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Homology
BLAST of mRNA_L-elsbetiae_contig2140.6543.1 vs. uniprot
Match: D8LQP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP5_ECTSI) HSP 1 Score: 193 bits (490), Expect = 8.750e-55 Identity = 184/360 (51.11%), Postives = 213/360 (59.17%), Query Frame = 1
Query: 151 VSGNKLHTVMSVRAEDERTMALLRKECDQSVTTAMEARLKEKQAMTLVSGLQADIEALQSQVGVLQSALWLERERATAAVKASRGALSVATRARPNVGGPKTTTMMTINPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDFPGKRAGGTPGARAAHPGLSSCRSLTAPAAAVAQRAQKNRRRTPTSGGAAGLYYGEGSSEFWREGQGDYCGD--MGGGVGF------GGLGA-DGNNAAGTALADEPSLGLISWENDGIDDYLHGGXXXXXXDR----QQEPRIGHFVPDVDGRRGYGCGGGRHAGEAXXXXXXXXXGEIVTPFQKWKNDKGITSPGVAEMFAGQG 1191
+ GNKLHTVMSVRAEDERTMALLRKECDQS+ T+MEA++KEKQAMTLVSGLQADIEALQ+QVGVLQSALWLE+ERA+AAV+ASRGA+ +TR G K MT + XXXXXXXXXXXXXXXXXXXXXXXXXXXX GKR G P R G PA A A+ Q R + P G A LY G ++ G G C +GGG+GF GG G+ DG A + D +W ++ DY HG QQE I FV D+DGRRGY GGG +G +TPFQ+WK ++GI SPGVAEMF GQG
Sbjct: 7 IPGNKLHTVMSVRAEDERTMALLRKECDQSMVTSMEAKIKEKQAMTLVSGLQADIEALQTQVGVLQSALWLEKERASAAVRASRGAIGPSTRG----GVSKAALTMTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPS-------------GKRRNGIPLKRIGERG-----GRRRPATAPAKDTQALRGKLP-HGNAGDLY---GRNKPRGGGVGGNCSSQHLGGGLGFLASEQGGGAGSPDGTTATDGSFTD-------AWASN---DYFHGAGAGAGEKSPQGYQQERSIEQFVLDLDGRRGYAGGGG--SGTGGEVESGGGGQTTITPFQRWKRERGIVSPGVAEMFGGQG 328
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 60.5 |
Seed ortholog evalue | 2.1e-06 |
Seed eggNOG ortholog | 4792.ETI30723 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2D3W4@1,2SSZD@2759,3QI79@4776 |
Best tax level | Peronosporales |
Best eggNOG OG | NA|NA|NA |
Exons | 6 |
Model size | 1194 |
Cds size | 1194 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815875.3158464-CDS-L-elsbetiae_contig2140:3206..4067 | 1622815875.3158464-CDS-L-elsbetiae_contig2140:3206..4067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 3207..4067 - |
1691683161.3347855-CDS-L-elsbetiae_contig2140:3206..4067 | 1691683161.3347855-CDS-L-elsbetiae_contig2140:3206..4067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 3207..4067 - |
1622815875.329584-CDS-L-elsbetiae_contig2140:4612..4720 | 1622815875.329584-CDS-L-elsbetiae_contig2140:4612..4720 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 4613..4720 - |
1691683161.348993-CDS-L-elsbetiae_contig2140:4612..4720 | 1691683161.348993-CDS-L-elsbetiae_contig2140:4612..4720 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 4613..4720 - |
