mRNA_L-elsbetiae_contig21283.6499.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21283.6499.1
Unique NamemRNA_L-elsbetiae_contig21283.6499.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21283.6499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21283contigL-elsbetiae_contig21283:285..691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.767945-CDS-L-elsbetiae_contig21283:284..6171622815871.767945-CDS-L-elsbetiae_contig21283:284..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21283 285..617 +
1691683158.9701233-CDS-L-elsbetiae_contig21283:284..6171691683158.9701233-CDS-L-elsbetiae_contig21283:284..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21283 285..617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.7774854-UTR-L-elsbetiae_contig21283:617..6911622815871.7774854-UTR-L-elsbetiae_contig21283:617..691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21283 618..691 +
1691683158.9806461-UTR-L-elsbetiae_contig21283:617..6911691683158.9806461-UTR-L-elsbetiae_contig21283:617..691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21283 618..691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21283.6499.1prot_L-elsbetiae_contig21283.6499.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21283 285..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21283.6499.1

>prot_L-elsbetiae_contig21283.6499.1 ID=prot_L-elsbetiae_contig21283.6499.1|Name=mRNA_L-elsbetiae_contig21283.6499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
PPWLPILQSSRTRICCNRPVLSPLACSSSNTWSVEAASRVDKREKKTKKG
VAGKDNQSRKKHASPAAHTDGELKVPASSPNVRLESKITRKKTYDKCCAA
QLNGPWESYR*
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mRNA from alignment at L-elsbetiae_contig21283:285..691+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21283.6499.1 ID=mRNA_L-elsbetiae_contig21283.6499.1|Name=mRNA_L-elsbetiae_contig21283.6499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=407bp|location=Sequence derived from alignment at L-elsbetiae_contig21283:285..691+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGTGGCTTCCGATCCTCCAATCCTCCCGCACCCGGATTTGCTGCAA
CCGACCCGTACTCTCCCCCCTTGCTTGTAGCAGCTCCAACACGTGGTCGG
TTGAAGCGGCGTCCAGAGTCGATAAAAGGGAAAAAAAAACAAAAAAAGGA
GTAGCCGGGAAGGATAATCAATCCAGAAAGAAACACGCCTCCCCCGCTGC
CCATACAGACGGAGAACTGAAAGTGCCTGCGTCCTCACCAAACGTCAGGC
TCGAAAGCAAGATAACAAGAAAAAAAACTTACGACAAGTGCTGCGCAGCG
CAGCTGAACGGACCATGGGAATCGTACAGGTAGATTCACTCACCAGACGT
CCAACTCGTTGTGCCTTACCGTGCACGAATACAGAAACACGCTGCTGTAC
ATCAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21283:285..691+

>mRNA_L-elsbetiae_contig21283.6499.1 ID=mRNA_L-elsbetiae_contig21283.6499.1|Name=mRNA_L-elsbetiae_contig21283.6499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig21283:285..691+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGTGGCTTCCGATCCTCCAATCCTCCCGCACCCGGATTTGCTGCAA
CCGACCCGTACTCTCCCCCCTTGCTTGTAGCAGCTCCAACACGTGGTCGG
TTGAAGCGGCGTCCAGAGTCGATAAAAGGGAAAAAAAAACAAAAAAAGGA
GTAGCCGGGAAGGATAATCAATCCAGAAAGAAACACGCCTCCCCCGCTGC
CCATACAGACGGAGAACTGAAAGTGCCTGCGTCCTCACCAAACGTCAGGC
TCGAAAGCAAGATAACAAGAAAAAAAACTTACGACAAGTGCTGCGCAGCG
CAGCTGAACGGACCATGGGAATCGTACAGGTAGCCGCCGTGGCTTCCGAT
CCTCCAATCCTCCCGCACCCGGATTTGCTGCAACCGACCCGTACTCTCCC
CCCTTGCTTGTAGCAGCTCCAACACGTGGTCGGTTGAAGCGGCGTCCAGA
GTCGATAAAAGGGAAAAAAAAACAAAAAAAGGAGTAGCCGGGAAGGATAA
TCAATCCAGAAAGAAACACGCCTCCCCCGCTGCCCATACAGACGGAGAAC
TGAAAGTGCCTGCGTCCTCACCAAACGTCAGGCTCGAAAGCAAGATAACA
AGAAAAAAAACTTACGACAAGTGCTGCGCAGCGCAGCTGAACGGACCATG
GGAATCGTACAGGTAG
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