mRNA_L-elsbetiae_contig2129.6502.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2129.6502.1
Unique NamemRNA_L-elsbetiae_contig2129.6502.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2129.6502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2129contigL-elsbetiae_contig2129:14514..14929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size416
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.8737464-CDS-L-elsbetiae_contig2129:14513..148281622815871.8737464-CDS-L-elsbetiae_contig2129:14513..14828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 14514..14828 +
1691683159.014622-CDS-L-elsbetiae_contig2129:14513..148281691683159.014622-CDS-L-elsbetiae_contig2129:14513..14828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 14514..14828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.8862584-UTR-L-elsbetiae_contig2129:14828..149291622815871.8862584-UTR-L-elsbetiae_contig2129:14828..14929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 14829..14929 +
1691683159.0253937-UTR-L-elsbetiae_contig2129:14828..149291691683159.0253937-UTR-L-elsbetiae_contig2129:14828..14929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 14829..14929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2129.6502.1prot_L-elsbetiae_contig2129.6502.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2129 14514..14828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2129.6502.1

>prot_L-elsbetiae_contig2129.6502.1 ID=prot_L-elsbetiae_contig2129.6502.1|Name=mRNA_L-elsbetiae_contig2129.6502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
IGPGGVISRAVYGTVRVELVQLEVQEAEGCATAAWASHTCVYNHRERVGD
AGGGAESLRAWQGVVGWLTLGLRRVPPSVWYSSRRHVAMGGMHRRGKRER
ERER*
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mRNA from alignment at L-elsbetiae_contig2129:14514..14929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2129.6502.1 ID=mRNA_L-elsbetiae_contig2129.6502.1|Name=mRNA_L-elsbetiae_contig2129.6502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=416bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:14514..14929+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGTCCGGGGGGGGTGATATCTCGTGCCGTTTACGGTACGGTACGAGT
TGAGCTAGTTCAGTTGGAGGTGCAAGAAGCGGAGGGGTGCGCCACCGCCG
CGTGGGCTTCACACACGTGCGTGTATAATCATCGGGAGCGGGTTGGTGAC
GCGGGTGGTGGCGCGGAGAGCTTGCGGGCTTGGCAAGGTGTGGTGGGCTG
GCTCACACTTGGACTCCGGCGTGTGCCCCCCTCCGTCTGGTACAGCTCTC
GCCGCCATGTTGCCATGGGCGGAATGCATCGCAGGGGAAAGCGAGAGAGA
GAAAGAGAGAGATAACTAAATATGCTGTTTTTTGTCGCAGGCGGAAGAAG
GTAGAAGGATATCGCTGCCGCTGACAAATACGGCCACAGGGCCAACAACA
AAAAAATATCGCTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2129:14514..14929+

>mRNA_L-elsbetiae_contig2129.6502.1 ID=mRNA_L-elsbetiae_contig2129.6502.1|Name=mRNA_L-elsbetiae_contig2129.6502.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:14514..14929+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGTCCGGGGGGGGTGATATCTCGTGCCGTTTACGGTACGGTACGAGT
TGAGCTAGTTCAGTTGGAGGTGCAAGAAGCGGAGGGGTGCGCCACCGCCG
CGTGGGCTTCACACACGTGCGTGTATAATCATCGGGAGCGGGTTGGTGAC
GCGGGTGGTGGCGCGGAGAGCTTGCGGGCTTGGCAAGGTGTGGTGGGCTG
GCTCACACTTGGACTCCGGCGTGTGCCCCCCTCCGTCTGGTACAGCTCTC
GCCGCCATGTTGCCATGGGCGGAATGCATCGCAGGGGAAAGCGAGAGAGA
GAAAGAGAGAGATAAATCGGTCCGGGGGGGGTGATATCTCGTGCCGTTTA
CGGTACGGTACGAGTTGAGCTAGTTCAGTTGGAGGTGCAAGAAGCGGAGG
GGTGCGCCACCGCCGCGTGGGCTTCACACACGTGCGTGTATAATCATCGG
GAGCGGGTTGGTGACGCGGGTGGTGGCGCGGAGAGCTTGCGGGCTTGGCA
AGGTGTGGTGGGCTGGCTCACACTTGGACTCCGGCGTGTGCCCCCCTCCG
TCTGGTACAGCTCTCGCCGCCATGTTGCCATGGGCGGAATGCATCGCAGG
GGAAAGCGAGAGAGAGAAAGAGAGAGATAA
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