mRNA_L-elsbetiae_contig21349.6525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21349.6525.1
Unique NamemRNA_L-elsbetiae_contig21349.6525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21349.6525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21349contigL-elsbetiae_contig21349:576..1303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size728
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21349.6525.1prot_L-elsbetiae_contig21349.6525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21349 631..1035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.5779183-UTR-L-elsbetiae_contig21349:575..6301622815873.5779183-UTR-L-elsbetiae_contig21349:575..630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21349 576..630 +
1691683160.1628275-UTR-L-elsbetiae_contig21349:575..6301691683160.1628275-UTR-L-elsbetiae_contig21349:575..630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21349 576..630 +
1622815873.5992513-UTR-L-elsbetiae_contig21349:1035..13031622815873.5992513-UTR-L-elsbetiae_contig21349:1035..1303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21349 1036..1303 +
1691683160.1842616-UTR-L-elsbetiae_contig21349:1035..13031691683160.1842616-UTR-L-elsbetiae_contig21349:1035..1303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21349 1036..1303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.588894-CDS-L-elsbetiae_contig21349:630..10351622815873.588894-CDS-L-elsbetiae_contig21349:630..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21349 631..1035 +
1691683160.175877-CDS-L-elsbetiae_contig21349:630..10351691683160.175877-CDS-L-elsbetiae_contig21349:630..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21349 631..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21349.6525.1

>prot_L-elsbetiae_contig21349.6525.1 ID=prot_L-elsbetiae_contig21349.6525.1|Name=mRNA_L-elsbetiae_contig21349.6525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MCYVREPASDADFMAPRMSLGHEVVSVLSENGENQGCDASSAWCVSLECI
PEESESALADWWDDSERRREECAVLVPDNVSAHRQMILTGRKVPCSSYLS
AKGRRTPGDGAGGRKREGGDWSNGHMGRRVLLAC*
back to top

mRNA from alignment at L-elsbetiae_contig21349:576..1303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21349.6525.1 ID=mRNA_L-elsbetiae_contig21349.6525.1|Name=mRNA_L-elsbetiae_contig21349.6525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=728bp|location=Sequence derived from alignment at L-elsbetiae_contig21349:576..1303+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTCTGATCCTGCGCCTGGTGGTCGTGATGACCTTGATGTGTCTGGAG
CCGAGATGTGCTATGTGCGTGAGCCTGCCTCGGACGCAGATTTCATGGCC
CCTAGGATGAGTTTGGGGCATGAGGTAGTGTCGGTGCTTTCTGAGAATGG
AGAGAACCAAGGGTGTGATGCGAGTTCTGCCTGGTGTGTTTCGCTTGAGT
GCATTCCAGAAGAGTCTGAGTCGGCTTTGGCTGATTGGTGGGACGATTCC
GAGCGTCGCAGGGAGGAGTGTGCCGTGTTAGTGCCCGACAATGTTTCTGC
CCATCGGCAGATGATTCTCACCGGACGAAAGGTGCCGTGCTCTTCCTACT
TGTCGGCGAAAGGAAGGAGGACGCCAGGTGATGGTGCTGGCGGGCGAAAG
CGCGAAGGCGGGGACTGGTCGAATGGCCACATGGGGCGGAGAGTACTTTT
GGCTTGTTGACAGAGTCAATCCTTCAGGAGCACTCTCCTAACTCCCTTCC
AGAGGTTTTCGTGATTGGTATTTGATTTGGTTGTTGAGTTTCGTCTGATG
ACTTCTCTTGTGTGCAAATTGGCATGAATGACACTGCATTTGAATGTCTG
CTGATTGTTCTGCGCCAAGCATAGTGGGGGGGGAGTAGATATGTCACGAT
TCTTGCCGCAGCAACAGCAGAGATTTGGACGATTGGTTTTCGGTGTTTTT
CTGCACAGATCAGGGGAGCAGGGAGAAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig21349:576..1303+

>mRNA_L-elsbetiae_contig21349.6525.1 ID=mRNA_L-elsbetiae_contig21349.6525.1|Name=mRNA_L-elsbetiae_contig21349.6525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig21349:576..1303+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTATGTGCGTGAGCCTGCCTCGGACGCAGATTTCATGGCCCCTAG
GATGAGTTTGGGGCATGAGGTAGTGTCGGTGCTTTCTGAGAATGGAGAGA
ACCAAGGGTGTGATGCGAGTTCTGCCTGGTGTGTTTCGCTTGAGTGCATT
CCAGAAGAGTCTGAGTCGGCTTTGGCTGATTGGTGGGACGATTCCGAGCG
TCGCAGGGAGGAGTGTGCCGTGTTAGTGCCCGACAATGTTTCTGCCCATC
GGCAGATGATTCTCACCGGACGAAAGGTGCCGTGCTCTTCCTACTTGTCG
GCGAAAGGAAGGAGGACGCCAGGTGATGGTGCTGGCGGGCGAAAGCGCGA
AGGCGGGGACTGGTCGAATGGCCACATGGGGCGGAGAGTACTTTTGGCTT
GTTGAATGTGCTATGTGCGTGAGCCTGCCTCGGACGCAGATTTCATGGCC
CCTAGGATGAGTTTGGGGCATGAGGTAGTGTCGGTGCTTTCTGAGAATGG
AGAGAACCAAGGGTGTGATGCGAGTTCTGCCTGGTGTGTTTCGCTTGAGT
GCATTCCAGAAGAGTCTGAGTCGGCTTTGGCTGATTGGTGGGACGATTCC
GAGCGTCGCAGGGAGGAGTGTGCCGTGTTAGTGCCCGACAATGTTTCTGC
CCATCGGCAGATGATTCTCACCGGACGAAAGGTGCCGTGCTCTTCCTACT
TGTCGGCGAAAGGAAGGAGGACGCCAGGTGATGGTGCTGGCGGGCGAAAG
CGCGAAGGCGGGGACTGGTCGAATGGCCACATGGGGCGGAGAGTACTTTT
GGCTTGTTGA
back to top