mRNA_L-elsbetiae_contig21298.6505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21298.6505.1
Unique NamemRNA_L-elsbetiae_contig21298.6505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5JSZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.050e-28
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = -1 
Query:  417 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQV 602
            RYTNAGDTVLGIGVETT+AP DAI+RGRRVEFYV DESKRAALQT I SAFHKAHSSGMFQV
Sbjct:   42 RYTNAGDTVLGIGVETTTAPVDAISRGRRVEFYVMDESKRAALQTNIASAFHKAHSSGMFQV 103
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.350e-25
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            RYTNAGDTVLGIGVETT+AP DAI+RGRRVEFYV DESKRAALQT I SAFHKAHSSGMFQ  R
Sbjct:  208 RYTNAGDTVLGIGVETTTAPVDAISRGRRVEFYVMDESKRAALQTNIASAFHKAHSSGMFQSRR 271
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.830e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            R+TNAGDTVLG+GVE+T+  EDAI+RGRRVEFYVTDESKRA+LQ KI S FHKAHSSGMFQ  R
Sbjct:  117 RFTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRR 180
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5JYC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.330e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            R+TNAGDTVLG+GVE+T+  EDAI+RGRRVEFYVTDESKRA+LQ KI S FHKAHSSGMFQ  R
Sbjct:  277 RFTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRR 340
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.110e-23
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            R+TNAGDTVLG+GVE+T+  EDAI+RGRRVEFYVTDESKRA+LQ KI S+FHKAHSSGMFQ  R
Sbjct:  259 RFTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSSFHKAHSSGMFQSRR 322
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.970e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            R+TNAGDTVLG+GVE+T+  EDAI+RGRRVEFYVTDESKRA+LQ KI S FHKAHSSGMFQ  R
Sbjct:  869 RFTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRR 932
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BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.660e-22
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1 
Query:  411 RYTNAGDTVLGIGVETTSAPEDAITRGRRVEFYVTDESKRAALQTKIGSAFHKAHSSGMFQVGR 602
            R+TNAGDTVLG+GVE+T+  EDAI+RGRRVEFYVTD SKRA+LQ KI S+FHKAHSSGMFQ  R
Sbjct:  277 RFTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDVSKRASLQAKISSSFHKAHSSGMFQSRR 340
[Close]
BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Match: A0A6H5K9C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.610e-5
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = -2 
Query:    2 QSRRGGGGQQLVLVGPKCLPTGLPTSTAPGRVLESLKQELKKETNQLAAAFAVAQALAKATHIVLQ 199
            QSRRGG   + V+VGP CLP GLP ST             +KE + L A++ VAQ +AK TH+ LQ
Sbjct:    3 QSRRGG---KEVVVGPNCLPAGLPPSTVXXXXXXXXXXXXEKEPDVLTASYTVAQTIAKTTHLTLQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21298.6505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JSZ7_9PHAE1.050e-2890.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYZ0_ECTSI5.350e-2587.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE40_9PHAE2.830e-2379.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC2_9PHAE4.330e-2379.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEI5_9PHAE5.110e-2379.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB1_9PHAE8.970e-2379.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K708_9PHAE4.660e-2278.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9C3_9PHAE3.610e-546.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21298contigL-elsbetiae_contig21298:1234..1835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size602
