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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_002250.1 |
| Exons | 2 |
| Model size | 519 |
| Cds size | 510 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815872.0076783-CDS-L-elsbetiae_contig2129:18287..18365 | 1622815872.0076783-CDS-L-elsbetiae_contig2129:18287..18365 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2129 18288..18365 - |
| 1691683159.1014056-CDS-L-elsbetiae_contig2129:18287..18365 | 1691683159.1014056-CDS-L-elsbetiae_contig2129:18287..18365 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2129 18288..18365 - |
| 1622815872.0244358-CDS-L-elsbetiae_contig2129:21102..21534 | 1622815872.0244358-CDS-L-elsbetiae_contig2129:21102..21534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2129 21103..21534 - |
| 1691683159.112691-CDS-L-elsbetiae_contig2129:21102..21534 | 1691683159.112691-CDS-L-elsbetiae_contig2129:21102..21534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2129 21103..21534 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815872.034295-UTR-L-elsbetiae_contig2129:21534..21541 | 1622815872.034295-UTR-L-elsbetiae_contig2129:21534..21541 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2129 21535..21541 - |
| 1691683159.1240811-UTR-L-elsbetiae_contig2129:21534..21541 | 1691683159.1240811-UTR-L-elsbetiae_contig2129:21534..21541 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2129 21535..21541 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2129.6503.1 >prot_L-elsbetiae_contig2129.6503.1 ID=prot_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MEVDRSGGGDSSDSSDGGVEEEEEEEEEDDDDDDEDEDGEDDEEDEEDDL
DPAVEKIVDRHVDGGFLDPRKWRQTVPFDRPGDGYWREDHAGPRVRQFRD
ATPADLRVAKPRPPPAYILRNPFSSKATKQKYDAQMDMYYACRKVAVSSD
GEVFRATNRSIEAALRRTPG back to topmRNA from alignment at L-elsbetiae_contig2129:18288..21541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig2129.6503.1 ID=mRNA_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3254bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:18288..21541- (Laminarionema elsbetiae ELsaHSoW15)
CGTCGTAATGGAGGTCGATCGGAGCGGCGGGGGAGACTCCAGCGACTCCT
CTGACGGGGGCGTCGAAGAGGAGGAGGAAGAGGAAGAAGAGGACGACGAC
GACGACGACGAGGACGAGGACGGTGAAGACGACGAAGAGGACGAAGAGGA
CGACCTGGACCCAGCGGTCGAGAAAATCGTCGACCGACACGTGGACGGCG
