mRNA_L-elsbetiae_contig21270.6495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21270.6495.1
Unique NamemRNA_L-elsbetiae_contig21270.6495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21270.6495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21270contigL-elsbetiae_contig21270:1570..2290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21270.6495.1prot_L-elsbetiae_contig21270.6495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21270 1679..2144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.3766806-UTR-L-elsbetiae_contig21270:1569..16781622815871.3766806-UTR-L-elsbetiae_contig21270:1569..1678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21270 1570..1678 +
1691683158.6739814-UTR-L-elsbetiae_contig21270:1569..16781691683158.6739814-UTR-L-elsbetiae_contig21270:1569..1678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21270 1570..1678 +
1622815871.4085948-UTR-L-elsbetiae_contig21270:2144..22901622815871.4085948-UTR-L-elsbetiae_contig21270:2144..2290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21270 2145..2290 +
1691683158.7083697-UTR-L-elsbetiae_contig21270:2144..22901691683158.7083697-UTR-L-elsbetiae_contig21270:2144..2290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21270 2145..2290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815871.3862584-CDS-L-elsbetiae_contig21270:1678..20611622815871.3862584-CDS-L-elsbetiae_contig21270:1678..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21270 1679..2061 +
1691683158.6844609-CDS-L-elsbetiae_contig21270:1678..20611691683158.6844609-CDS-L-elsbetiae_contig21270:1678..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21270 1679..2061 +
1622815871.3963416-CDS-L-elsbetiae_contig21270:2074..21441622815871.3963416-CDS-L-elsbetiae_contig21270:2074..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21270 2075..2144 +
1691683158.6954985-CDS-L-elsbetiae_contig21270:2074..21441691683158.6954985-CDS-L-elsbetiae_contig21270:2074..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21270 2075..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21270.6495.1

>prot_L-elsbetiae_contig21270.6495.1 ID=prot_L-elsbetiae_contig21270.6495.1|Name=mRNA_L-elsbetiae_contig21270.6495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MYVFCLFDSRRCFRAYGARIEVYPVYFICVGGDERYTREWCQSVIEVQFH
WKAYIVGRFPKGNYMYVDVSVFLFWVSSGGQAGFCPLPDGALTGLYTGFC
GRGGSCEPCVSTLPPPPQRARGVSVIINNEQSGIFQRRRRWNMGFVSAED
*
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mRNA from alignment at L-elsbetiae_contig21270:1570..2290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21270.6495.1 ID=mRNA_L-elsbetiae_contig21270.6495.1|Name=mRNA_L-elsbetiae_contig21270.6495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=721bp|location=Sequence derived from alignment at L-elsbetiae_contig21270:1570..2290+ (Laminarionema elsbetiae ELsaHSoW15)
CGAAATAAGGTGCGTTTCGTCAGTTAGAGTGTTGCTGCAAGCACGAGTTG
TACATAATACACATACTATACATGGAGGAGATAAATACATATTATGAAGG
GAAATTTATATGTATGTATTTTGCCTTTTCGATTCGAGGCGGTGCTTCCG
AGCGTATGGAGCCCGGATCGAAGTGTATCCTGTATATTTTATTTGTGTCG
GAGGGGATGAGAGGTATACAAGGGAGTGGTGTCAGTCGGTTATCGAGGTT
CAGTTTCACTGGAAGGCATATATTGTAGGAAGGTTCCCGAAGGGGAATTA
CATGTATGTAGATGTTTCCGTTTTCCTATTCTGGGTTTCAAGTGGGGGGC
AGGCAGGTTTTTGCCCTCTGCCTGATGGTGCGTTGACTGGTTTGTATACT
GGGTTTTGTGGACGGGGTGGTTCGTGTGAACCGTGTGTGTCCACTCTCCC
CCCCCCCCCCCAGCGAGCAAGGGGGGTAAGCGTTATAATCAAGCAAATTC
GAAAGCAACGAACAAAGCGGAATATTCCAGAGACGTAGGCGGTGGAATAT
GGGTTTTGTGAGCGCGGAAGACTAGATACCCCGTTGGCCAATGAGATCGA
GCAGAAAGCAGGGCAGGTGTAGAGCCAAGATTTCACTCGCTTGAAGGCGT
TCAAGACCTAGCGGAAAGCGAGAGCTCGGGCGGAAGCTGAGGGGTATCTT
CGTATCAGACTTATCCTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21270:1570..2290+

>mRNA_L-elsbetiae_contig21270.6495.1 ID=mRNA_L-elsbetiae_contig21270.6495.1|Name=mRNA_L-elsbetiae_contig21270.6495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig21270:1570..2290+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATTTTGCCTTTTCGATTCGAGGCGGTGCTTCCGAGCGTATGG
AGCCCGGATCGAAGTGTATCCTGTATATTTTATTTGTGTCGGAGGGGATG
AGAGGTATACAAGGGAGTGGTGTCAGTCGGTTATCGAGGTTCAGTTTCAC
TGGAAGGCATATATTGTAGGAAGGTTCCCGAAGGGGAATTACATGTATGT
AGATGTTTCCGTTTTCCTATTCTGGGTTTCAAGTGGGGGGCAGGCAGGTT
TTTGCCCTCTGCCTGATGGTGCGTTGACTGGTTTGTATACTGGGTTTTGT
GGACGGGGTGGTTCGTGTGAACCGTGTGTGTCCACTCTCCCCCCCCCCCC
CCAGCGAGCAAGGGGGGTAAGCGTTATAATCAAATGTATGTATTTTGCCT
TTTCGATTCGAGGCGGTGCTTCCGAGCGTATGGAGCCCGGATCGAAGTGT
ATCCTGTATATTTTATTTGTGTCGGAGGGGATGAGAGGTATACAAGGGAG
TGGTGTCAGTCGGTTATCGAGGTTCAGTTTCACTGGAAGGCATATATTGT
AGGAAGGTTCCCGAAGGGGAATTACATGTATGTAGATGTTTCCGTTTTCC
TATTCTGGGTTTCAAGTGGGGGGCAGGCAGGTTTTTGCCCTCTGCCTGAT
GGTGCGTTGACTGGTTTGTATACTGGGTTTTGTGGACGGGGTGGTTCGTG
TGAACCGTGTGTGTCCACTCTCCCCCCCCCCCCCCAGCGAGCAAGGGGGG
TAAGCGTTATAATCAACAACGAACAAAGCGGAATATTCCAGAGACGTAGG
CGGTGGAATATGGGTTTTGTGAGCGCGGAAGACTAGCAACGAACAAAGCG
GAATATTCCAGAGACGTAGGCGGTGGAATATGGGTTTTGTGAGCGCGGAA
GACTAG
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