mRNA_L-elsbetiae_contig21258.6487.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21258.6487.1
Unique NamemRNA_L-elsbetiae_contig21258.6487.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21258.6487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21258contigL-elsbetiae_contig21258:1760..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size348
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.5783467-CDS-L-elsbetiae_contig21258:1759..20831622815870.5783467-CDS-L-elsbetiae_contig21258:1759..2083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21258 1760..2083 +
1691683158.1472876-CDS-L-elsbetiae_contig21258:1759..20831691683158.1472876-CDS-L-elsbetiae_contig21258:1759..2083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21258 1760..2083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.5881782-UTR-L-elsbetiae_contig21258:2083..21061622815870.5881782-UTR-L-elsbetiae_contig21258:2083..2106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21258 2084..2106 +
1691683158.155148-UTR-L-elsbetiae_contig21258:2083..21061691683158.155148-UTR-L-elsbetiae_contig21258:2083..2106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21258 2084..2106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21258.6487.1prot_L-elsbetiae_contig21258.6487.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21258 1760..2083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21258.6487.1

>prot_L-elsbetiae_contig21258.6487.1 ID=prot_L-elsbetiae_contig21258.6487.1|Name=mRNA_L-elsbetiae_contig21258.6487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
LRCAACHAVRRSLAATRVAAPLRLHVDGIHHALLLVFSTELPPVVFHAVR
RQLVVAATTCTRVVGRVVAPLVENVHTCSTCVRTISPSCYLPRRTMTTDF
IRHGCYC*
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mRNA from alignment at L-elsbetiae_contig21258:1760..2106+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21258.6487.1 ID=mRNA_L-elsbetiae_contig21258.6487.1|Name=mRNA_L-elsbetiae_contig21258.6487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=347bp|location=Sequence derived from alignment at L-elsbetiae_contig21258:1760..2106+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGTTGTGCCGCCTGCCACGCCGTACGCCGGTCGCTTGCTGCAACTAG
GGTGGCCGCACCTCTTCGTCTTCACGTGGATGGCATCCACCACGCCCTCC
TTCTTGTGTTCAGCACAGAGCTTCCTCCTGTTGTATTCCATGCTGTTCGA
CGGCAGCTTGTCGTTGCAGCAACTACTTGTACACGGGTGGTCGGTCGGGT
GGTCGCACCTCTTGTCGAAAACGTTCACACCTGCTCTACTTGTGTACGCA
CAATTTCCCCGTCTTGCTACCTTCCCCGCCGAACAATGACTACTGATTTC
ATCCGCCATGGGTGTTACTGCTGATCCTCTCTGTCTCGGCTGCACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21258:1760..2106+

>mRNA_L-elsbetiae_contig21258.6487.1 ID=mRNA_L-elsbetiae_contig21258.6487.1|Name=mRNA_L-elsbetiae_contig21258.6487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig21258:1760..2106+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGTTGTGCCGCCTGCCACGCCGTACGCCGGTCGCTTGCTGCAACTAG
GGTGGCCGCACCTCTTCGTCTTCACGTGGATGGCATCCACCACGCCCTCC
TTCTTGTGTTCAGCACAGAGCTTCCTCCTGTTGTATTCCATGCTGTTCGA
CGGCAGCTTGTCGTTGCAGCAACTACTTGTACACGGGTGGTCGGTCGGGT
GGTCGCACCTCTTGTCGAAAACGTTCACACCTGCTCTACTTGTGTACGCA
CAATTTCCCCGTCTTGCTACCTTCCCCGCCGAACAATGACTACTGATTTC
ATCCGCCATGGGTGTTACTGCTGATTGCGTTGTGCCGCCTGCCACGCCGT
ACGCCGGTCGCTTGCTGCAACTAGGGTGGCCGCACCTCTTCGTCTTCACG
TGGATGGCATCCACCACGCCCTCCTTCTTGTGTTCAGCACAGAGCTTCCT
CCTGTTGTATTCCATGCTGTTCGACGGCAGCTTGTCGTTGCAGCAACTAC
TTGTACACGGGTGGTCGGTCGGGTGGTCGCACCTCTTGTCGAAAACGTTC
ACACCTGCTCTACTTGTGTACGCACAATTTCCCCGTCTTGCTACCTTCCC
CGCCGAACAATGACTACTGATTTCATCCGCCATGGGTGTTACTGCTGA
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