GGTTCCTCGACCCCCGCAAGTGGCGGCAGACGGTCCCCTTCGACCGGCCG
GGCGACGGCTACTGGCGGGAGGACCATGCCGGCCCCCGCGTGCGGCAGTT
CCGCGACGCGACGCCCGCCGACCTGAGAGTCGCCAAGCCGCGGCCCCCGC
CCGCCTACATCTTGCGGAACCCCTTCAGCTCGAAAGCGACCAAGCAGAAG
TACGACGCTCAGATGGACATGTACTACGCCTGCAGGAAGGTTAGAGGTTT
CGGGCAGACTAGACTGCTGTAATTAATCGCCTCGTTTAATTTCCCCCCGC
CCCGGGGAAGGGGATCTGCTTTTTTATTTGTGACAGAAACAATACCCATC
TCCGGGGGGGGGGGCTCAGAGAAAGCATGCTTCCAGGCCGAAAAAGTGCT
GGGGGGGGGGTAGACACGATTACGTTATCTGTCTCTCCCCCCTCTCTCAT
CTGTTTTTTTTGGCAGTGTTATTTGGAATCGTTTTCAAGGAGGCGCAGAA
ATGAGCTCTTTCTTGACAAGTGCTCGCAGCTGAATACAGATTTTGCAACG
CAGCAAGCTCAGACTTGTAGCTCTGATACCTGTCGAGTGTTGAGCAAGAA
CCAAGCGAATCGATGCTCTCGTGGTGGAGTACGAACAATTTAGGGCGTCA
ACAAACTGCTGGAGTGGCCCTGCAGACGAGAAAACGCAAAAAAAGACCCC
CTACCAAAAGCCCCGCCCTATCGAGGCACACGCTCGCACCGGCGCGCCAG
CCCTTGTAGCTCACAGTCACCACCCCAGACGAAACAAACCAAAGGGGAGG
ATATTCACTACTTATGACTATTGTAGCGTCGTTGCGGGTTTCAGACCATG
AATCGCTCTGTGAGCGTCAAATCAGAGCTTCCTTCGAACACGCACTGAGG
GGCTCGGCGAGGCCAGCGCCAGTAGACAGCAGCAGCTGTAGTTAGTGCCC
TACAAAACGACTGTCAGTATTGGCAAGTGTTCTACACACCTGGGACCGTA
TACTTTCCGATGTGTACAGTTGCCTCGTGGATGGATGCTATCTGGCTCTG
CCGCCAAACTACCCCAAAATCGTGCTGTGGATCAGCGGACTGGCTCTCTC
TCTCTTGTCCGAGCTCTTCCAGTCCAGTATGAATGTCAAGCGATGCTGAG
AGTTAGTGCCCTGCAATAATTGACGCCTAATATTTTGTCCTAGTATGCAG
CCAAGGACCTTATCCACATGTTCTATGACTCCTGGCTTGGATGACTTCCT
CGAAGCTGAGCTTTCGACCTCTCCGTATCTGCCTACACTGAAGATGTGTG
TTTTTGTACGTCCCAGGAAATCCCTCCCAAAAAAACCAATCCCGTATGCG
CCCCCTTAAAAGCCTAATTCCAATAACACTGTTGGGAGGGGGGGATGCCG
GCAGCCTGTCGAAAAGAGAAGCTGTCGCGCAGCACTTTTGTGACATCTTT
ATCTTGGGGCATGGAGCGAGAAGGGCATGATGAGTGTACACACGTCACGC
CCTTGCTCTCGCGCGCGAACAGCTGCCGGTTGTCGTCAGTAGTCTCTCTC
TCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGTGTCGTTC
CCATTTGTTTTGGCGACAGTCCCCCCGAGTGGAGACGTATACTACACCTT
GCGGTGTACTTAGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACT
AGAACCAACCGGGGCCACACAGGAGGGGGTGAACACCAGGGTCGTAAACT
CGCCGCAGGCGGTGTGCGGCTCCCCGCCAGGGCCTCCCGGGAGGGCCGCC
AGAGGCCCGCTCCCCGCACAGGGGCCCGCCGGAGGCATTTGTTTTAGCTT
ATTGTTGCCTTTATAGTCGGCAAATCACTTCAAAATCAAGTGTTTTTGGT
GAACCAAAGCGTTTTTGATGCTGCTTTGGATGCAGTACACCCTCCTCGTC
GTTTGAAACCCACTTTTACGTAAAAAAAAAAGTAAGAGTCGAATCTTTGT
TTCGCCTCGCGGCGTCATGAAAAGGGCCCAAATATTTTTCGCCCTGCAAA
AAGGGATGTGCGGCAAGCTTTGCCGCACGTCGCCTCCGGCAAATTGTACG
CTGCGCGCACTTTCTCAATGTTTTGGTGCGCCAGCGCACCAGCGGCTCAC
