mRNA_L-elsbetiae_contig2131.6521.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig2131.6521.1
Unique Name	mRNA_L-elsbetiae_contig2131.6521.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig2131.6521.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig2131.6521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig2131	contig	L-elsbetiae_contig2131:11496..12695 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	1200
Cds size	1200
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815873.1557941-CDS-L-elsbetiae_contig2131:11495..12695	1622815873.1557941-CDS-L-elsbetiae_contig2131:11495..12695	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig2131 11496..12695 +
1691683159.8846662-CDS-L-elsbetiae_contig2131:11495..12695	1691683159.8846662-CDS-L-elsbetiae_contig2131:11495..12695	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig2131 11496..12695 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig2131.6521.1	prot_L-elsbetiae_contig2131.6521.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig2131 11496..12695 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig2131:11496..12695+
coding sequence from alignment at L-elsbetiae_contig2131:11496..12695+

protein sequence of mRNA_L-elsbetiae_contig2131.6521.1

>prot_L-elsbetiae_contig2131.6521.1 ID=prot_L-elsbetiae_contig2131.6521.1|Name=mRNA_L-elsbetiae_contig2131.6521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=400bp
MPPPGRGLPSFPLLPQASTHRPSPSPHRHRHRQCHHHRRHRHRRRRHRRH
RPLCRRRSEWRLPAAPPGELPRSRIPPAAPQEGPSVPPTGELSSRRSHRL
LPRRRLEWRPPLTLPGKLLRNLRPAVSQTHLPASRPRELPRKTWTALQPR
LPPAQPGELSTHHPLLHPQPGWCLPPAQPGELLTHHPLLRRHPGSCLPPA
QPGEPPIRHSLLHPQPGWCRPPAQPGELSTHHPLLHRHLGSCLPPAQPGE
LLTHHPLLRRHPGSCLPPAQPGEPPIRHPLLHPQPGWCLPPAQPGEPPRI
PRAAIQGRLLLSQPRERRTSLPAGYHLHLRFHLRFQERFPAAPPGGVPRN
PQAATRRRLLRPVSQPRELPRISRSLQAGFQGRLFLPSCLFLAARLPPCP

mRNA from alignment at L-elsbetiae_contig2131:11496..12695+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig2131.6521.1 ID=mRNA_L-elsbetiae_contig2131.6521.1|Name=mRNA_L-elsbetiae_contig2131.6521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:11496..12695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCACCTGGGCGGGGCCTCCCGAGCTTTCCTCTGCTTCCGCAGGC
TTCGACTCATCGCCCCAGCCCCAGCCCCCACCGCCACCGCCACCGGCAAT
GTCACCACCATCGCCGGCACCGCCATCGCCGTCGCCGCCATCGCCGTCAC
CGCCCTCTCTGTCGTCGGCGCTCTGAGTGGCGCCTTCCTGCGGCTCCGCC
GGGGGAGCTGCCGAGGTCGAGGATCCCGCCAGCGGCACCTCAGGAAGGTC
CTTCTGTGCCTCCAACGGGGGAGCTGTCGAGTCGCCGTAGCCACCGTCTC
CTTCCCCGTCGGCGTCTTGAGTGGCGCCCTCCTCTGACTCTGCCGGGGAA
GCTGCTACGGAATCTGAGGCCGGCGGTATCTCAGACACACCTTCCCGCGT
CTCGACCGCGGGAGTTGCCGAGGAAGACGTGGACGGCGCTTCAGCCACGC
CTTCCCCCGGCTCAACCAGGGGAGCTATCGACTCACCACCCCCTTCTTCA
TCCGCAGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCTGTTGA
CTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCCTCCGGCT
CAACCAGGGGAGCCGCCCATTCGCCACTCCCTTCTTCATCCGCAGCCTGG
GTGGTGCCGTCCTCCGGCTCAACCAGGGGAGCTATCGACTCATCATCCCC
TTCTTCATCGGCACCTTGGGTCGTGCCTTCCCCCGGCTCAACCAGGGGAG
CTGTTGACTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCC
CCCGGCTCAACCAGGGGAGCCGCCCATTCGCCATCCCCTTCTTCATCCAC
AGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCCGCCGAGGATC
CCGAGGGCGGCAATTCAGGGACGCCTTCTTTTGTCTCAACCGCGGGAACG
GCGGACGAGTCTACCGGCGGGATATCACCTTCACCTTCGCTTTCACCTCC
GCTTTCAGGAGCGCTTTCCTGCGGCTCCGCCAGGGGGAGTACCGCGGAAT
CCGCAGGCGGCAACTCGGAGACGCCTTCTCCGTCCTGTGTCACAACCGCG
GGAGCTACCGAGGATATCGAGGAGTCTGCAGGCGGGTTTTCAGGGACGTC
TTTTTCTTCCTTCGTGCCTGTTTCTTGCTGCCCGTCTCCCTCCCTGCCCC

