mRNA_L-elsbetiae_contig213.6509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig213.6509.1
Unique NamemRNA_L-elsbetiae_contig213.6509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig213.6509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig213contigL-elsbetiae_contig213:14367..18546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1249
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig213.6509.1prot_L-elsbetiae_contig213.6509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig213 17565..18506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.2094057-UTR-L-elsbetiae_contig213:14366..146091622815872.2094057-UTR-L-elsbetiae_contig213:14366..14609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 14367..14609 -
1691683159.2117186-UTR-L-elsbetiae_contig213:14366..146091691683159.2117186-UTR-L-elsbetiae_contig213:14366..14609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 14367..14609 -
1622815872.2203777-UTR-L-elsbetiae_contig213:17540..175641622815872.2203777-UTR-L-elsbetiae_contig213:17540..17564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 17541..17564 -
1691683159.221479-UTR-L-elsbetiae_contig213:17540..175641691683159.221479-UTR-L-elsbetiae_contig213:17540..17564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 17541..17564 -
1622815872.246006-UTR-L-elsbetiae_contig213:18506..185461622815872.246006-UTR-L-elsbetiae_contig213:18506..18546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 18507..18546 -
1691683159.2394438-UTR-L-elsbetiae_contig213:18506..185461691683159.2394438-UTR-L-elsbetiae_contig213:18506..18546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 18507..18546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.2346494-CDS-L-elsbetiae_contig213:17564..185061622815872.2346494-CDS-L-elsbetiae_contig213:17564..18506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 17565..18506 -
1691683159.2304294-CDS-L-elsbetiae_contig213:17564..185061691683159.2304294-CDS-L-elsbetiae_contig213:17564..18506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 17565..18506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig213.6509.1

>prot_L-elsbetiae_contig213.6509.1 ID=prot_L-elsbetiae_contig213.6509.1|Name=mRNA_L-elsbetiae_contig213.6509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MVNVFNKKCSHPGCTKQPSFSVEGMKKAELCAQHAREGMVDVVSKRCGHP
GCNTQPSYGVEGTKKAELCAQHAREGMVDVRSKKCGHPGCNTHPSYGLEG
TKKAELCAQHAKEGMVHVYNKRCGHPGCTKQPSYGVDGTKKAELCAQHAR
