mRNA_L-elsbetiae_contig2137.6531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2137.6531.1
Unique NamemRNA_L-elsbetiae_contig2137.6531.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2137.6531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2137contigL-elsbetiae_contig2137:18840..19963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size646
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.989179-CDS-L-elsbetiae_contig2137:18839..188811622815873.989179-CDS-L-elsbetiae_contig2137:18839..18881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 18840..18881 +
1691683160.4744036-CDS-L-elsbetiae_contig2137:18839..188811691683160.4744036-CDS-L-elsbetiae_contig2137:18839..18881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 18840..18881 +
1622815874.0012825-CDS-L-elsbetiae_contig2137:19359..199621622815874.0012825-CDS-L-elsbetiae_contig2137:19359..19962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 19360..19962 +
1691683160.4849572-CDS-L-elsbetiae_contig2137:19359..199621691683160.4849572-CDS-L-elsbetiae_contig2137:19359..19962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 19360..19962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2137.6531.1prot_L-elsbetiae_contig2137.6531.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2137 18840..19962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2137.6531.1

>prot_L-elsbetiae_contig2137.6531.1 ID=prot_L-elsbetiae_contig2137.6531.1|Name=mRNA_L-elsbetiae_contig2137.6531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
LNSSTRYSFCRTEKPFWTVWGVESASSSSATYIDISYRLGNKFWDYQHGM
LLTSSFPDLSEDEALRDLDPGDGSGSGNAPSSTPPLLPARHGRLAGWVSG
LPATTNASTSIISTSFRHRGPRAGSNAAGPDLYPSDKETVTAAPPATSSV
VQPASPPTPRSDTVCGSSGTHEGGTCASSSGSGGGSNNNNNNNHNNNSSS
NNRGTGAATAAAGAA
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mRNA from alignment at L-elsbetiae_contig2137:18840..19963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2137.6531.1 ID=mRNA_L-elsbetiae_contig2137.6531.1|Name=mRNA_L-elsbetiae_contig2137.6531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1124bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:18840..19963+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACTCCTCAACGCGGTACAGCTTCTGCCGTACAGAGAAGGTAATCGT
GCTTGTTTTTCGAGCGTGCGCGTGACTTTTCAGTTTAAAGAGGAGGCGCT
GTCTCGGTGGTGTGTTAGCGTTGCGCCGACCGAATAACGGAGACACTCAT
ACCATAGGTGTGGTTGCGCTTCCGCTGCGCCGCCCACTGCAATGTAAGCG
CACCTGCTGCGCAACAATTGAAACGGGTTGAAGCTTGGACGCCCTTTACC
TTATATAATGGCTTTTTTTAATTCAAATATCTTGCACCGCCGCGCGGGTG
