mRNA_L-elsbetiae_contig2131.6520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2131.6520.1
Unique NamemRNA_L-elsbetiae_contig2131.6520.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2131.6520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2131contigL-elsbetiae_contig2131:10027..11340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size573
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.1087139-CDS-L-elsbetiae_contig2131:10027..102971622815873.1087139-CDS-L-elsbetiae_contig2131:10027..10297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 10028..10297 -
1691683159.8604143-CDS-L-elsbetiae_contig2131:10027..102971691683159.8604143-CDS-L-elsbetiae_contig2131:10027..10297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 10028..10297 -
1622815873.1218102-CDS-L-elsbetiae_contig2131:11040..113401622815873.1218102-CDS-L-elsbetiae_contig2131:11040..11340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 11041..11340 -
1691683159.8726132-CDS-L-elsbetiae_contig2131:11040..113401691683159.8726132-CDS-L-elsbetiae_contig2131:11040..11340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 11041..11340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2131.6520.1prot_L-elsbetiae_contig2131.6520.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2131 10028..11340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2131.6520.1

>prot_L-elsbetiae_contig2131.6520.1 ID=prot_L-elsbetiae_contig2131.6520.1|Name=mRNA_L-elsbetiae_contig2131.6520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
SSSFSSPTTAAATVAGEVESAEVDEGADETSAAESESRPVGVGDGDGNGD
GRNEGQDQGQGGGDGLIPYTAGASASEGGGIAGIEGQPQGGGLEQGGGEE
PDEGTPQGGGWDWGAPPAAGGGSGSMAGGADALEPEESTAPAPPEGQAEG
HDEESAPPAAASGELVPSASTSAQGNSSASAAGADGLDPE
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mRNA from alignment at L-elsbetiae_contig2131:10027..11340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2131.6520.1 ID=mRNA_L-elsbetiae_contig2131.6520.1|Name=mRNA_L-elsbetiae_contig2131.6520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:10027..11340- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCTAGCTTTTCTTCTCCGACAACGGCGGCAGCAACGGTCGCGGGGGA
GGTTGAATCGGCAGAGGTTGACGAAGGAGCCGACGAGACGAGCGCCGCCG
AGAGCGAATCGAGACCTGTCGGTGTCGGCGACGGCGACGGTAACGGTGAC
GGTCGAAATGAAGGTCAAGATCAAGGCCAAGGTGGTGGAGATGGTCTTAT
CCCGTACACAGCTGGCGCTTCAGCGTCGGAGGGTGGCGGTATAGCGGGCA
TTGAAGGCCAACCCCAAGGCGGGGGCCTTGAGCAAGGAGGAGGAGAAGAG
GCAAGCGACGGGCGGGGTGTTAGTGTTGTTGCTTGCCGTGCACTCCTTTG
AACACATACATATTGCGATGTATATTCATTGGTGGATTACCGTTCCTGCC