EGMVNVFNKKCSHPGCDTKPSTCFANGKKREFCSQHVKQGMVDMTRHRSG
RGSGSGGRDELDVGVSVRQPTTKKRSRQAGAVPPVAIAVKSEEEQDDFTG
PSSGTTAGPGKRARLVSFTPSVPAAVKPEATRKRAAFLAKNASSSDSRVE
SEVAAETGVTLST*
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mRNA from alignment at L-elsbetiae_contig213:14367..18546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig213.6509.1 ID=mRNA_L-elsbetiae_contig213.6509.1|Name=mRNA_L-elsbetiae_contig213.6509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4180bp|location=Sequence derived from alignment at L-elsbetiae_contig213:14367..18546- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGGCTGAGCGCTGCGCCCAGCACGCCAGGGAGGGGATGGTGAACG
TGTTCAACAAGAAGTGTAGCCACCCAGGGTGCACCAAGCAGCCGTCGTTC
AGCGTGGAAGGGATGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAGGGA
GGGGATGGTGGACGTCGTCAGCAAGAGATGTGGCCACCCGGGGTGCAACA
CGCAGCCGTCGTACGGCGTGGAAGGGACGAAGAAGGCTGAGCTCTGCGCC
CAGCACGCCAGGGAGGGGATGGTGGACGTGAGGAGCAAGAAGTGTGGCCA
CCCAGGGTGCAACACACACCCGTCGTACGGCTTGGAAGGAACGAAGAAGG
CTGAGCTCTGCGCCCAGCACGCCAAGGAGGGGATGGTTCACGTGTATAAC
AAGAGGTGTGGCCACCCAGGGTGCACCAAGCAGCCGTCGTACGGCGTGGA
TGGGACGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAGGGAGGGGATGG
TGAACGTGTTCAACAAGAAGTGTAGCCACCCAGGGTGCGACACGAAGCCG
TCAACTTGTTTTGCCAATGGAAAAAAGAGAGAATTCTGCTCCCAACACGT
CAAGCAGGGCATGGTGGATATGACCCGCCATAGATCTGGTCGGGGTAGCG
GTAGCGGTGGGCGTGACGAACTTGATGTGGGTGTCTCCGTTCGCCAGCCC
ACGACGAAGAAGCGATCCCGGCAGGCCGGCGCCGTTCCTCCGGTGGCGAT
CGCCGTCAAATCAGAGGAAGAACAGGACGACTTCACAGGACCTTCCTCCG
GCACAACCGCAGGACCTGGTAAGCGAGCTCGCTTGGTTAGTTTCACCCCC
TCGGTCCCTGCGGCAGTCAAGCCAGAGGCCACGCGGAAAAGGGCTGCTTT
CCTCGCAAAGAACGCTTCCTCCTCGGACTCACGCGTGGAGTCAGAGGTGG
CTGCCGAAACAGGAGTTACTTTGTCGACCTAGGAAGTATGCGGGTGCTGG
CTACAGGTACGGAGGGAGCAAGTAGTGGTGTGTTTGGCTGCTGTGTAGGT
AGATATAGATACATAGCACTCGAGGTTTATTTTCGCGTTTTTTCCGTGTC
TCGTGTGACACTGTTCGTGCCAGATCCGACCCGCCGTTGGGAGCTAGCTC
GTTTTGATTGGTATATGTACATAAATGTAACGCGACAGAAGCAACAGCAG
GGAGCTTGTTCCCCCACAGAAGTGGTCGGAGCGTTGTGTACCATGCATAC
CACCTAGCTTAACCCTCTTAGTACTGGAGACACAACTCAATTGTTGCGGA
TATCTCAAAAATGTCGGGAACAAAATCGCCGTGATTCGTACTTTCCGCGG
CGCCCCCGGCGGTCCAGCCGTTGGAGCCGCACAGCACACACTGCTTTGCT
GTCACTCTTGAGAATCGCCGTCTGCTGAGCTTCGAGCGGGTTGCGTCGCC
CGCCACGCTCTATTGTGTGTTGCGAGGGCTGCTTCGTGTGTTTACACAGG
CACAGCTCAGGGTTCACGTCATCATGTTTCTACAGCAGAAAAGTCTGTAT
TGTGTATCTAGTACGCTAAGACAGTTTGTACTGCGTTTCATTATACTTTT
TTTCTCCAAACGGTTTGGACAGTTTGACTTTCGTTTTAAATGCAATTTTG
CTCCAAATGATGTCGGGGCTCCGCACGCAGCTTCAAAATAATGGAGAGAT