Coding sequence (CDS) from alignment at L-elsbetiae_contig2131:11496..12695+

>mRNA_L-elsbetiae_contig2131.6521.1 ID=mRNA_L-elsbetiae_contig2131.6521.1|Name=mRNA_L-elsbetiae_contig2131.6521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2400bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:11496..12695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCACCTGGGCGGGGCCTCCCGAGCTTTCCTCTGCTTCCGCAGGC
TTCGACTCATCGCCCCAGCCCCAGCCCCCACCGCCACCGCCACCGGCAAT
GTCACCACCATCGCCGGCACCGCCATCGCCGTCGCCGCCATCGCCGTCAC
CGCCCTCTCTGTCGTCGGCGCTCTGAGTGGCGCCTTCCTGCGGCTCCGCC
GGGGGAGCTGCCGAGGTCGAGGATCCCGCCAGCGGCACCTCAGGAAGGTC
CTTCTGTGCCTCCAACGGGGGAGCTGTCGAGTCGCCGTAGCCACCGTCTC
CTTCCCCGTCGGCGTCTTGAGTGGCGCCCTCCTCTGACTCTGCCGGGGAA
GCTGCTACGGAATCTGAGGCCGGCGGTATCTCAGACACACCTTCCCGCGT
CTCGACCGCGGGAGTTGCCGAGGAAGACGTGGACGGCGCTTCAGCCACGC
CTTCCCCCGGCTCAACCAGGGGAGCTATCGACTCACCACCCCCTTCTTCA
TCCGCAGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCTGTTGA
CTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCCTCCGGCT
CAACCAGGGGAGCCGCCCATTCGCCACTCCCTTCTTCATCCGCAGCCTGG
GTGGTGCCGTCCTCCGGCTCAACCAGGGGAGCTATCGACTCATCATCCCC
TTCTTCATCGGCACCTTGGGTCGTGCCTTCCCCCGGCTCAACCAGGGGAG
CTGTTGACTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCC
CCCGGCTCAACCAGGGGAGCCGCCCATTCGCCATCCCCTTCTTCATCCAC
AGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCCGCCGAGGATC
CCGAGGGCGGCAATTCAGGGACGCCTTCTTTTGTCTCAACCGCGGGAACG
GCGGACGAGTCTACCGGCGGGATATCACCTTCACCTTCGCTTTCACCTCC
GCTTTCAGGAGCGCTTTCCTGCGGCTCCGCCAGGGGGAGTACCGCGGAAT
CCGCAGGCGGCAACTCGGAGACGCCTTCTCCGTCCTGTGTCACAACCGCG
GGAGCTACCGAGGATATCGAGGAGTCTGCAGGCGGGTTTTCAGGGACGTC
TTTTTCTTCCTTCGTGCCTGTTTCTTGCTGCCCGTCTCCCTCCCTGCCCC
ATGCCGCCACCTGGGCGGGGCCTCCCGAGCTTTCCTCTGCTTCCGCAGGC
TTCGACTCATCGCCCCAGCCCCAGCCCCCACCGCCACCGCCACCGGCAAT
GTCACCACCATCGCCGGCACCGCCATCGCCGTCGCCGCCATCGCCGTCAC
CGCCCTCTCTGTCGTCGGCGCTCTGAGTGGCGCCTTCCTGCGGCTCCGCC
GGGGGAGCTGCCGAGGTCGAGGATCCCGCCAGCGGCACCTCAGGAAGGTC
CTTCTGTGCCTCCAACGGGGGAGCTGTCGAGTCGCCGTAGCCACCGTCTC
CTTCCCCGTCGGCGTCTTGAGTGGCGCCCTCCTCTGACTCTGCCGGGGAA
GCTGCTACGGAATCTGAGGCCGGCGGTATCTCAGACACACCTTCCCGCGT
CTCGACCGCGGGAGTTGCCGAGGAAGACGTGGACGGCGCTTCAGCCACGC
CTTCCCCCGGCTCAACCAGGGGAGCTATCGACTCACCACCCCCTTCTTCA
TCCGCAGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCTGTTGA
CTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCCTCCGGCT
CAACCAGGGGAGCCGCCCATTCGCCACTCCCTTCTTCATCCGCAGCCTGG
GTGGTGCCGTCCTCCGGCTCAACCAGGGGAGCTATCGACTCATCATCCCC
TTCTTCATCGGCACCTTGGGTCGTGCCTTCCCCCGGCTCAACCAGGGGAG
CTGTTGACTCACCATCCCCTTCTTCGTCGGCACCCTGGGTCGTGCCTTCC
CCCGGCTCAACCAGGGGAGCCGCCCATTCGCCATCCCCTTCTTCATCCAC
AGCCTGGGTGGTGCCTTCCCCCGGCTCAACCAGGGGAGCCGCCGAGGATC
CCGAGGGCGGCAATTCAGGGACGCCTTCTTTTGTCTCAACCGCGGGAACG
GCGGACGAGTCTACCGGCGGGATATCACCTTCACCTTCGCTTTCACCTCC
GCTTTCAGGAGCGCTTTCCTGCGGCTCCGCCAGGGGGAGTACCGCGGAAT
CCGCAGGCGGCAACTCGGAGACGCCTTCTCCGTCCTGTGTCACAACCGCG
GGAGCTACCGAGGATATCGAGGAGTCTGCAGGCGGGTTTTCAGGGACGTC
TTTTTCTTCCTTCGTGCCTGTTTCTTGCTGCCCGTCTCCCTCCCTGCCCC