTTTGCCGA
ACACGCGATCTTTGAGCTCCCACCAATCTGGGTGATCTGCTCCGACAACT
CCGCTCATGCAGCTTTGGTGGAAGAGCTGGCACCGCATCTACGGCCGTTC
GGTGTGGCCGAGGGCACCTCGTGGGCGACAGTCCTAAGCATCTTTCGAGA
CCAGAACACGCTCTCGACGGTATTCGGACTACTAGGGGAGGGCGTTTTGC
CTCCTGCCGACCTCCACCAGTCGATAATTTCCGTGGAACAGGCTCTTCAC
GGAACTCTGGCCCCAACTGCTGTTGTGACACGATCGCGGTCGAGCGGCGA
CGCTGAAAATCCCCCGTATTGGCTACCGGACACATTCATCGCCCAAATCT
GGTGCAATCGCGCGATGTTGACGGGGTCGGGTTTCGAAGATGAGGGGTTC
CATGACTCGACCCTCCTCGAACTGCTGCCTAAATTTTTGCACGCACATAG
CGCCGGTGTCCGTGGTGCCGAGCTCGTTGTTGCTGACGGCACCAACTTCG
TGGCATCAAGATTCGACGCGGACGGAGCCAGCAATGGCCTCGTCGGCAAC
GAGGCGGCGGCCGACGGAGGAGCCCTGTACATTGGAACTAGTGAGGTCGC
CCTTGTGCGCGTCCAAAACGCTGACGGCGTTGAGGGGGCTGACACCAGTG
TCGTCAGCATCGGCACAGCGCTGTGGCCGCCGCCGTATGTGTTGGAGACA
GCGGTGCTAGAGAACGGGCTCGTTATCGTGAATAACGTCAACTGTGGATA
CCTCGACTTCGCGGTGAACTTCTTGCTGGCGGCGCAAAAAGTTGTGAGCG
GTATCAAGAACACGCTCTCGACGGTATTCGGACTACTAGGGGAGGGCGTT
TTGCCTCCTGCCGACCTCCACCAGTCGATAATTTCCGTGGAACAGGCTCT
TCACGGAACTCTGGCCCCAACTGCTGTTGTGACACGATCGCGGTCGAGCG
GCGACGCTGAAAATCCCCCGTATTGGCTACCGGACACATTCATCGCCCAA
ATCTGGTGCAATCGCGCGATGTTGACGGGGTCGGGTTTCGAAGATGAGGG
GTTCCATGACTCGACCCTCCTCGAACTGCTGCCTAAATTTTTGCACGCAC
ATAGCGCCGGTGTCCGTGGTGCCGAGCTCGTTGTTGCTGACGGCACCAAC
TTCGTGGCATCAAGATTCGACGCGGACGGAGCCAGCAATGGCCTCGTCGG
CAACGAGGCGGCGGCCGACGGAGGAGCCCTGTACATTGGAACTAGTGAGG
TCGCCCTTGTGCGCGTCCAAAACGCTGACGGCGTTGAGGGGGCTGACACC
AGTGTCGTCAGCATCGGCACAGCGCTGTGGCCGCCGCCGTATGTGTTGGA
GACAGCGGTGCTAGAGAACGGGCTCGTTATCGTGAATAACGTCAACTGTG
GATACCTCGACTTCGCGGTGAACTTCTTGCTGGCGGCGCAAAAAGTTGTG
AGCGGTATCAAGGTGCTGTGGGTGGCCATGGACGAAACTTCTTTTGATTT
CATGGACAATCTAGCCCCGGGATGCGCTGCCATGTTCCCATCCGAAGACT
CGGTGCTGTGGGTGGCCATGGACGAAACTTCTTTTGATTTCATGGACAAT
CTAGCCCCGGGATGCGCTGCCATGTTCCCATCCGAAGACTCGGCACGTCA
TCACGCCACTGCGGCCGGAAGAATTGGAGGCGACACATTCAAGTCGCAGG
TGTTGATTCGTCCGAAGGTCTTGCTTCACGTCTTGAACCAGGGGTATACC
TTGCTTTGGACCGACTCCGACATGGTGTGGCTAGGAAACCCCCTGCCGCT
CCTGCCGGACATGAATGCGCCAGAGGCGGCACGTCATCACGCCACTGCGG
CCGGAAGAATTGGAGGCGACACATTCAAGTCGCAGGTGTTGATTCGTCCG
AAGGTCTTGCTTCACGTCTTGAACCAGGGGTATACCTTGCTTTGGACCGA
CTCCGACATGGTGTGGCTAGGAAACCCCCTGCCGCTCCTGCCGGACATGA
ATGCGCCAGAGGCGGCGGAAGTGATGCTGCAGTCCGACGGCTCCAAGGGA
AACCCTTGTACGTGTTTCATGTTCATGAAGCCCACGGAGTTGGCCAAGGG
GCTGCTCGTGGAATGGATACAGGCAGCTGAAGAGACCGATGCGAAGATAA
ATCAGGCGGAAGTGATGCTGCAGTCCGACGGCTCCAAGGGAAACCCTTGT
ACGTGTTTCATGTTCATGAAGCCCACGGAGTTGGCCAAGGGGCTGCTCGT
GGAATGGATACAGGCAGCTGAAGAGACCGATGCGAAGATAAATCAGATCG
TATTCAGGGGACCGCTGCACAAGCAGCGGGATTCCGGGATGCGCTTGGAA
TTCTTCCCGCCGGAGAAATTCCCTTCCGGCAAGTACTTTTTCGAAAACCC
GTTTGAAGACAACTACGCGCGCATCCACTACGAGGAAATACTGATCGTGC
ACAACAACTACATCAAGGGGCATGGTCGAAAGCTTGACCGGTTTAAGGCA
TACCACCTCTGGGACGTAGCAGGCCATGCGTTCCCCTCGTGCGAAGCGGA
TGCAACCGAATCGTATTCAGGGGACCGCTGCACAAGCAGCGGGATTCCGG
GATGCGCTTGGAATTCTTCCCGCCGGAGAAATTCCCTTCCGGCAAGTACT
TTTTCGAAAACCCGTTTGAAGACAACTACGCGCGCATCCACTACGAGGAA
ATACTGATCGTGCACAACAACTACATCAAGGGGCATGGTCGAAAGCTTGA
CCGGTTTAAGGCATACCACCTCTGGGACGTAGCAGGCCATGCGTTCCCCT
CGTGCGAAGCGGATGCAACCGAGCGGGCAAACAGAGCGCAGGATCTGCCT
GGGGCAACGAACGACGTTGTCCGTACCGTGCTTGACAGGCGGGCGGGCAG
GACGGCGGGCAAACAGAGCGCAGGATCTGCCTGGGGCAACGAACGACGTT
GTCCGTACCGTGCTTGACAGGCGGGCGGGCAGGACG
back to top