1622815875.3423014-CDS-L-elsbetiae_contig2140:5011..5079 | 1622815875.3423014-CDS-L-elsbetiae_contig2140:5011..5079 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 5012..5079 - |
1691683161.3589365-CDS-L-elsbetiae_contig2140:5011..5079 | 1691683161.3589365-CDS-L-elsbetiae_contig2140:5011..5079 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 5012..5079 - |
1622815875.3567646-CDS-L-elsbetiae_contig2140:5497..5531 | 1622815875.3567646-CDS-L-elsbetiae_contig2140:5497..5531 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 5498..5531 - |
1691683161.3695939-CDS-L-elsbetiae_contig2140:5497..5531 | 1691683161.3695939-CDS-L-elsbetiae_contig2140:5497..5531 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 5498..5531 - |
1622815875.3722837-CDS-L-elsbetiae_contig2140:7495..7558 | 1622815875.3722837-CDS-L-elsbetiae_contig2140:7495..7558 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 7496..7558 - |
1691683161.3799345-CDS-L-elsbetiae_contig2140:7495..7558 | 1691683161.3799345-CDS-L-elsbetiae_contig2140:7495..7558 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 7496..7558 - |
1622815875.3877203-CDS-L-elsbetiae_contig2140:7755..7815 | 1622815875.3877203-CDS-L-elsbetiae_contig2140:7755..7815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 7756..7815 - |
1691683161.3908684-CDS-L-elsbetiae_contig2140:7755..7815 | 1691683161.3908684-CDS-L-elsbetiae_contig2140:7755..7815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2140 7756..7815 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2140.6543.1 >prot_L-elsbetiae_contig2140.6543.1 ID=prot_L-elsbetiae_contig2140.6543.1|Name=mRNA_L-elsbetiae_contig2140.6543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=398bp
MDQSFKLSDGYKNWTAFVDEFRRIEESLQESKTVERLLVIRCNQLKSELV VSGNKLHTVMSVRAEDERTMALLRKECDQSVTTAMEARLKEKQAMTLVSG LQADIEALQSQVGVLQSALWLERERATAAVKASRGALSVATRARPNVGGP KTTTMMTINPTSSASVAAAEAAAAAAGVLAASSTGGRGGGGGGGGGSSPQ RRRDFPGKRAGGTPGARAAHPGLSSCRSLTAPAAAVAQRAQKNRRRTPTS GGAAGLYYGEGSSEFWREGQGDYCGDMGGGVGFGGLGADGNNAAGTALAD EPSLGLISWENDGIDDYLHGGGGGGQQDRQQEPRIGHFVPDVDGRRGYGC GGGRHAGEAGSGGVGGVGGEIVTPFQKWKNDKGITSPGVAEMFAGQG* back to topmRNA from alignment at L-elsbetiae_contig2140:3207..7815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig2140.6543.1 ID=mRNA_L-elsbetiae_contig2140.6543.1|Name=mRNA_L-elsbetiae_contig2140.6543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4609bp|location=Sequence derived from alignment at L-elsbetiae_contig2140:3207..7815- (Laminarionema elsbetiae ELsaHSoW15) ATGGACCAGTCCTTCAAGCTCTCCGATGGCTACAAAAATTGGACCGCTTT
