mRNA_L-elsbetiae_contig2131.6519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2131.6519.1
Unique NamemRNA_L-elsbetiae_contig2131.6519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2131.6519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2131contigL-elsbetiae_contig2131:8334..10000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.05525-CDS-L-elsbetiae_contig2131:8334..85221622815873.05525-CDS-L-elsbetiae_contig2131:8334..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 8335..8522 -
1691683159.8423913-CDS-L-elsbetiae_contig2131:8334..85221691683159.8423913-CDS-L-elsbetiae_contig2131:8334..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 8335..8522 -
1622815873.0684602-CDS-L-elsbetiae_contig2131:9864..100001622815873.0684602-CDS-L-elsbetiae_contig2131:9864..10000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 9865..10000 -
1691683159.851532-CDS-L-elsbetiae_contig2131:9864..100001691683159.851532-CDS-L-elsbetiae_contig2131:9864..10000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2131 9865..10000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2131.6519.1prot_L-elsbetiae_contig2131.6519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2131 8335..10000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2131.6519.1

>prot_L-elsbetiae_contig2131.6519.1 ID=prot_L-elsbetiae_contig2131.6519.1|Name=mRNA_L-elsbetiae_contig2131.6519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GVEGEVPRGQPAASEEGSGPESGSGSGGWNWGDGAPPTPASASASGSEGL
PPAPEVIPTPETAGVVAAESGSGNNSTAGFADVSQQEEGEEEGSVQMLEG
AEEEGGAG
back to top

mRNA from alignment at L-elsbetiae_contig2131:8334..10000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2131.6519.1 ID=mRNA_L-elsbetiae_contig2131.6519.1|Name=mRNA_L-elsbetiae_contig2131.6519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1667bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:8334..10000- (Laminarionema elsbetiae ELsaHSoW15)
GGAGTGGAAGGGGAGGTGCCGCGGGGACAACCCGCGGCGAGCGAGGAGGG
ATCGGGACCAGAATCAGGATCAGGATCAGGGGGGTGGAACTGGGGGGACG
GCGCGCCCCCTACTCCGGCGTCGGCATCAGCGTCGGGTGAGGCGGTTTTG
CGCGTGATACGTGTTGATGTTGACGAACAAGCGAAAATATTGGAAGGAAA
AGCTGCTGTTGTTTTGTGTGTCCGCCCACCTGAGTCAGCGGAAGGATCTC
CCCTGGTGTGCCCAGCGACCAGCGGGAGGGAGGGCAATACCGTAAGTGTG
CGAAGGTTCGCACCCCCGTGTTAGCATTTTTCTAAAGCGTATTTCTCCAC
AACCAACCGTAAGTGTGCGAAGGTTCGCACCCCCGTGTTAGCATTTTTCT
AAAGCGTATTTCTCCACAACCAGGGGGGTGCGAACACTAACTGATACCTC
TCTGGAAAGCCCCCGGCGAGACGTTTCGAAAACCACCCTTTTCGGCAGTG
GCACCCTCCTGGTTGTGGAGAAATACGCTACAGAAAAACGCCAACACGGG
GGTGCGAACCTTCGCACACTTACGGTATGCTCCCTCAAAAGATCCGGACT
TGCGCGCGGGGATGCGCGTGAGGGTTTTTATGCCGTACTTTTAACGTCGT
GTGGATGTCTCGCGAGTGTTTGGGCAGGACAGAGGGAGATTGTGTCCGGC
GACGAAATGGCTTATTCCTAGCAGTCGTGCGGGGTCGTAGATCCTCCTCC
CTTTTGCTGCCCCCTTCTCTTGTACGCGCCTCGCTCACACCTGGCACGTT
TCCGCTGCTTGTCTCTTTGTCGATACATTTTCCAAGTTGCCCGTCGCAAA
CCAAAGCGGGCTTTTGTATGGTGTGTGTATGTATGTATTATTTCGTGTGC
GCGTAGCCCCCGATACCTTGTTGTGCTGAAGAAATGCCGGTGTGGGCGGG
TGGGGTAGGCAGGTTTATGGAATGCAGAAGGGAGCGAGGACCGATATAAT
CGTTCCCTAAACATTTCAGGGTACTGTAGTCCTCGGAAACGCTTTTTTAG
GCGGATACAGACTGCACGGTACTACTCCCATATGTCGGTGCTTTTTTGGC
GGTTGACGGTCTCTCGCTATTTTGACGCAGTAAGCTTGCATCGGGCAACA
CTCCGTATGGTAAGGTACGTAGTTGCGTGGCTCGAAAGCTCTGTCGCGCG
TGGATAGCAGTGCGACTGAAAACGAAAGGCGTGGATGGAGTGAGATCAGA
GCCTCTATGCAGCGCGTACATTTAGGGTGAGTAGACCTCAGTAGAAGATG
AAGGTGTAATGTGGCTCTCCTCTCGCTTTTGCTGTGCCTGGCGTTCCTTC
GGGCTCTGAAGTAAAGTTGCCCGCCAATCACCAGGAGGCGTGTTCCTTGG
GCATCCTGAAACCGTTCTCGTACGTACGTACATTATCGTGTGTTTCGTGT
GCTTCGCGTGTTCCGTGTGTGTTCGCAGGGAGCGAGGGCCTGCCACCAGC
CCCCGAGGTCATCCCCACCCCTGAGACCGCTGGCGTGGTCGCGGCCGAGA
GCGGCAGCGGCAATAACAGCACGGCCGGGTTTGCGGACGTGTCCCAACAA
GAGGAAGGAGAAGAAGAGGGTAGTGTGCAGATGCTGGAGGGAGCTGAAGA
GGAAGGGGGGGCAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2131:8334..10000-

>mRNA_L-elsbetiae_contig2131.6519.1 ID=mRNA_L-elsbetiae_contig2131.6519.1|Name=mRNA_L-elsbetiae_contig2131.6519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig2131:8334..10000- (Laminarionema elsbetiae ELsaHSoW15)
GGAGTGGAAGGGGAGGTGCCGCGGGGACAACCCGCGGCGAGCGAGGAGGG
ATCGGGACCAGAATCAGGATCAGGATCAGGGGGGTGGAACTGGGGGGACG
GCGCGCCCCCTACTCCGGCGTCGGCATCAGCGTCGGGGAGTGGAAGGGGA
GGTGCCGCGGGGACAACCCGCGGCGAGCGAGGAGGGATCGGGACCAGAAT
CAGGATCAGGATCAGGGGGGTGGAACTGGGGGGACGGCGCGCCCCCTACT
CCGGCGTCGGCATCAGCGTCGGGGAGCGAGGGCCTGCCACCAGCCCCCGA
GGTCATCCCCACCCCTGAGACCGCTGGCGTGGTCGCGGCCGAGAGCGGCA
GCGGCAATAACAGCACGGCCGGGTTTGCGGACGTGTCCCAACAAGAGGAA
GGAGAAGAAGAGGGTAGTGTGCAGATGCTGGAGGGAGCTGAAGAGGAAGG
GGGGGCAGGAGGAGCGAGGGCCTGCCACCAGCCCCCGAGGTCATCCCCAC
CCCTGAGACCGCTGGCGTGGTCGCGGCCGAGAGCGGCAGCGGCAATAACA
GCACGGCCGGGTTTGCGGACGTGTCCCAACAAGAGGAAGGAGAAGAAGAG
GGTAGTGTGCAGATGCTGGAGGGAGCTGAAGAGGAAGGGGGGGCAGGA
back to top