TGTGTGTGTGTATGTGTGTGTGTATGAAATACACATGCGGCTACAACGTA
TCATTCTGCGCCCCCTGCGTTTCCGCAAGGGAGCACGGAACGTAGCCCCC
CCACATGATAACAAGCAGTTAAGGAGGTTTCATTCAACATTCGCTGGATA
CATATGAACCCACACTCCAAGCCGTGCATCTAACTGCCGAAAACGAAAAC
GCGGCCGACAACCACAGCAGCCATTCTGGACAGTCTGGGGGGTGGAGAGC
GCCTCCAGTTCCAGTGCTACATACATAGATATATCTTATCGCCTTGGGAA
CAAGTTTTGGGATTATCAACACGGCATGCTCCTGACGTCGAGCTTTCCCG
ATCTCTCGGAGGACGAGGCGCTGCGTGATCTCGACCCTGGAGATGGCAGC
GGCAGCGGCAACGCACCGTCCAGTACCCCGCCGCTCTTGCCGGCACGCCA
CGGGCGTCTAGCGGGGTGGGTCTCTGGCCTCCCGGCCACTACCAACGCCT
CCACCAGCATCATCTCCACCAGCTTCAGACACCGGGGACCACGAGCTGGC
AGCAACGCCGCCGGCCCCGACCTCTACCCGAGCGACAAAGAAACCGTAAC
GGCGGCACCGCCGGCGACTTCCTCAGTCGTCCAACCAGCAAGCCCGCCGA
CGCCAAGAAGCGACACCGTTTGCGGCAGCAGTGGCACACATGAGGGAGGA
ACTTGTGCAAGCAGCAGCGGCAGCGGCGGCGGCAGCAACAACAACAACAA
TAACAACCACAACAACAATAGCAGTAGCAACAACAGGGGTACCGGAGCGG
CCACGGCGGCGGCGGGGGCAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2137:18840..19963+

>mRNA_L-elsbetiae_contig2137.6531.1 ID=mRNA_L-elsbetiae_contig2137.6531.1|Name=mRNA_L-elsbetiae_contig2137.6531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:18840..19963+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACTCCTCAACGCGGTACAGCTTCTGCCGTACAGAGAAGCTCAACTC
CTCAACGCGGTACAGCTTCTGCCGTACAGAGAAGCCATTCTGGACAGTCT
GGGGGGTGGAGAGCGCCTCCAGTTCCAGTGCTACATACATAGATATATCT
TATCGCCTTGGGAACAAGTTTTGGGATTATCAACACGGCATGCTCCTGAC
GTCGAGCTTTCCCGATCTCTCGGAGGACGAGGCGCTGCGTGATCTCGACC
CTGGAGATGGCAGCGGCAGCGGCAACGCACCGTCCAGTACCCCGCCGCTC
TTGCCGGCACGCCACGGGCGTCTAGCGGGGTGGGTCTCTGGCCTCCCGGC
CACTACCAACGCCTCCACCAGCATCATCTCCACCAGCTTCAGACACCGGG
GACCACGAGCTGGCAGCAACGCCGCCGGCCCCGACCTCTACCCGAGCGAC
AAAGAAACCGTAACGGCGGCACCGCCGGCGACTTCCTCAGTCGTCCAACC
AGCAAGCCCGCCGACGCCAAGAAGCGACACCGTTTGCGGCAGCAGTGGCA
CACATGAGGGAGGAACTTGTGCAAGCAGCAGCGGCAGCGGCGGCGGCAGC
AACAACAACAACAATAACAACCACAACAACAATAGCAGTAGCAACAACAG
GGGTACCGGAGCGGCCACGGCGGCGGCGGGGGCAGCGCCATTCTGGACAG
TCTGGGGGGTGGAGAGCGCCTCCAGTTCCAGTGCTACATACATAGATATA
TCTTATCGCCTTGGGAACAAGTTTTGGGATTATCAACACGGCATGCTCCT
GACGTCGAGCTTTCCCGATCTCTCGGAGGACGAGGCGCTGCGTGATCTCG
ACCCTGGAGATGGCAGCGGCAGCGGCAACGCACCGTCCAGTACCCCGCCG
CTCTTGCCGGCACGCCACGGGCGTCTAGCGGGGTGGGTCTCTGGCCTCCC
GGCCACTACCAACGCCTCCACCAGCATCATCTCCACCAGCTTCAGACACC
GGGGACCACGAGCTGGCAGCAACGCCGCCGGCCCCGACCTCTACCCGAGC
GACAAAGAAACCGTAACGGCGGCACCGCCGGCGACTTCCTCAGTCGTCCA
ACCAGCAAGCCCGCCGACGCCAAGAAGCGACACCGTTTGCGGCAGCAGTG
GCACACATGAGGGAGGAACTTGTGCAAGCAGCAGCGGCAGCGGCGGCGGC
AGCAACAACAACAACAATAACAACCACAACAACAATAGCAGTAGCAACAA
CAGGGGTACCGGAGCGGCCACGGCGGCGGCGGGGGCAGCG
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