mRNA_L-elsbetiae_contig2134.6524.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2134.6524.1 vs. uniprot
Match: D7G5H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H7_ECTSI) HSP 1 Score: 826 bits (2133), Expect = 4.700e-292 Identity = 454/621 (73.11%), Postives = 499/621 (80.35%), Query Frame = 1 Query: 1 SSKGGRRHVLMLPVNALVKGLNQVSMNDPLLDGWMGVSPAELARCR---NWEGAIQKCSAICIFIYRLINARPRSMEQSRTGH----PLTPGSRGXXXXRDQS-----SEDGAFQFGTQ--NAQPGV--SEHATATSSRLSPFFPGCCSG-NADVSETALPRRRKTTTTVNPMMNIFKSLPGGP--GTDFDSTTRGHPGFWPPYIRVHTANVLVENGDAFVHHAFMSRDIDYPWWYSIKGIVMRNRHLDVKGLFSHSYASEVFKSRTQIVSFIENYVEDENADELEGLIRTNKTLWGLSSGTSMDLGRGRRLSMFAIEEVDASVNIDPIDPPAAFRRVVVGEEFTEADALLPRPFSSVDIGHFLTVMQTKSIPALVCFSLPPALRDVKVFCGKQEPVSMVQYLSHPVFAEFEPNLPMVAGAGRGRTEPDRRNIVRSASAVSLTSGRAKGVRWADQVVSKQEDNKVLDALACPNLEAFLDEVTNQRRRTGAVEWSAEGEEEADWIEAVVEQLRTAKKTASSIAKARNAM-------AAKTRSSKGFGAAGAGLLEGRGEEENLRDVPEWVTQQLPGLLRLLEACRLLSNDDELLRTYEEESLPLHWMDVEKLGKSDTLHDTV 1785 +SKGGRRHVLMLPVNALVKGLNQVSMNDPLL+GWMGVSPAELAR + + E I+ + + + L PRS E++ G PLTPGSRG RD SED AFQFGTQ + P V S A++ + F P + DVSET LPRRR+TTTTVNPMMN+FK+L G G D DS TRGHPGFWPPYIRVHTANVLVENGDAFVHHAFMSRD+D+PWW+SIKGIVMRNRHLDVKGLFSHSYASEV+KSRTQ+V+FIENYVEDENAD+LE +I+TNK+LWGLS TS DLGRGRRLSMFAIEEVDASVNIDPIDPPAAFRRVVVGEEFTEADALLPRPFSSVDIGHFLTVMQTKSIPALVCFSLPPALRDVKVF KQEP+SMVQYLSHPVFAE+EPN+P VA A + R++IVRSASAVS S R+KGVRWADQVV KQE+ KVLDAL CPNLEAFLDEVTN R+RTGAVEWSAEG+EEADWIEAV+EQLRTAKKTAS IAKARNA+ AA+ R G A + E LR+VPEWVTQQLP LLRLLEACRLLSNDDELLRTYEEE+LPLHW DVEKLGKSDTLHD+ Sbjct: 59 ASKGGRRHVLMLPVNALVKGLNQVSMNDPLLEGWMGVSPAELARLQEELDAEKGIE--NRLPMLTSSLSKTIPRSAEKNMKGRAGNGPLTPGSRGS---RDSGGSRDLSEDAAFQFGTQAVSRSPTVQRSPPRAASNRWMHQFLPSRFRDTDVDVSETDLPRRRETTTTVNPMMNVFKALAGVALGGADMDSRTRGHPGFWPPYIRVHTANVLVENGDAFVHHAFMSRDVDHPWWFSIKGIVMRNRHLDVKGLFSHSYASEVYKSRTQVVTFIENYVEDENADDLESMIKTNKSLWGLSRDTSKDLGRGRRLSMFAIEEVDASVNIDPIDPPAAFRRVVVGEEFTEADALLPRPFSSVDIGHFLTVMQTKSIPALVCFSLPPALRDVKVFREKQEPISMVQYLSHPVFAEYEPNMPRVASAPG--LDQSRKSIVRSASAVS-PSARSKGVRWADQVVPKQEEQKVLDALECPNLEAFLDEVTNHRKRTGAVEWSAEGQEEADWIEAVLEQLRTAKKTASGIAKARNALTKNKAAAAAEQRGGGDGGFADRNVEEVEEALAKLREVPEWVTQQLPDLLRLLEACRLLSNDDELLRTYEEEALPLHWADVEKLGKSDTLHDSA 671 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2134.6524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2134.6524.1 >prot_L-elsbetiae_contig2134.6524.1 ID=prot_L-elsbetiae_contig2134.6524.1|Name=mRNA_L-elsbetiae_contig2134.6524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=592bp MLPVNALVKGLNQVSMNDPLLDGWMGVSPAELARCRNWEGAIQKCSAICIback to top mRNA from alignment at L-elsbetiae_contig2134:3591..21675- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2134.6524.1 ID=mRNA_L-elsbetiae_contig2134.6524.1|Name=mRNA_L-elsbetiae_contig2134.6524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=18085bp|location=Sequence derived from alignment at L-elsbetiae_contig2134:3591..21675- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2134:3591..21675- >mRNA_L-elsbetiae_contig2134.6524.1 ID=mRNA_L-elsbetiae_contig2134.6524.1|Name=mRNA_L-elsbetiae_contig2134.6524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3552bp|location=Sequence derived from alignment at L-elsbetiae_contig2134:3591..21675- (Laminarionema elsbetiae ELsaHSoW15)back to top |