mRNA_L-elsbetiae_contig2129.6500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2129.6500.1
Unique NamemRNA_L-elsbetiae_contig2129.6500.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2129.6500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2129contigL-elsbetiae_contig2129:1591..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size506
Cds size438
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.82503-UTR-L-elsbetiae_contig2129:1590..16581622815871.82503-UTR-L-elsbetiae_contig2129:1590..1658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 1591..1658 +
1691683158.9925208-UTR-L-elsbetiae_contig2129:1590..16581691683158.9925208-UTR-L-elsbetiae_contig2129:1590..1658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 1591..1658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.8383007-CDS-L-elsbetiae_contig2129:1658..20961622815871.8383007-CDS-L-elsbetiae_contig2129:1658..2096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 1659..2096 +
1691683159.0036614-CDS-L-elsbetiae_contig2129:1658..20961691683159.0036614-CDS-L-elsbetiae_contig2129:1658..2096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 1659..2096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2129.6500.1prot_L-elsbetiae_contig2129.6500.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2129 1659..2096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2129.6500.1

>prot_L-elsbetiae_contig2129.6500.1 ID=prot_L-elsbetiae_contig2129.6500.1|Name=mRNA_L-elsbetiae_contig2129.6500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MPICIRTHEFAVHRCCISVTAALFLYGAPFPALFLISGWVGGVGCHGNAF
IDVVKPLLAFFRALEPNRTPACLFIFIRWDFGFLLLKGRGAAAEGERTIG
SIVGFYRYRQRGSSLVLAHSICQAWWLVPRLWLREEGKGLCCLLC*
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mRNA from alignment at L-elsbetiae_contig2129:1591..2096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2129.6500.1 ID=mRNA_L-elsbetiae_contig2129.6500.1|Name=mRNA_L-elsbetiae_contig2129.6500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=506bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:1591..2096+ (Laminarionema elsbetiae ELsaHSoW15)
GATACAGATTTTCTTGCTCCGTCAATCCTGTGTCCTTCGTGTGTAAAAAT
TAGATAGAACCGTACAACATGCCCATATGTATACGTACGCATGAATTTGC
CGTTCACCGGTGTTGTATATCTGTTACTGCAGCTTTGTTTTTATACGGCG
CCCCTTTCCCGGCCTTATTTCTTATTTCCGGATGGGTGGGTGGGGTGGGG
TGCCACGGCAACGCATTTATTGACGTTGTGAAACCCCTCCTCGCTTTTTT
TCGCGCACTCGAACCGAACCGAACGCCTGCCTGCCTCTTTATTTTTATTC
GGTGGGATTTTGGCTTTTTATTGCTCAAGGGTCGGGGTGCGGCCGCCGAG
GGGGAACGAACGATTGGTTCGATTGTTGGGTTTTACCGATATCGGCAAAG
AGGTAGTTCTCTTGTCTTAGCCCACAGTATTTGTCAGGCCTGGTGGTTGG
TCCCACGGCTTTGGCTGAGGGAGGAGGGGAAGGGGCTCTGTTGCTTATTG
TGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2129:1591..2096+

>mRNA_L-elsbetiae_contig2129.6500.1 ID=mRNA_L-elsbetiae_contig2129.6500.1|Name=mRNA_L-elsbetiae_contig2129.6500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:1591..2096+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCATATGTATACGTACGCATGAATTTGCCGTTCACCGGTGTTGTAT
ATCTGTTACTGCAGCTTTGTTTTTATACGGCGCCCCTTTCCCGGCCTTAT
TTCTTATTTCCGGATGGGTGGGTGGGGTGGGGTGCCACGGCAACGCATTT
ATTGACGTTGTGAAACCCCTCCTCGCTTTTTTTCGCGCACTCGAACCGAA
CCGAACGCCTGCCTGCCTCTTTATTTTTATTCGGTGGGATTTTGGCTTTT
TATTGCTCAAGGGTCGGGGTGCGGCCGCCGAGGGGGAACGAACGATTGGT
TCGATTGTTGGGTTTTACCGATATCGGCAAAGAGGTAGTTCTCTTGTCTT
AGCCCACAGTATTTGTCAGGCCTGGTGGTTGGTCCCACGGCTTTGGCTGA
GGGAGGAGGGGAAGGGGCTCTGTTGCTTATTGTGTTGAATGCCCATATGT
ATACGTACGCATGAATTTGCCGTTCACCGGTGTTGTATATCTGTTACTGC
AGCTTTGTTTTTATACGGCGCCCCTTTCCCGGCCTTATTTCTTATTTCCG
GATGGGTGGGTGGGGTGGGGTGCCACGGCAACGCATTTATTGACGTTGTG
AAACCCCTCCTCGCTTTTTTTCGCGCACTCGAACCGAACCGAACGCCTGC
CTGCCTCTTTATTTTTATTCGGTGGGATTTTGGCTTTTTATTGCTCAAGG
GTCGGGGTGCGGCCGCCGAGGGGGAACGAACGATTGGTTCGATTGTTGGG
TTTTACCGATATCGGCAAAGAGGTAGTTCTCTTGTCTTAGCCCACAGTAT
TTGTCAGGCCTGGTGGTTGGTCCCACGGCTTTGGCTGAGGGAGGAGGGGA
AGGGGCTCTGTTGCTTATTGTGTTGA
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