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21298.6505.1prot_L-elsbetiae_contig21298.6505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21298 1245..1595 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.1112647-UTR-L-elsbetiae_contig21298:1233..12441622815872.1112647-UTR-L-elsbetiae_contig21298:1233..1244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21298 1234..1244 +
1691683159.1583629-UTR-L-elsbetiae_contig21298:1233..12441691683159.1583629-UTR-L-elsbetiae_contig21298:1233..1244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21298 1234..1244 +
1622815872.136576-UTR-L-elsbetiae_contig21298:1595..18351622815872.136576-UTR-L-elsbetiae_contig21298:1595..1835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21298 1596..1835 +
1691683159.1869195-UTR-L-elsbetiae_contig21298:1595..18351691683159.1869195-UTR-L-elsbetiae_contig21298:1595..1835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21298 1596..1835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.1212797-CDS-L-elsbetiae_contig21298:1244..15951622815872.1212797-CDS-L-elsbetiae_contig21298:1244..1595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21298 1245..1595 +
1691683159.1725636-CDS-L-elsbetiae_contig21298:1244..15951691683159.1725636-CDS-L-elsbetiae_contig21298:1244..1595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21298 1245..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21298.6505.1

>prot_L-elsbetiae_contig21298.6505.1 ID=prot_L-elsbetiae_contig21298.6505.1|Name=mRNA_L-elsbetiae_contig21298.6505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MWVALASACATANAAASWFVSFLSSCLRDSSTRPGAVDVGRPVGKHFGPT
RTSCCPPPPRRLWTANVEGKTITTSHPEWAEENMEIHKCTHQRRDMKRRL
TQREKRTTNTHTNDAT*
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mRNA from alignment at L-elsbetiae_contig21298:1234..1835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21298.6505.1 ID=mRNA_L-elsbetiae_contig21298.6505.1|Name=mRNA_L-elsbetiae_contig21298.6505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=602bp|location=Sequence derived from alignment at L-elsbetiae_contig21298:1234..1835+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCAGGACGATGTGGGTGGCCTTGGCCAGCGCCTGCGCCACAGCGAAC
GCGGCCGCAAGCTGGTTTGTTTCCTTCTTGAGTTCTTGTTTGAGGGACTC
GAGCACCCGACCGGGTGCAGTGGATGTTGGGAGGCCAGTGGGTAAGCATT
TCGGACCAACCAGGACGAGCTGTTGCCCTCCACCTCCACGTCGGCTCTGG
ACGGCAAACGTTGAGGGAAAAACAATCACGACGAGTCATCCCGAATGGGC
TGAGGAAAACATGGAAATTCACAAATGCACGCACCAACGACGCGACATGA
AACGACGTCTGACACAAAGGGAAAAAAGAACCACCAATACACACACCAAC
GACGCGACATGAAACGACGTCTGACACAAAGGAAAATCCACAGGCTAAGA
AGAACAGGTGGCGGCCCACCTGAAACATGCCCGAGCTGTGCGCCTTGTGA
AACGCAGAGCCGATCTTTGTCTGCAAAGCAGCACGCTTCGACTCATCCGT
CACGTAAAACTCGACTCGGCGCCCTCGCGTTATGGCATCCTCTGGAGCCG
AAGTGGTCTCGACTCCAATTCCTAGCACTGTGTCGCCGGCGTTTGTGTAT
CT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21298:1234..1835+

>mRNA_L-elsbetiae_contig21298.6505.1 ID=mRNA_L-elsbetiae_contig21298.6505.1|Name=mRNA_L-elsbetiae_contig21298.6505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig21298:1234..1835+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGTGGCCTTGGCCAGCGCCTGCGCCACAGCGAACGCGGCCGCAAG
CTGGTTTGTTTCCTTCTTGAGTTCTTGTTTGAGGGACTCGAGCACCCGAC
CGGGTGCAGTGGATGTTGGGAGGCCAGTGGGTAAGCATTTCGGACCAACC
AGGACGAGCTGTTGCCCTCCACCTCCACGTCGGCTCTGGACGGCAAACGT
TGAGGGAAAAACAATCACGACGAGTCATCCCGAATGGGCTGAGGAAAACA
TGGAAATTCACAAATGCACGCACCAACGACGCGACATGAAACGACGTCTG
ACACAAAGGGAAAAAAGAACCACCAATACACACACCAACGACGCGACATG
AATGTGGGTGGCCTTGGCCAGCGCCTGCGCCACAGCGAACGCGGCCGCAA
GCTGGTTTGTTTCCTTCTTGAGTTCTTGTTTGAGGGACTCGAGCACCCGA
CCGGGTGCAGTGGATGTTGGGAGGCCAGTGGGTAAGCATTTCGGACCAAC
CAGGACGAGCTGTTGCCCTCCACCTCCACGTCGGCTCTGGACGGCAAACG
TTGAGGGAAAAACAATCACGACGAGTCATCCCGAATGGGCTGAGGAAAAC
ATGGAAATTCACAAATGCACGCACCAACGACGCGACATGAAACGACGTCT
GACACAAAGGGAAAAAAGAACCACCAATACACACACCAACGACGCGACAT
GA
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