TGTTGTTTCTCGGCCAATCAGTGGGCACCCAGAAGGCGCGATAACTTTTC
GGTGATAATTTGTTTTCAGAGGGCTGGCGTACTAAAAGGGTTGGTTATGT
CATCTTCTTCCCGTGGCACTCTATGTGGTTTTGGCATTCCTGCTACATAC
TGCTACAATACACGACAGTTTGTTGTGTCGAAGAGTCTAACGTCTCGCTG
CAATTGAGCGGTGCAATTCAAACGGTTTCCCTGTTCTTTTTTTCTTCTAC
ATACACCCATGCTTGTGGAAGCATAATCTTTCACAAAAATCTTGATCTTT
TGATAAAGATTTTCCTGCCAATATTCGGCTAAAGAAGACGTTTTTCCAGC
CACTATGGGGGAAAAATATTGATTCGCTCGAACTTTTCAACCGCGGTGGA
AATTGTTCTCGCCGGTTGTCACACGATTTATGCTGACTTAACATCAATGC
GCCACGAAACTAGTACGTAGCGAGCTCGAAAAATGGCCCCAACCAAACGA
AAAGCTTCCGTGTTGGTATGTTAGCCGTCGAATCGTACCGAAGGCTCCTC
TTAGGCATACAAAAACTTTGTCTAGGCGTACACAAGTAGCGGCGGCGCAT
TTCACACCGCAACTTGCTCGCCGCAACGGCCAAAAAAACCGCCGACGGAG
CAAGCTCACTACAACGCAGACCAGCTCTCGCCCGCTAGACCATTTATGCA
TGTCAAAGCTTATTGGCTGTCACCTCCATAACGGTTTCTCATCCGGATGG
ACGTGGGTTGGCAGTGGGCGCCTTCACTCGGCAGCAAATCGCATCGCCGT
GGACAAGAGTGTTGTCACCTCCACAAACGTATCTCATCCGGATGGGCGTG
GGTTGGCAGTGGGTGCCTTCAGTCGGCAGCAAATCGCATCGCTGTGGACA
TGAGTGTGCAAAACGCGAAAAATCAGGCCTCTGTTTTTCACTTGAGTACA
GAATACTTGTTCACCCGCTAAAAAAAGAACACGCATAACACTCGTGTCCA
CGGCGATGCGATTTGCTGCCGGCTGAAGGCGCCCGCTGCCAACCCACGTC
CATCCGGATGAGAAACGTTTATGGAGGTGACAGCCAAGAAGGTATCACAT
GGATATATATATGGTCTAGCGGGCGAGAGCTCGACTGCACACGTCGTTTG
CAGGCGTTTTTTGTGCGATTTCAAGGCGCAAACAATGCTTTATCCAGACA
CCCTGCGCAAACGTTTTTTTGCCACACGACTGACGGGCTCGAGCCATATA
CAAGCGGCTAGTACGTTGACGCAAATGCTCTAGGGTTATCCGAAGCAGTT
TACAAAGTCGTCACGTTCAGTATTGAGGGCGCAGTGGTCGGTGTTGGCGA
CGGGAGTCTGCAGGAGAAATGATCCCGCCGCCTCCGGGCAAGCTTTTGTC
GAGCTGCGAGATGGTCAAATCTTTGCCAAACATTTGCTCGAAAGTCAAAC
ATTTTGCCGGAAATCCAATCTTGGGGAAGATTGTTTTATAGATTTTCTCC
CATAAACAGACGAAATAAAAATCTTGCTCAAAGATCAAGATTTTTGTGAA
AGATTTAGCTTCCATAAACATGGGTGATAGTCGGATGACTTTTCTGTTTT
TGCGTACATTCGATTTTCTGGAAGCGAACAACCGCACCCCCGAGCGAAGT
ATGTGCATTGTGTTAAGCCCTAACTGTTGATTGGAAGGTTGGGAAGGCAG
TTGCAGCTCAAGATTAAACAAAATAACTCAGAACCAACTCGGCGCGAGGG
CAGGGATTGTTTGTATGTTCGAAGTGATATATCAAGGCGGAGATCAACGC
CAGATGTTCCGAACACATACATACATCATTCACGCTAACTCTTCCGAGTG
GCTCGATCAAATGATCATCTTACTTACTGGTGCTTGCATCTTTCTTCTTT
TGGCCGTTGACATGCTGGAAGCCTGTCTTGAACGCCGTCCGGAATTGTGC
CTCTCATCAACTCAATGAGTTCGACGGGAATGAGACATGCAATGCTCGTT
GTTTTTCTGTGGGAAGCCGCCTAAATAAATCAGACTTTCGTATTCAAAAG
ACTCCTGAGCTTGTCTTGTGTGGGAGGTTGCGGAGCAGCTTACACGTTGG
AGAAGTAATAGCCTTCCGACTGACTTAGTTCTGCATTACAGCTATGCGAG
TATCTGGCGGGCATCTCAAACCTTACATACCGCACCCCCTTACTCTGTTT
TGCTTTTACCTTTGCTGTTCTTTGCGATGATGGGCAGAGATGAGGAGACT
CGTGCGATGGATATTGACCACTTCCGGGCCAGCTTCCATGTTTGCCGTAA
GGAATATTCGATCCATCTCGGTGTGGTATTTTGCATTCCATTTTCCCGTT
CGCAGAGCATCGGTGTAACGTAGGGTCCGGCGAGTGACCGATGTGTCTGC
