mRNA_L-elsbetiae_contig2135.6526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2135.6526.1
Unique NamemRNA_L-elsbetiae_contig2135.6526.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2135.6526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2135contigL-elsbetiae_contig2135:16252..16610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2135.6526.1prot_L-elsbetiae_contig2135.6526.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2135 16272..16577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.627485-UTR-L-elsbetiae_contig2135:16251..162711622815873.627485-UTR-L-elsbetiae_contig2135:16251..16271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2135 16252..16271 +
1691683160.1963115-UTR-L-elsbetiae_contig2135:16251..162711691683160.1963115-UTR-L-elsbetiae_contig2135:16251..16271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2135 16252..16271 +
1622815873.6491537-UTR-L-elsbetiae_contig2135:16577..166101622815873.6491537-UTR-L-elsbetiae_contig2135:16577..16610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2135 16578..16610 +
1691683160.2232442-UTR-L-elsbetiae_contig2135:16577..166101691683160.2232442-UTR-L-elsbetiae_contig2135:16577..16610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2135 16578..16610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.6374836-CDS-L-elsbetiae_contig2135:16271..165771622815873.6374836-CDS-L-elsbetiae_contig2135:16271..16577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2135 16272..16577 +
1691683160.2144601-CDS-L-elsbetiae_contig2135:16271..165771691683160.2144601-CDS-L-elsbetiae_contig2135:16271..16577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2135 16272..16577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2135.6526.1

>prot_L-elsbetiae_contig2135.6526.1 ID=prot_L-elsbetiae_contig2135.6526.1|Name=mRNA_L-elsbetiae_contig2135.6526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MYLKDLFLPNKPHGAKAWVSASKHTQSSGVERDLWQCGNLIQRFVLVLFF
GSDCFCLTCGLSIGPASPTEKHRNIAIKLSRTNRTLFPFLFSGSMPVAPV
V*
back to top

mRNA from alignment at L-elsbetiae_contig2135:16252..16610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2135.6526.1 ID=mRNA_L-elsbetiae_contig2135.6526.1|Name=mRNA_L-elsbetiae_contig2135.6526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=359bp|location=Sequence derived from alignment at L-elsbetiae_contig2135:16252..16610+ (Laminarionema elsbetiae ELsaHSoW15)
GAATATTTGGAAAATTTTCGATGTATTTAAAAGATCTTTTCCTTCCGAAC
AAGCCACACGGCGCGAAGGCCTGGGTTTCGGCTTCCAAGCACACCCAGTC
GTCGGGTGTGGAGAGAGATTTGTGGCAGTGTGGAAATCTGATCCAACGTT
TCGTCCTGGTTCTCTTTTTCGGGTCGGATTGCTTTTGTTTGACCTGTGGC
CTCAGCATCGGACCCGCGAGTCCAACCGAAAAACACAGAAACATCGCCAT
CAAGCTCTCTCGCACGAATCGAACACTTTTTCCTTTCTTGTTTTCTGGTT
CCATGCCGGTCGCCCCGGTGGTCTAGTGGTTTAACCTTGAACCCACTAGC
AGCAAAGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2135:16252..16610+

>mRNA_L-elsbetiae_contig2135.6526.1 ID=mRNA_L-elsbetiae_contig2135.6526.1|Name=mRNA_L-elsbetiae_contig2135.6526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig2135:16252..16610+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTTAAAAGATCTTTTCCTTCCGAACAAGCCACACGGCGCGAAGGC
CTGGGTTTCGGCTTCCAAGCACACCCAGTCGTCGGGTGTGGAGAGAGATT
TGTGGCAGTGTGGAAATCTGATCCAACGTTTCGTCCTGGTTCTCTTTTTC
GGGTCGGATTGCTTTTGTTTGACCTGTGGCCTCAGCATCGGACCCGCGAG
TCCAACCGAAAAACACAGAAACATCGCCATCAAGCTCTCTCGCACGAATC
GAACACTTTTTCCTTTCTTGTTTTCTGGTTCCATGCCGGTCGCCCCGGTG
GTCTAGATGTATTTAAAAGATCTTTTCCTTCCGAACAAGCCACACGGCGC
GAAGGCCTGGGTTTCGGCTTCCAAGCACACCCAGTCGTCGGGTGTGGAGA
GAGATTTGTGGCAGTGTGGAAATCTGATCCAACGTTTCGTCCTGGTTCTC
TTTTTCGGGTCGGATTGCTTTTGTTTGACCTGTGGCCTCAGCATCGGACC
CGCGAGTCCAACCGAAAAACACAGAAACATCGCCATCAAGCTCTCTCGCA
CGAATCGAACACTTTTTCCTTTCTTGTTTTCTGGTTCCATGCCGGTCGCC
CCGGTGGTCTAG
back to top