mRNA_L-elsbetiae_contig21253.6486.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21253.6486.1
Unique NamemRNA_L-elsbetiae_contig21253.6486.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21253.6486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21253contigL-elsbetiae_contig21253:44..1826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001070.1
Exons3
Model size590
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21253.6486.1prot_L-elsbetiae_contig21253.6486.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21253 172..1733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.500509-UTR-L-elsbetiae_contig21253:43..1711622815870.500509-UTR-L-elsbetiae_contig21253:43..171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21253 44..171 -
1691683158.1034017-UTR-L-elsbetiae_contig21253:43..1711691683158.1034017-UTR-L-elsbetiae_contig21253:43..171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21253 44..171 -
1622815870.5426462-UTR-L-elsbetiae_contig21253:1733..18261622815870.5426462-UTR-L-elsbetiae_contig21253:1733..1826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21253 1734..1826 -
1691683158.13968-UTR-L-elsbetiae_contig21253:1733..18261691683158.13968-UTR-L-elsbetiae_contig21253:1733..1826Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21253 1734..1826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.510886-CDS-L-elsbetiae_contig21253:171..3151622815870.510886-CDS-L-elsbetiae_contig21253:171..315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 172..315 -
1691683158.1119823-CDS-L-elsbetiae_contig21253:171..3151691683158.1119823-CDS-L-elsbetiae_contig21253:171..315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 172..315 -
1622815870.5204637-CDS-L-elsbetiae_contig21253:783..8911622815870.5204637-CDS-L-elsbetiae_contig21253:783..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 784..891 -
1691683158.1244764-CDS-L-elsbetiae_contig21253:783..8911691683158.1244764-CDS-L-elsbetiae_contig21253:783..891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 784..891 -
1622815870.531778-CDS-L-elsbetiae_contig21253:1616..17331622815870.531778-CDS-L-elsbetiae_contig21253:1616..1733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 1617..1733 -
1691683158.1323771-CDS-L-elsbetiae_contig21253:1616..17331691683158.1323771-CDS-L-elsbetiae_contig21253:1616..1733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21253 1617..1733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21253.6486.1

>prot_L-elsbetiae_contig21253.6486.1 ID=prot_L-elsbetiae_contig21253.6486.1|Name=mRNA_L-elsbetiae_contig21253.6486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MNVAEQALNVVTRSTPRDFVSIMELRNAILAWEQEHRGQEEFVICKTMKA
ILTGLVEKDGKCSEIETIPEGGSAKELTRAERESPFVFAFSEGALSHEAG
ARGVNGLDGHIDGFTFSIGLQG*
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mRNA from alignment at L-elsbetiae_contig21253:44..1826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21253.6486.1 ID=mRNA_L-elsbetiae_contig21253.6486.1|Name=mRNA_L-elsbetiae_contig21253.6486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1783bp|location=Sequence derived from alignment at L-elsbetiae_contig21253:44..1826- (Laminarionema elsbetiae ELsaHSoW15)