TTCATGAGATTGTGGTGTTCTGTCACATCCGTCCACATTATGAACGAGTG
ATTGTTCGCTTCATTTCGGTGGTATACTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig213:14367..18546-

>mRNA_L-elsbetiae_contig213.6509.1 ID=mRNA_L-elsbetiae_contig213.6509.1|Name=mRNA_L-elsbetiae_contig213.6509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig213:14367..18546- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGTTCAACAAGAAGTGTAGCCACCCAGGGTGCACCAAGCA
GCCGTCGTTCAGCGTGGAAGGGATGAAGAAGGCTGAGCTCTGCGCCCAGC
ACGCCAGGGAGGGGATGGTGGACGTCGTCAGCAAGAGATGTGGCCACCCG
GGGTGCAACACGCAGCCGTCGTACGGCGTGGAAGGGACGAAGAAGGCTGA
GCTCTGCGCCCAGCACGCCAGGGAGGGGATGGTGGACGTGAGGAGCAAGA
AGTGTGGCCACCCAGGGTGCAACACACACCCGTCGTACGGCTTGGAAGGA
ACGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAAGGAGGGGATGGTTCA
CGTGTATAACAAGAGGTGTGGCCACCCAGGGTGCACCAAGCAGCCGTCGT
ACGGCGTGGATGGGACGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAGG
GAGGGGATGGTGAACGTGTTCAACAAGAAGTGTAGCCACCCAGGGTGCGA
CACGAAGCCGTCAACTTGTTTTGCCAATGGAAAAAAGAGAGAATTCTGCT
CCCAACACGTCAAGCAGGGCATGGTGGATATGACCCGCCATAGATCTGGT
CGGGGTAGCGGTAGCGGTGGGCGTGACGAACTTGATGTGGGTGTCTCCGT
TCGCCAGCCCACGACGAAGAAGCGATCCCGGCAGGCCGGCGCCGTTCCTC
CGGTGGCGATCGCCGTCAAATCAGAGGAAGAACAGGACGACTTCACAGGA
CCTTCCTCCGGCACAACCGCAGGACCTGGTAAGCGAGCTCGCTTGGTTAG
TTTCACCCCCTCGGTCCCTGCGGCAGTCAAGCCAGAGGCCACGCGGAAAA
GGGCTGCTTTCCTCGCAAAGAACGCTTCCTCCTCGGACTCACGCGTGGAG
TCAGAGGTGGCTGCCGAAACAGGAGTTACTTTGTCGACCTAGATGGTGAA
CGTGTTCAACAAGAAGTGTAGCCACCCAGGGTGCACCAAGCAGCCGTCGT
TCAGCGTGGAAGGGATGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAGG
GAGGGGATGGTGGACGTCGTCAGCAAGAGATGTGGCCACCCGGGGTGCAA
CACGCAGCCGTCGTACGGCGTGGAAGGGACGAAGAAGGCTGAGCTCTGCG
CCCAGCACGCCAGGGAGGGGATGGTGGACGTGAGGAGCAAGAAGTGTGGC
CACCCAGGGTGCAACACACACCCGTCGTACGGCTTGGAAGGAACGAAGAA
GGCTGAGCTCTGCGCCCAGCACGCCAAGGAGGGGATGGTTCACGTGTATA
ACAAGAGGTGTGGCCACCCAGGGTGCACCAAGCAGCCGTCGTACGGCGTG
GATGGGACGAAGAAGGCTGAGCTCTGCGCCCAGCACGCCAGGGAGGGGAT
GGTGAACGTGTTCAACAAGAAGTGTAGCCACCCAGGGTGCGACACGAAGC
CGTCAACTTGTTTTGCCAATGGAAAAAAGAGAGAATTCTGCTCCCAACAC
GTCAAGCAGGGCATGGTGGATATGACCCGCCATAGATCTGGTCGGGGTAG
CGGTAGCGGTGGGCGTGACGAACTTGATGTGGGTGTCTCCGTTCGCCAGC
CCACGACGAAGAAGCGATCCCGGCAGGCCGGCGCCGTTCCTCCGGTGGCG
ATCGCCGTCAAATCAGAGGAAGAACAGGACGACTTCACAGGACCTTCCTC
CGGCACAACCGCAGGACCTGGTAAGCGAGCTCGCTTGGTTAGTTTCACCC
CCTCGGTCCCTGCGGCAGTCAAGCCAGAGGCCACGCGGAAAAGGGCTGCT
TTCCTCGCAAAGAACGCTTCCTCCTCGGACTCACGCGTGGAGTCAGAGGT
GGCTGCCGAAACAGGAGTTACTTTGTCGACCTAG
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