mRNA_L-elsbetiae_contig2137.6529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2137.6529.1
Unique NamemRNA_L-elsbetiae_contig2137.6529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A7X3XUE7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XUE7_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10
Identity = 50/174 (28.74%), Postives = 78/174 (44.83%), Query Frame = 1
Query:    4 VESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNNG*PALIHADIGRQVTVVETLIDAGVDVTLRSTATGRAALHHAAGNGQDDATRALL 525
            V  L+   + ++   +   +  P+  AA++G +E +  L R GA V+   + G  +LH  A   D A+ + +   GA   +     G TPLH+A+  G       +L++GA+     + G  A+  A       V+E L   G DV  R +   R  L  AA  G D A R LL
Sbjct:   25 VTGLVAVASLVATIGAVVPTEAPVADAAERGDLEAVRALLRQGADVNTAQSDGMTALHWAASNNDIAIAKALLYAGATYRATTRIGGYTPLHLASRGGHAEVARLILEDGADPDILTSTGVTAMHFAADADAAEVIEALAAHGGDVDARDSFAERTPLMFAAVRGADAAVRTLL 198          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: UPI0006C9BA89 (transient receptor potential channel pyrexia n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9BA89)

HSP 1 Score: 67.4 bits (163), Expect = 6.860e-10
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   73 LHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGA 336
            LH AA+ G  +++ +L    A ++ L+N G A +H    + D   +EI+ A G   L V +  G+TPLH+AA CGC + +  LL  GA
Sbjct:  287 LHSAARNGAHDVLGILAPKNAWINRLDNCGWAPIHYVVDRADSEGLEILLAAGGCLLDVSTRKGETPLHLAAKCGCADTLGLLLKKGA 374          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: UPI001C71B740 (uncharacterized protein LOC107454385 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71B740)

HSP 1 Score: 62.8 bits (151), Expect = 2.870e-8
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 IVESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDA-LNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNNG*PALIH-ADIGRQVTVVETLIDAGVDV 441
            I+E L+  G ++S   ++   +  LH+AA+KGH+EI+ +L RNGA   A + + G    H+ +  G   ++E   + G  N +     G T LH AA     +FV  ++DNGA  +   N+     IH A       V++  +  GVDV
Sbjct:   61 IIELLLTKGVEVS--ETDREGSTALHYAAEKGHLEIVKILIRNGANASAEVYDIGSKYCHIASKFGRRNILEFFFSEGG-NANETDKVGWTLLHYAAENNDVDFVEYIVDNGANIHAESNDTGMKPIHIASQSGCGKVLDYFLFKGVDV 206          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A5E3WKZ5_9AGAM (NACHT domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WKZ5_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 1.750e-7
Identity = 48/151 (31.79%), Postives = 70/151 (46.36%), Query Frame = 1
Query:    4 VESLMVTGAD-ISICSSNFRSNH-PLHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLS-------VRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNN-G*PALIHADIGRQVTVVETLID 426
            V++L+    D I  C ++  + + PLH A+ KGH EI+ +L + GA +DA       +LHL A  G    ++++     +N+         R+  G TPLH AA  G P  +  LL  GA    A    G  AL  A     V  V  L+D
Sbjct: 1142 VDTLLSHAPDAIDACRTHNAAGYTPLHIASLKGHTEIVRLLLKRGAFIDAETAERDTALHLAACDGRIDTVQVLLGLRDLNVPNVVELCRARNATGRTPLHEAASRGYPEIIRLLLQRGALSTAADYGPGGIALHWAAFNGHVDTVRELLD 1292          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: UPI001C7209C4 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C7209C4)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-7
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 1
Query:    1 IVESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDALNN-TGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTAR--NNG*PALIHADIGRQVTVVETLID-AGVDVT 444
            I+E L+  G  +S   ++ +   PLH+AA+KGH+EI+ +L RNGA   A  N  G    H     G   ++E   + G  + +     G T LH AA     + V  L+DNGA  +  +      P  I ++ G +  V   L+  AGVD T
Sbjct:   61 IIELLITKGVCVS--ETDKQGRKPLHYAAEKGHLEIVKILIRNGANASAGGNGIGSKYCHFAFRCGRRNILEFFFSEGG-DANETDEIGWTLLHYAAVNNDVDIVEYLVDNGANIHAEQFGTGTKPMHIASEYGCEKVVDYFLLKGAGVDTT 209          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A2E2MY63_HALSX (Uncharacterized protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2E2MY63_HALSX)

