mRNA_L-elsbetiae_contig2137.6532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2137.6532.1
Unique NamemRNA_L-elsbetiae_contig2137.6532.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2137.6532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2137contigL-elsbetiae_contig2137:19984..20558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_001730.1
Exons1
Model size577
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815874.071685-CDS-L-elsbetiae_contig2137:19983..205561622815874.071685-CDS-L-elsbetiae_contig2137:19983..20556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 19984..20556 +
1691683160.5065854-CDS-L-elsbetiae_contig2137:19983..205561691683160.5065854-CDS-L-elsbetiae_contig2137:19983..20556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 19984..20556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2137.6532.1prot_L-elsbetiae_contig2137.6532.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2137 19984..20556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2137.6532.1

>prot_L-elsbetiae_contig2137.6532.1 ID=prot_L-elsbetiae_contig2137.6532.1|Name=mRNA_L-elsbetiae_contig2137.6532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
AAGSPVPEAQPRRRNEATSPFSTLPGHGHRFCGGGGGGGGENPTNSSSSP
RDLSLSSAGGGDSGPAVAVTASRAIRRGDVVAVERPLAAAQYSQTLPWVA
ACPGCLRHVGGLDTQLAIASGERARAEAFRSGPATAGPEKARPEKEAGAA
AAVAAAVAGGVSPTAPREPGVPSGAAAACSRRITAERREGG
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mRNA from alignment at L-elsbetiae_contig2137:19984..20558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2137.6532.1 ID=mRNA_L-elsbetiae_contig2137.6532.1|Name=mRNA_L-elsbetiae_contig2137.6532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=575bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:19984..20558+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGGGAGCCCCGTGCCCGAGGCGCAACCACGAAGAAGAAACGAAGC
GACCTCGCCGTTCTCGACCCTACCCGGCCACGGCCACCGCTTTTGCGGCG
GCGGCGGCGGCGGCGGCGGCGAAAATCCCACTAATAGCAGCAGCAGTCCA
AGGGACCTCTCATTGTCTTCCGCCGGCGGGGGGGATAGCGGCCCGGCGGT
GGCGGTGACCGCGTCGAGGGCGATCCGGCGAGGGGACGTGGTGGCGGTGG
AGCGGCCGCTGGCCGCCGCCCAGTACTCCCAGACCCTGCCCTGGGTAGCC
GCCTGCCCCGGCTGCCTGAGGCACGTGGGGGGGCTGGACACCCAGCTCGC
GATCGCGTCGGGAGAGCGAGCCCGTGCGGAAGCCTTCCGCTCCGGGCCTG
CAACAGCGGGACCTGAAAAGGCGAGGCCTGAAAAAGAGGCGGGCGCAGCG
GCAGCGGTAGCGGCAGCGGTGGCAGGGGGCGTGTCCCCGACGGCACCTCG
GGAGCCTGGGGTGCCGTCCGGAGCAGCAGCGGCGTGTTCTCGGCGGATAA
CAGCGGAGAGGCGGGAAGGAGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2137:19984..20558+

>mRNA_L-elsbetiae_contig2137.6532.1 ID=mRNA_L-elsbetiae_contig2137.6532.1|Name=mRNA_L-elsbetiae_contig2137.6532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:19984..20558+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGGGAGCCCCGTGCCCGAGGCGCAACCACGAAGAAGAAACGAAGC
GACCTCGCCGTTCTCGACCCTACCCGGCCACGGCCACCGCTTTTGCGGCG
GCGGCGGCGGCGGCGGCGGCGAAAATCCCACTAATAGCAGCAGCAGTCCA
AGGGACCTCTCATTGTCTTCCGCCGGCGGGGGGGATAGCGGCCCGGCGGT
GGCGGTGACCGCGTCGAGGGCGATCCGGCGAGGGGACGTGGTGGCGGTGG
AGCGGCCGCTGGCCGCCGCCCAGTACTCCCAGACCCTGCCCTGGGTAGCC
GCCTGCCCCGGCTGCCTGAGGCACGTGGGGGGGCTGGACACCCAGCTCGC
GATCGCGTCGGGAGAGCGAGCCCGTGCGGAAGCCTTCCGCTCCGGGCCTG
CAACAGCGGGACCTGAAAAGGCGAGGCCTGAAAAAGAGGCGGGCGCAGCG
GCAGCGGTAGCGGCAGCGGTGGCAGGGGGCGTGTCCCCGACGGCACCTCG
GGAGCCTGGGGTGCCGTCCGGAGCAGCAGCGGCGTGTTCTCGGCGGATAA
CAGCGGAGAGGCGGGAAGGAGGAGCGGCGGGGAGCCCCGTGCCCGAGGCG
CAACCACGAAGAAGAAACGAAGCGACCTCGCCGTTCTCGACCCTACCCGG
CCACGGCCACCGCTTTTGCGGCGGCGGCGGCGGCGGCGGCGGCGAAAATC
CCACTAATAGCAGCAGCAGTCCAAGGGACCTCTCATTGTCTTCCGCCGGC
GGGGGGGATAGCGGCCCGGCGGTGGCGGTGACCGCGTCGAGGGCGATCCG
GCGAGGGGACGTGGTGGCGGTGGAGCGGCCGCTGGCCGCCGCCCAGTACT
CCCAGACCCTGCCCTGGGTAGCCGCCTGCCCCGGCTGCCTGAGGCACGTG
GGGGGGCTGGACACCCAGCTCGCGATCGCGTCGGGAGAGCGAGCCCGTGC
GGAAGCCTTCCGCTCCGGGCCTGCAACAGCGGGACCTGAAAAGGCGAGGC
CTGAAAAAGAGGCGGGCGCAGCGGCAGCGGTAGCGGCAGCGGTGGCAGGG
GGCGTGTCCCCGACGGCACCTCGGGAGCCTGGGGTGCCGTCCGGAGCAGC
AGCGGCGTGTTCTCGGCGGATAACAGCGGAGAGGCGGGAAGGAGGA
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