CGTCGATGAGGTGGGTGAATAGTCTATCTAGTGTACGAATCCGTATGTAC
TGTAATGTTTGAGATACACCTATAGTCTCATCAAAATCCAAGCATCGCTA
TAACCTCTGGCTCACAGGTGTCTGTGTGTACATCTGTCTCGGGTTAAACT
GATGCCTAAGCTTTCCTGCATGCTGCCTGTGCATGCACATCGTGGCGTCC
TCCGTAGTTCCGCAGGATTGAGGAATCTCTCCAAGAGTCCAAGACGGTGG
AGCGTTTACTCGTGATACGGGTGAGTGAGGCCTTCAATTCCATCAGCCCC
ACTCAATATCAGGCGGTGGTATCAAAGCACACCTTGCTTTGACGGCTTCA
CGCATTTCTTTCTACGCATTCTGCAGCCCAAACATATCTATGTATCTTTT
ATCTTAGATGGTCTCTGTAGTCTAGATATTATTATTTTGTTTGCCCTCCG
ACAATTGCAGATATTTAGATCCAGACATACATACCCAAAACACCGACCGT
GGCATCCGTTATGAACCTCCAAATTTATATTAATTCGATGGCCAACCACT
GACAAAGAAAGTTCCGCCTGAAATTCCTGCACCCTTTGTCCGAAACGCTG
TAGACTACTGTAGTCTAGTCCTAGGCATGCTTTGTAAGACAACAAACCAA
ACCCCGAACGAATCTAGCCGCAGTCAAACAAAACTAGACCCCTCCCTCCT
CGACATTACCGGTAACATATCCAACAGAAACCCGATATTTCGGCGCGCAA
TAGTCTATGCGGCATTGCTGCTCAATTCTGCTCACCGTCCTGCCCTTTCT
GCGGCACCCCCGAGGGGCTACTCACAAAAAAAACGAAACACATAGACTAG
ACCCCCAAGGTCGAATTTTTGGGTGGGCATACTGTAGCACATTACTTGCT
ACGGGGGTCCGCAGATTCCTGTTGGGGTGGCCGAGGGTGAGGTTACATAT
TCTCAAATTGACCCCCCTTTACGAGGCTAAATATTTGAACAATCGAAGTG
TTGGGTTCCGGGGGGGGCATATGTGTCCAGAATTTATTATGTGCGAGTAG
CTTGGCACCCCCCCTCCAAACCACAATGCTCCTCCCCCCACAATCCGTTC
CTCCCTCCTTTCCACATGCACCTGCCCAAACATCTTGGCGAAGTAGGTAT
ATCTTTGAGGACTGGGGGTTGAATCAAATCGGAACTGCTGTAGTTTACTG
CTTTTGTTTTATGGAGAGGCTGTATTTTCCCAACCTGGCTGACGCATGCA
GACTACTGTGTCGGTGCTGTTCGGTACGATTCATTGCATGGAACACTTGG
TGGGACACGTGACTCATGCCGTACAGCCCCAGAGCATATATGTATAAGAA
GCAGGAAAGCAAAACAACAAGAGCATGTTGTGTACCCCGACACTGCTGTA
GCTATGTACATAATATGTACTTCTTGGGTGCTACAAGTACTTTCTCCAAG
GGTATTATTTCGTTTGTGCGTAAGACCACATCGCACTCCGCGCTTTGCTC
GATTGCCATCAACTACATCGGGGAGGAAGTATCCATTGCCAAATGTAGAA
TGGATGTGGATCATATGAAAAGCTTGGTGCGCACGCGTCCAGTAACCGCG
AAAAGCAGCCCCGCCAGAAACATTCGCCCGCAAGCGAAACCAACGCCCTT
GGATATCTCTTACAGGGACATTCCAAATAACATGCTTCGAGTCCATACAT
ACCGCATTTACTACACGGCGACTAGAGACAGTTAGGTCGTTCGTAAATTA
GATCCGATTCTCGTTCGATCATTGGCAAATTGTACGTGAAAGAAAATGGT
TCCCTTCACACTGTCTCGATGTCGACGACGAACAAAATATCTCCCGATTT
ATTTTCAAGGGCTTTTGGGGCTGGTTGATTCTGGATCCCAAGCGAAGGTA
TCATTATTTCGTTTTTCATTTTAGGGGGTTCAAGGCTCCAGTATCACTAC
AAGTAAACACGGGTGGGTTTAAAACCGTATTTGCGAGTCAGTCAGTCGCG
ACAGACCAAGTTGATCCCTGACTTCGCGTGACTCCAGACTGATATCCCCT
TTCGGTGGGCAAACTGCTATTTCCGGTTGCCGGCGACTCCAAGAGCTGAA
AAATGAGTTAAATATCGCGCGAAAGATGTGGGCGCTCTTGACTCTTCGTT
GTCTAACGACCTGCACTTATGCACCGGTGCCTTCGCCACGGTCCGGTTAT
ACATACTGTCGGGACGTTGCGCGGAACTCATCAGTGCAATCAGCTCAAGT
CGGAACTCGTCGTCAGCGGTGAGTGAACTCACTCTCCTGTGAGCGTGCTT
GCTAGTAAGATGTACCAGCAGATTGTTTTTCCCCCCATTATTGGCTTTTT
CGTCGTCTGCCCCACTGGCCCCCTCCCTTCTCTACGACTAGCTAGACGAC
CCAACTGGGGTCACACACGAGGGCCCCTCCTGCGGTGCCTGCCTGTTATG