HSP 1 Score: 58.5 bits (140), Expect = 8.180e-7
Identity = 38/132 (28.79%), Postives = 61/132 (46.21%), Query Frame = 1
Query:   73 LHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGA-----EKYTARNNG*PALIH-ADIGRQVTVVETLIDAGVDVTLR 450
            +H  A +GH E++ +L R+GA + A    G  +LHL A      V+  +   G +++  R     +   +A   G     S L+D        EK        P+L+H A +G  + +VETL++AG D   R
Sbjct: 1261 VHLCADQGHTELIRLLARHGADMQATTAEGRTALHLAALADRAEVVTALLGLGGVSVDARDLHAMSAFQLACLKGASEAASVLIDEQGIEGVTEKAAVSTPPTPSLLHLACVGGALDLVETLLEAGADPDAR 1392          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A6P7H3I6_DIAVI (ankyrin-3-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H3I6_DIAVI)

HSP 1 Score: 58.2 bits (139), Expect = 9.420e-7
Identity = 57/179 (31.84%), Postives = 80/179 (44.69%), Query Frame = 1
Query:    4 VESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDA----LNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYT-ARNNG*PALIHADIGRQVTVVETLIDAGVDVTLRSTATGRAALHHAAGNGQDDATRALL 525
            V  L+  G DI    S   S  PLH A +K ++EI+ +L +  A V+A     N      LHL A  G   V+ ++ A GA +L  +S  G  P+HIAA  G  N V   ++N         NN    LI A +G    ++E LI    DV  ++      ALH+A      D    L+
Sbjct:   20 VARLLDNGVDIHFTESTGFS--PLHKAVEKRYLEIVELLLKRNANVNASLNRFNQYVPPPLHLAAVCGRLDVLTLLIAYGA-SLETKSMDGLLPIHIAAQKGNFNIVKYFVENKLYHVDICGNNLRTPLICAVVGGHTEIIEFLIQCDADVK-KADVFDTTALHYACQENLKDIIEILI 194          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A6L2PTE8_COPFO (Ion_trans domain-containing protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PTE8_COPFO)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-6
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 1
Query:   73 LHHAAQKGHIEIMAVLFRNGAAVDA---LNNTGHASLHLPAFQGDHAVMEIMSA--TGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNNG*PALIHADIG----------RQVTVVETLIDAGVDVTLRSTATGRAALHHAA 489
            LHHAA  G+ E +  L + GA VDA   +N+    +L        +  +++ S   T    L +    G TPLH A   G P+ V  L+  GA+       G   L+ A  G          +   +V+ L+ AG DV++++  TG  ALHHAA
Sbjct:   49 LHHAALAGNEEAVQALLKAGAHVDAHFHINSLPKQNLDNYCSVDLNTAVDVESKKFTSGFKLPLPECWGRTPLHQAVKSGNPSCVILLIQAGAKVNAPDEKGTTPLLLAGAGVVPDNINAVNKYEEIVQLLVKAGADVSVKNQDTGSTALHHAA 202          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: A0A4Y6KTG7_9RHOO (Uncharacterized protein n=1 Tax=Azoarcus sp. DD4 TaxID=2027405 RepID=A0A4Y6KTG7_9RHOO)