CTATTTACGACCCTGGTGTGTACACTGGGGCTTTTTTCTTCTTTTTCTTT
TTCTTTTTTTGCCCCACCTTCTTTCCTTGCTCCAGCGGTGCTGTGCTTGC
CTTCATATTTATCGCGAGAAGGGTTCGGCTGTCTCTTTCCCTCGTCAACG
TGATTACGTCTTGGGAAGTTTGATACTCGCGAGCTTTTCAGCTTTTATCG
CTTTCACCTTCAAAGTCTCAAAAGAAAACACTTCTGCTTGGGATTGAACT
CCAGACTGTGCTGCTAGCGGGCTCGAAGCTGAACCACTAGACCACCGGGG
CGACCGGTGTGTAGTTTACGCAGGGATTTCGTGTTCACCTAACATACGGG
ATAAAGCATGGGAACCGGGAAAAAAGGGGGGTCAGTGGTTAGGGTTAGGG
TTATTTTCCTAGAGAAACTTAATTTCCGGCGGAAGGCAGGCAGTCCCTGG
TTGTTGCCCTGTGAAAAGCCACTGCCCCCCCCCCCCCTCGTCCCGCACTG
AACGCGAACGAACCGCGCTACTGACTGTAGCTGTTGTATCATTTTTTCTC
TGCCTCTTTGCGCGCTCCCGTGTTGGTTGGTGTGTTGCGCGGTACATATG
TTCCTACACATATGTTTTATAGATTGCTCTGCGTGGCATCGCGCTTTCCA
ACTTTCCTTTTCTACCGCGGCGTCGAGTGTGCCTTGTTTTGTGGCCACAG
ACGGGCCGGGCCCCCAAGGATGGGCTAATGTGAGAAACAAAATATTATAT
AATGGGAGAAACAACAACATGATGTGATATCCTATGTACAACAACAACAG
TGATATCCTACAATAAAACCCCGAAGGTGGCCGTGTCATCCGATGGCGAG
GTCTTCCGAGCGACCAACAGGAGCATCGAGGCGGCGCTGAGACGGACTCC
CGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig2129:18288..21541- >mRNA_L-elsbetiae_contig2129.6503.1 ID=mRNA_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:18288..21541- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTCGATCGGAGCGGCGGGGGAGACTCCAGCGACTCCTCTGACGG
GGGCGTCGAAGAGGAGGAGGAAGAGGAAGAAGAGGACGACGACGACGACG
ACGAGGACGAGGACGGTGAAGACGACGAAGAGGACGAAGAGGACGACCTG
GACCCAGCGGTCGAGAAAATCGTCGACCGACACGTGGACGGCGGGTTCCT
CGACCCCCGCAAGTGGCGGCAGACGGTCCCCTTCGACCGGCCGGGCGACG
GCTACTGGCGGGAGGACCATGCCGGCCCCCGCGTGCGGCAGTTCCGCGAC
GCGACGCCCGCCGACCTGAGAGTCGCCAAGCCGCGGCCCCCGCCCGCCTA
CATCTTGCGGAACCCCTTCAGCTCGAAAGCGACCAAGCAGAAGTACGACG
CTCAGATGGACATGTACTACGCCTGCAGGAAGATGGAGGTCGATCGGAGC
GGCGGGGGAGACTCCAGCGACTCCTCTGACGGGGGCGTCGAAGAGGAGGA
GGAAGAGGAAGAAGAGGACGACGACGACGACGACGAGGACGAGGACGGTG
AAGACGACGAAGAGGACGAAGAGGACGACCTGGACCCAGCGGTCGAGAAA
ATCGTCGACCGACACGTGGACGGCGGGTTCCTCGACCCCCGCAAGTGGCG
GCAGACGGTCCCCTTCGACCGGCCGGGCGACGGCTACTGGCGGGAGGACC
ATGCCGGCCCCCGCGTGCGGCAGTTCCGCGACGCGACGCCCGCCGACCTG
AGAGTCGCCAAGCCGCGGCCCCCGCCCGCCTACATCTTGCGGAACCCCTT
CAGCTCGAAAGCGACCAAGCAGAAGTACGACGCTCAGATGGACATGTACT
ACGCCTGCAGGAAGGTGGCCGTGTCATCCGATGGCGAGGTCTTCCGAGCG
ACCAACAGGAGCATCGAGGCGGCGCTGAGACGGACTCCCGGGGTGGCCGT
GTCATCCGATGGCGAGGTCTTCCGAGCGACCAACAGGAGCATCGAGGCGG
CGCTGAGACGGACTCCCGGG back to top
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