TTTTTATCGCGAGCAGGGCTCAGCACTCCCCACCCTCGTCAACAATGAAG
TCGAAGTATTTTACACGATCAGTGCCATCGCCACCACCACCATGCTAAAC
TTCGTTGACAACGCTTACGTCACTTTTGCGCGCGAACCTGTTGATTTGCT
TGTTCGTTGACAACGCTTACGTCACTTTTGCGCGCGAACCTGTTGATTTG
CTTGTCTCGGTGGTATGTCTCTTGTTTGGCGTCAAGGGAACAAGCTGCAC
ACTGTCATGAGCGTGCGAGCGGAAGACGAACGGACTATGGCTTTGCTTCG
CAAGGTATGGCGAGCCTGGATGAGCAGCATGAACCAGATTCCAAAATTTA
CCCGGGGTTCTCGTCCTGGCATTGTAAATACGTACCATATAAAATAAGAT
TACCGTTCACAAACCGTGATCGCGCCCGCATGTCAAAGGGTTCGGTGAAA
GCGCCACTATTGAAACATACATATAAACAAGTAGAAGCTATGTCTGTGTT
GAACACAACATTTGAGTGAACGCCCTTCTAAGCTACGCACGCCTTCTTCT
CCCCCCACCACGCCTGCCTGTCCGTGCGTCGCACGACAACAACAGGAGTG
CGACCAGTCCGTGACGACCGCGATGGAGGCGAGGCTGAAGGAGAAGCAGG
CGATGACACTGGTGTCGGGGCTACAGGCAGATATCGAAGCCCTTCAATCG
CAGGTGAGAGGACAATGAAATGCACCGTTAATAGGGGCGGCCGTGTCAAC
TGGCCGCAAGGGACCCGAAGGTCGAAATCGCGCTGGGCTAGATGGGGCAT
TGACAGACTGATGGCAGAGGAGGTCAGCAGTATTTCATTCGGTATCTCTA
TTTGTTATTGTTGTACTTTCACACATTTATGTCCAACGCTTGAAGGGCTC
CTTGCTACGAAGGGGCCTCTTGCCTGAGCTCTGAAACGGTGGTCGCACAG
AGTGCCTTTTCCCTACGCTCCCGCGATATTTCATTCAATGAATAGAGTTT
ACCGGGAATGTTGTTGTATCTAGAGCAAAAGGGTCCTGGAAGCCGCGGTG
AATAGACCGCGCATAGAAAAATAATCAAAAAGAGAGAACCGAACCACCGA
ACAGGTTGCACCGAAGCAACACAGATGCAAACCCGGCGTGTGGATACTAT
CTTACTCTGGAGAAATAATGCCTCAGCCTTTTTTTTCAACCGGACAACAA
CCAGAGAGTCTCCCTTCTTCGTATGGCGCCGTCGACCCCCGAAAAAAGGT
TGGGGTCCTCCAGAGTGCCCTCTGGCTGGAGAGAGAGCGCGCGACCGCGG
CCGTCAAAGCCAGCAGAGGCGCTCTAAGCGTCGCCACGAGAGCCAGACCC
AACGTGGGCGGGCCCAAGACGACGACCATGATGACGATAAACCCGACCTC
GTCGGCGTCGGTAGCGGCGGCAGAGGCGGCGGCGGCGGCGGCAGGAGTGT
TAGCGGCGAGCTCAACGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGT
GGCTCATCACCACAGCGAAGGCGTGACTTTCCCGGGAAGCGGGCGGGCGG
CACCCCCGGGGCCAGGGCGGCGCACCCGGGATTATCTTCCTGTCGCTCGT
TGACGGCGCCTGCCGCGGCGGTGGCGCAACGCGCGCAGAAAAATCGAAGA
CGAACCCCGACCAGCGGCGGGGCAGCAGGGCTGTACTACGGCGAGGGCAG
CAGCGAGTTCTGGAGAGAAGGGCAAGGTGACTACTGCGGCGACATGGGTG
GGGGGGTCGGGTTCGGAGGTCTCGGCGCAGACGGCAACAACGCGGCCGGC
ACCGCGCTGGCGGACGAGCCTTCCCTGGGCCTTATCAGCTGGGAAAATGA
CGGCATCGATGACTACCTCCACGGCGGAGGTGGTGGTGGGCAGCAAGACA
GGCAGCAAGAACCGAGAATAGGGCACTTTGTCCCCGATGTCGACGGCCGC
CGAGGGTATGGTTGCGGCGGAGGCAGACACGCCGGCGAAGCAGGAAGCGG
CGGGGTGGGCGGGGTTGGCGGCGAAATCGTCACTCCTTTTCAGAAATGGA
AGAACGACAAGGGCATCACGTCTCCGGGGGTCGCCGAGATGTTTGCGGGC
CAGGGCTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig2140:3207..7815- >mRNA_L-elsbetiae_contig2140.6543.1 ID=mRNA_L-elsbetiae_contig2140.6543.1|Name=mRNA_L-elsbetiae_contig2140.6543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2388bp|location=Sequence derived from alignment at L-elsbetiae_contig2140:3207..7815- (Laminarionema elsbetiae ELsaHSoW15) ATGGACCAGTCCTTCAAGCTCTCCGATGGCTACAAAAATTGGACCGCTTT CGTCGATGAGATGGACCAGTCCTTCAAGCTCTCCGATGGCTACAAAAATT GGACCGCTTTCGTCGATGAGTTCCGCAGGATTGAGGAATCTCTCCAAGAG TCCAAGACGGTGGAGCGTTTACTCGTGATACGGTTCCGCAGGATTGAGGA ATCTCTCCAAGAGTCCAAGACGGTGGAGCGTTTACTCGTGATACGGTGCA ATCAGCTCAAGTCGGAACTCGTCGTCAGCGTGCAATCAGCTCAAGTCGGA ACTCGTCGTCAGCGGGAACAAGCTGCACACTGTCATGAGCGTGCGAGCGG AAGACGAACGGACTATGGCTTTGCTTCGCAAGGGAACAAGCTGCACACTG TCATGAGCGTGCGAGCGGAAGACGAACGGACTATGGCTTTGCTTCGCAAG GAGTGCGACCAGTCCGTGACGACCGCGATGGAGGCGAGGCTGAAGGAGAA GCAGGCGATGACACTGGTGTCGGGGCTACAGGCAGATATCGAAGCCCTTC AATCGCAGGAGTGCGACCAGTCCGTGACGACCGCGATGGAGGCGAGGCTG AAGGAGAAGCAGGCGATGACACTGGTGTCGGGGCTACAGGCAGATATCGA AGCCCTTCAATCGCAGGTTGGGGTCCTCCAGAGTGCCCTCTGGCTGGAGA GAGAGCGCGCGACCGCGGCCGTCAAAGCCAGCAGAGGCGCTCTAAGCGTC GCCACGAGAGCCAGACCCAACGTGGGCGGGCCCAAGACGACGACCATGAT GACGATAAACCCGACCTCGTCGGCGTCGGTAGCGGCGGCAGAGGCGGCGG CGGCGGCGGCAGGAGTGTTAGCGGCGAGCTCAACGGGTGGCCGTGGTGGT GGCGGTGGTGGTGGCGGTGGCTCATCACCACAGCGAAGGCGTGACTTTCC CGGGAAGCGGGCGGGCGGCACCCCCGGGGCCAGGGCGGCGCACCCGGGAT TATCTTCCTGTCGCTCGTTGACGGCGCCTGCCGCGGCGGTGGCGCAACGC GCGCAGAAAAATCGAAGACGAACCCCGACCAGCGGCGGGGCAGCAGGGCT GTACTACGGCGAGGGCAGCAGCGAGTTCTGGAGAGAAGGGCAAGGTGACT ACTGCGGCGACATGGGTGGGGGGGTCGGGTTCGGAGGTCTCGGCGCAGAC GGCAACAACGCGGCCGGCACCGCGCTGGCGGACGAGCCTTCCCTGGGCCT TATCAGCTGGGAAAATGACGGCATCGATGACTACCTCCACGGCGGAGGTG GTGGTGGGCAGCAAGACAGGCAGCAAGAACCGAGAATAGGGCACTTTGTC CCCGATGTCGACGGCCGCCGAGGGTATGGTTGCGGCGGAGGCAGACACGC CGGCGAAGCAGGAAGCGGCGGGGTGGGCGGGGTTGGCGGCGAAATCGTCA CTCCTTTTCAGAAATGGAAGAACGACAAGGGCATCACGTCTCCGGGGGTC GCCGAGATGTTTGCGGGCCAGGGCTAGGTTGGGGTCCTCCAGAGTGCCCT CTGGCTGGAGAGAGAGCGCGCGACCGCGGCCGTCAAAGCCAGCAGAGGCG CTCTAAGCGTCGCCACGAGAGCCAGACCCAACGTGGGCGGGCCCAAGACG ACGACCATGATGACGATAAACCCGACCTCGTCGGCGTCGGTAGCGGCGGC AGAGGCGGCGGCGGCGGCGGCAGGAGTGTTAGCGGCGAGCTCAACGGGTG GCCGTGGTGGTGGCGGTGGTGGTGGCGGTGGCTCATCACCACAGCGAAGG CGTGACTTTCCCGGGAAGCGGGCGGGCGGCACCCCCGGGGCCAGGGCGGC GCACCCGGGATTATCTTCCTGTCGCTCGTTGACGGCGCCTGCCGCGGCGG TGGCGCAACGCGCGCAGAAAAATCGAAGACGAACCCCGACCAGCGGCGGG GCAGCAGGGCTGTACTACGGCGAGGGCAGCAGCGAGTTCTGGAGAGAAGG GCAAGGTGACTACTGCGGCGACATGGGTGGGGGGGTCGGGTTCGGAGGTC TCGGCGCAGACGGCAACAACGCGGCCGGCACCGCGCTGGCGGACGAGCCT TCCCTGGGCCTTATCAGCTGGGAAAATGACGGCATCGATGACTACCTCCA CGGCGGAGGTGGTGGTGGGCAGCAAGACAGGCAGCAAGAACCGAGAATAG GGCACTTTGTCCCCGATGTCGACGGCCGCCGAGGGTATGGTTGCGGCGGA GGCAGACACGCCGGCGAAGCAGGAAGCGGCGGGGTGGGCGGGGTTGGCGG CGAAATCGTCACTCCTTTTCAGAAATGGAAGAACGACAAGGGCATCACGT CTCCGGGGGTCGCCGAGATGTTTGCGGGCCAGGGCTAG back to top
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