HSP 1 Score: 55.8 bits (133), Expect = 3.070e-6
Identity = 48/150 (32.00%), Postives = 68/150 (45.33%), Query Frame = 1
Query:    4 VESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNNG*PALIHADI-----GRQVTVVETLIDAGVD 438
            V +L+  G DI   + + R   PLH AA     E++A+L + GA ++AL    + ++ + A   D A +  + A GA    V S    T L  AA  G    V  L+  GA      N    ALI A +      R V  V+ L+DAG D
Sbjct:   53 VAALVAKGIDIE--ARDGRGRTPLHVAAHGRRREVIALLAKAGADLNALEYDRYDAVTIAAVADDEATLAQLLALGASARQVTSRYDGTALIAAAHLGHDGVVRQLIAAGAPLDHVNNLHWTALIEAVVLGDGGARHVATVKALLDAGAD 200          
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Match: T1ISP3_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ISP3_STRMM)

HSP 1 Score: 56.6 bits (135), Expect = 3.450e-6
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 IVESLMVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDALNNTGHASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVSTLLDNGAEKYTARNNG*PALIHADIGRQVTVVETLIDA 429
            I E+L+  GA+++  + +F +  PLH AA+K H ++M +L + GA V+AL+  G + LH  A +GD     I+ + G ++ S+ S  G T   +A       F+    + GA+           L+ A     +T+ + L+DA
Sbjct:  375 ITEALIRKGANVNDKNKDFLT--PLHIAAEKSHYDVMDLLLKQGAKVNALDGLGQSILHKCALEGDIQACRILLSYG-VDPSIVSLQGYTAAQVATESVQKLFLENPSNGGADVENQ-------LLEAAKAGDLTLTKKLLDA 507          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2137.6529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7X3XUE7_9BACT1.380e-1028.74Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
UPI0006C9BA896.860e-1037.50transient receptor potential channel pyrexia n=1 T... [more]
UPI001C71B7402.870e-831.54uncharacterized protein LOC107454385 n=1 Tax=Paras... [more]
A0A5E3WKZ5_9AGAM1.750e-731.79NACHT domain-containing protein n=1 Tax=Peniophora... [more]
UPI001C7209C42.840e-732.24serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A2E2MY63_HALSX8.180e-728.79Uncharacterized protein n=1 Tax=Halomonas sp. TaxI... [more]
A0A6P7H3I6_DIAVI9.420e-731.84ankyrin-3-like n=1 Tax=Diabrotica virgifera virgif... [more]
A0A6L2PTE8_COPFO1.030e-631.17Ion_trans domain-containing protein n=1 Tax=Coptot... [more]
A0A4Y6KTG7_9RHOO3.070e-632.00Uncharacterized protein n=1 Tax=Azoarcus sp. DD4 T... [more]
T1ISP3_STRMM3.450e-629.37Uncharacterized protein n=1 Tax=Strigamia maritima... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2137contigL-elsbetiae_contig2137:16773..17297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_001320.1
Exons1
Model size525
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2137.6529.1prot_L-elsbetiae_contig2137.6529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2137 16932..17282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815874.1029499-UTR-L-elsbetiae_contig2137:16772..169311622815874.1029499-UTR-L-elsbetiae_contig2137:16772..16931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2137 16773..16931 -
1691683160.5170696-UTR-L-elsbetiae_contig2137:16772..169311691683160.5170696-UTR-L-elsbetiae_contig2137:16772..16931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2137 16773..16931 -
1622815874.1259902-UTR-L-elsbetiae_contig2137:17282..172971622815874.1259902-UTR-L-elsbetiae_contig2137:17282..17297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2137 17283..17297 -
1691683160.5415914-UTR-L-elsbetiae_contig2137:17282..172971691683160.5415914-UTR-L-elsbetiae_contig2137:17282..17297Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2137 17283..17297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815874.1162086-CDS-L-elsbetiae_contig2137:16931..172821622815874.1162086-CDS-L-elsbetiae_contig2137:16931..17282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 16932..17282 -
1691683160.533337-CDS-L-elsbetiae_contig2137:16931..172821691683160.533337-CDS-L-elsbetiae_contig2137:16931..17282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2137 16932..17282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2137.6529.1