TCCACTCGAGACACTATTGTAGAGGCACCACCACCACCAACGCTTTGTGC
ACTTTTGGCCTGTTGTTTTACATACATACAAAATGTTTGAATCGGTATTT
CTGGGGGGAATCGCCGTGAGTGCACAGCAAATCCAGATTTAAGGTTTCGC
TAGTGCTTGGTATTGGTACAGTATTGTTGTGTGGTACATGTCGTTAAGGT
ATGAAATGTGTTTAGCAATATGGTGTGGTGAGGGCTCTGAATGAAACGTG
ACATGCTCCATTTTATCGTTAGGATTTTAGACGAAAATTTCTTGCTCCCC
CCCCTCCCCCCCCCCCCGTATGACCTTTCATGATCAAGCCACCCCGTCGA
TCGCTCGATGCCACTTATAGGGGTACTTTTGTTGGTTTGATCTGGTCTTA
TCAACAAATGAAGGTGACCGCGCCTCGTCCAATTTGCGTCGCCTCCTCAA
GCGCTCCTCGTTTCCCCCCCAACTTTCTTGTGTCTTCCAACTTTGTATGA
GATCTATCTCCTCTGGTTTGTGTCCGCATGTGGACCTCCTTATATCTTAT
TCCTTCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTGCGTTATTC
TACTCCCTGCTCTCTCTCTTTTTTTTCTTTCCGGTAAATACAGCCTGACG
AGGGTACACCCCAGGGCGGGGGTTGGGACTGGGGTGCGCCGCCGGCAGCC
GGAGGCGGCAGCGGCAGCATGGCCGGCGGCGCGGACGCCCTTGAACCAGA
GGAAAGCACCGCACCAGCCCCGCCAGAGGGTCAGGCCGAGGGCCACGATG
AAGAGTCGGCGCCTCCCGCTGCGGCGTCGGGCGAGCTTGTTCCCTCAGCG
TCTACGTCAGCGCAGGGCAACAGCAGCGCGAGCGCGGCCGGCGCCGACGG
CCTTGATCCGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2131:10027..11340-

>mRNA_L-elsbetiae_contig2131.6520.1 ID=mRNA_L-elsbetiae_contig2131.6520.1|Name=mRNA_L-elsbetiae_contig2131.6520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:10027..11340- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCTAGCTTTTCTTCTCCGACAACGGCGGCAGCAACGGTCGCGGGGGA
GGTTGAATCGGCAGAGGTTGACGAAGGAGCCGACGAGACGAGCGCCGCCG
AGAGCGAATCGAGACCTGTCGGTGTCGGCGACGGCGACGGTAACGGTGAC
GGTCGAAATGAAGGTCAAGATCAAGGCCAAGGTGGTGGAGATGGTCTTAT
CCCGTACACAGCTGGCGCTTCAGCGTCGGAGGGTGGCGGTATAGCGGGCA
TTGAAGGCCAACCCCAAGGCGGGGGCCTTGAGCAAGGAGGAGGAGAAGAG
TCGTCTAGCTTTTCTTCTCCGACAACGGCGGCAGCAACGGTCGCGGGGGA
GGTTGAATCGGCAGAGGTTGACGAAGGAGCCGACGAGACGAGCGCCGCCG
AGAGCGAATCGAGACCTGTCGGTGTCGGCGACGGCGACGGTAACGGTGAC
GGTCGAAATGAAGGTCAAGATCAAGGCCAAGGTGGTGGAGATGGTCTTAT
CCCGTACACAGCTGGCGCTTCAGCGTCGGAGGGTGGCGGTATAGCGGGCA
TTGAAGGCCAACCCCAAGGCGGGGGCCTTGAGCAAGGAGGAGGAGAAGAG
CCTGACGAGGGTACACCCCAGGGCGGGGGTTGGGACTGGGGTGCGCCGCC
GGCAGCCGGAGGCGGCAGCGGCAGCATGGCCGGCGGCGCGGACGCCCTTG
AACCAGAGGAAAGCACCGCACCAGCCCCGCCAGAGGGTCAGGCCGAGGGC
CACGATGAAGAGTCGGCGCCTCCCGCTGCGGCGTCGGGCGAGCTTGTTCC
CTCAGCGTCTACGTCAGCGCAGGGCAACAGCAGCGCGAGCGCGGCCGGCG
CCGACGGCCTTGATCCGGAGCCTGACGAGGGTACACCCCAGGGCGGGGGT
TGGGACTGGGGTGCGCCGCCGGCAGCCGGAGGCGGCAGCGGCAGCATGGC
CGGCGGCGCGGACGCCCTTGAACCAGAGGAAAGCACCGCACCAGCCCCGC
CAGAGGGTCAGGCCGAGGGCCACGATGAAGAGTCGGCGCCTCCCGCTGCG
GCGTCGGGCGAGCTTGTTCCCTCAGCGTCTACGTCAGCGCAGGGCAACAG
CAGCGCGAGCGCGGCCGGCGCCGACGGCCTTGATCCGGAG
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