AGCTTGATCGAGCAGGTTGAAGCAGCTCGCCGCAGCACGGTCACGCTCGA
CCATGCATCAATCCTCCCCTTGGCACGGTCCCTTGAACGAGAGATGAACG
TTGCAGAACAAGCGCTCAATGTGGTAACAAGATCGACACCCCGAGACTTT
GTATCCATCATGGAACTTCGCAATGCTATACTTGCATGGGAGCAAGAGCA
TCGCGGGCAGGTCAGTTCATCGCACCTCTCCGCGTCGCCAAGACGCTCTG
AAATTTAGTAGTTCCACCTGATCTAGTGATCCACACTCATCTATAACAAT
CGACGTCGTTACTTGTGGTATCCATCGTTTGTGGCAACCTCCATCACATA
GCATCCGGGTCCCAAACAAAAGTGCTGCATCATTTCATGAACAAATTATG
AACTTTACCGGCGGGAGAGGAAAATGTACACTTGCCAATCATTTGATGAT
TCCCCAAAATTGTTGAGGAGCAACCAACGAATACGCCCATGCTGGTGGTC
TGAACCATGCGGCACGCTAAAAGTATTTGGTGCCCTGTGGCGATGAGAAA
GAATAACCAAGGCAATCATGGGGACGCTTCGAAAAGCGACTTCCGGATGG
TCATGCCATTGTGCATGGTGAGTGGTCCCAAGGGCGATGCGGAAAGCTGC
TTTTAAGACGATTGTGCCGTTGGGCATACAGTAGCGAATATCCTTTGCCT
AACACGCCCCCCCCCCCCCCCCCCCCCCCTCCCTTCCTCCTTTCACATAC
CCCCCCCCCAGGACGGGTATTTGATCACAGAAACAAGAACNNNNNNNNNN
GGGGGTCCCAAGGGGGGTCGGGAAAGCTTTTTTTAAGACTATTTTGCCCT
TGGGCATACAGTAGCGAAAATCCTTTGCCTAACACCCCCCCCCCCCCCCC
CCCTATTCTCGTTTCGTGTTAAAAACTGCCTCCAGGAGGAGTTTGTAATC
TGCAAAACAATGAAGGCCATTCTGACTGGCCTTGTGGAAAAGGATGGCAA
ATGTAGCGAAATCGAGACAATACCAGAAGGAGGATCTGCGAAGGTGGGGG
TTAATATTTTTGGGCTGTGCGGAGGACGATTGAGCTGGTTTGAGCGGGAA
ATAATTATCCGAGTCTTGTGGCCCTCTTTCTTCCGGTTGTTCTTGTTGGC
CATGCTTCAAAACGAGAGTTTGGCCACACGCAACGCACATGCCCCACACG
ACTGGCACGCCCAGAGATAGCAAGCAGAATAAAAATCACACGCTCGAAGT
GGTGCAATGGTGATCGGTGCCCTAGGGGCCGACAACTGGGTGGTGCTGAG
CTATTTTTTTTGCTGGCTGCTGAATATTCACATAACCGGAACCCAGTGTG
ATTGTCGGGCCATTGATTGCACCCCATTTAAAAAAATCCGATATGATAAA
TCCGATCCTACAAGAAACCGTCTTAGAAGATGCCTGGTACCAAATTATCT
CAATATGCCTATTACGGTCTACAACAAATCTGAGACCCTCCACCCACTTT
TTTTATTGCAGGAGCTGACACGTGCTGAGAGAGAGTCTCCTTTTGTTTTC
GCATTCTCGGAGGGGGCGCTGTCGCATGAGGCGGGGGCTCGTGGTGTAAA
TGGTTTGGATGGACACATCGATGGGTTCACTTTCAGTATTGGACTCCAAG
GTTGATCAAGTGCGCAGCAGCTGCACTTTCATTGGATGTATGATCCTTTT
CCCACCGCTCCGCTGAAGGCTGGATACGATGCCAAGTGGGTCGATGTGCC
CGTCATTGTTGACTTGGTGGCGTATGTTTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21253:44..1826-

>mRNA_L-elsbetiae_contig21253.6486.1 ID=mRNA_L-elsbetiae_contig21253.6486.1|Name=mRNA_L-elsbetiae_contig21253.6486.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig21253:44..1826- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTTGCAGAACAAGCGCTCAATGTGGTAACAAGATCGACACCCCG
AGACTTTGTATCCATCATGGAACTTCGCAATGCTATACTTGCATGGGAGC
AAGAGCATCGCGGGCAGATGAACGTTGCAGAACAAGCGCTCAATGTGGTA
ACAAGATCGACACCCCGAGACTTTGTATCCATCATGGAACTTCGCAATGC
TATACTTGCATGGGAGCAAGAGCATCGCGGGCAGGAGGAGTTTGTAATCT
GCAAAACAATGAAGGCCATTCTGACTGGCCTTGTGGAAAAGGATGGCAAA
TGTAGCGAAATCGAGACAATACCAGAAGGAGGATCTGCGAAGGAGGAGTT
TGTAATCTGCAAAACAATGAAGGCCATTCTGACTGGCCTTGTGGAAAAGG
ATGGCAAATGTAGCGAAATCGAGACAATACCAGAAGGAGGATCTGCGAAG
GAGCTGACACGTGCTGAGAGAGAGTCTCCTTTTGTTTTCGCATTCTCGGA
GGGGGCGCTGTCGCATGAGGCGGGGGCTCGTGGTGTAAATGGTTTGGATG
GACACATCGATGGGTTCACTTTCAGTATTGGACTCCAAGGTTGAGAGCTG
ACACGTGCTGAGAGAGAGTCTCCTTTTGTTTTCGCATTCTCGGAGGGGGC
GCTGTCGCATGAGGCGGGGGCTCGTGGTGTAAATGGTTTGGATGGACACA
TCGATGGGTTCACTTTCAGTATTGGACTCCAAGGTTGA
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