>prot_L-elsbetiae_contig2137.6529.1 ID=prot_L-elsbetiae_contig2137.6529.1|Name=mRNA_L-elsbetiae_contig2137.6529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MVTGADISICSSNFRSNHPLHHAAQKGHIEIMAVLFRNGAAVDALNNTGH
ASLHLPAFQGDHAVMEIMSATGAINLSVRSHAGDTPLHIAACCGCPNFVS
TLLDNGAEKYTARNNG*
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mRNA from alignment at L-elsbetiae_contig2137:16773..17297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2137.6529.1 ID=mRNA_L-elsbetiae_contig2137.6529.1|Name=mRNA_L-elsbetiae_contig2137.6529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:16773..17297- (Laminarionema elsbetiae ELsaHSoW15)
ATCGTGGAGAGTCTGATGGTCACTGGCGCCGATATCAGTATCTGCAGCAG CAACTTTCGTAGCAACCATCCTCTCCACCATGCTGCTCAGAAGGGGCATA TCGAAATCATGGCCGTGCTCTTCCGCAACGGTGCGGCGGTAGATGCCCTC AACAATACCGGACATGCATCGCTGCACTTGCCTGCCTTTCAAGGCGACCA TGCTGTGATGGAGATTATGTCGGCTACCGGGGCCATCAATCTCAGCGTTC GCAGTCACGCAGGAGATACCCCTCTCCACATTGCTGCTTGCTGTGGTTGT CCCAATTTTGTGTCGACGCTCCTCGACAATGGAGCGGAGAAATATACAGC TCGTAACAACGGGTAACCCGCACTGATTCACGCTGACATTGGGCGCCAGG TAACTGTGGTGGAGACTCTGATCGATGCGGGTGTCGACGTCACCCTCCGC AGCACGGCAACCGGTCGTGCTGCTTTACATCATGCTGCTGGCAACGGGCA GGACGATGCAACCCGTGCCCTTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2137:16773..17297-

>mRNA_L-elsbetiae_contig2137.6529.1 ID=mRNA_L-elsbetiae_contig2137.6529.1|Name=mRNA_L-elsbetiae_contig2137.6529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig2137:16773..17297- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCACTGGCGCCGATATCAGTATCTGCAGCAGCAACTTTCGTAGCAA
CCATCCTCTCCACCATGCTGCTCAGAAGGGGCATATCGAAATCATGGCCG
TGCTCTTCCGCAACGGTGCGGCGGTAGATGCCCTCAACAATACCGGACAT
GCATCGCTGCACTTGCCTGCCTTTCAAGGCGACCATGCTGTGATGGAGAT
TATGTCGGCTACCGGGGCCATCAATCTCAGCGTTCGCAGTCACGCAGGAG
ATACCCCTCTCCACATTGCTGCTTGCTGTGGTTGTCCCAATTTTGTGTCG
ACGCTCCTCGACAATGGAGCGGAGAAATATACAGCTCGTAACAACGGGTA
AATGGTCACTGGCGCCGATATCAGTATCTGCAGCAGCAACTTTCGTAGCA
ACCATCCTCTCCACCATGCTGCTCAGAAGGGGCATATCGAAATCATGGCC
GTGCTCTTCCGCAACGGTGCGGCGGTAGATGCCCTCAACAATACCGGACA
TGCATCGCTGCACTTGCCTGCCTTTCAAGGCGACCATGCTGTGATGGAGA
TTATGTCGGCTACCGGGGCCATCAATCTCAGCGTTCGCAGTCACGCAGGA
GATACCCCTCTCCACATTGCTGCTTGCTGTGGTTGTCCCAATTTTGTGTC
GACGCTCCTCGACAATGGAGCGGAGAAATATACAGCTCGTAACAACGGGT
AA
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