mRNA_L-elsbetiae_contig2124.6481.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2124.6481.1
Unique NamemRNA_L-elsbetiae_contig2124.6481.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2124.6481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2124contigL-elsbetiae_contig2124:3094..5357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002020.1
Exons3
Model size474
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2124.6481.1prot_L-elsbetiae_contig2124.6481.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2124 3113..5357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.1443057-UTR-L-elsbetiae_contig2124:3093..31121622815870.1443057-UTR-L-elsbetiae_contig2124:3093..3112Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2124 3094..3112 +
1691683157.924446-UTR-L-elsbetiae_contig2124:3093..31121691683157.924446-UTR-L-elsbetiae_contig2124:3093..3112Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2124 3094..3112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.155047-CDS-L-elsbetiae_contig2124:3112..32681622815870.155047-CDS-L-elsbetiae_contig2124:3112..3268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 3113..3268 +
1691683157.933062-CDS-L-elsbetiae_contig2124:3112..32681691683157.933062-CDS-L-elsbetiae_contig2124:3112..3268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 3113..3268 +
1622815870.165098-CDS-L-elsbetiae_contig2124:4032..41131622815870.165098-CDS-L-elsbetiae_contig2124:4032..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 4033..4113 +
1691683157.940536-CDS-L-elsbetiae_contig2124:4032..41131691683157.940536-CDS-L-elsbetiae_contig2124:4032..4113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 4033..4113 +
1622815870.1828907-CDS-L-elsbetiae_contig2124:5141..53571622815870.1828907-CDS-L-elsbetiae_contig2124:5141..5357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 5142..5357 +
1691683157.948108-CDS-L-elsbetiae_contig2124:5141..53571691683157.948108-CDS-L-elsbetiae_contig2124:5141..5357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2124 5142..5357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2124.6481.1

>prot_L-elsbetiae_contig2124.6481.1 ID=prot_L-elsbetiae_contig2124.6481.1|Name=mRNA_L-elsbetiae_contig2124.6481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MGRTRRDSGKGGGGGGGGGQGLAGGDLQHFSSSVEGRRGDGAEQFNYVNP
MNAHASRGRVGEDGTPLKGGIADSNHSKGGFAQLLRKCMFLRKRWLIKQK
KRPDSLASSNSSSKRNSRRRQGGFRSNPSSSSVNDRDRVNHDGEDDDAVS
E
back to top

mRNA from alignment at L-elsbetiae_contig2124:3094..5357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2124.6481.1 ID=mRNA_L-elsbetiae_contig2124.6481.1|Name=mRNA_L-elsbetiae_contig2124.6481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2264bp|location=Sequence derived from alignment at L-elsbetiae_contig2124:3094..5357+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGCGGGACGATTCCAGATGGGTCGGACTCGCCGCGACTCGGGGAAAG
GTGGTGGCGGCGGCGGCGGCGGCGGGCAGGGCTTGGCAGGCGGCGACTTG
CAGCACTTCTCCTCGTCTGTGGAGGGGAGGCGTGGCGACGGAGCCGAGCA
GTTCAACTACGTGAACCCGATGAACGTGAGGGATCCTGAGCCGGCCTTTT
TGCCCCTTCGTCGTTGTGGTTATCGTTGTTGTTGTTGCCGTTGCCGTTGT
CGTCGTTGCCGCTGTCGCTGTCGCTGCCGCTGCCGTGCTAATGCGGAGAT
ACCTGGCGTGACGTCATAGATGACGTCGTGCGTATTAAAACGGCTCTTCC
CGCAAGGGAGAGGAGAGGAGAGGAGAGGAGGCCACTCTTTACTTTTTTGT
GCGGTTTCTTGTTGTCCCCCCCCCCCCTCCTATTATGGCGGACGCCCCCC
CCCACGTAGAGAATGAAACTGCTGTTGCAAACCTTGGGGAAGTTTTTTTT
CTTTTCACGGGTTGTGTGTGTTTGGCTCTGTGCCCACCCGCCTTGATGCC
TGCCTGTCAACGGGGAAAAGTGATGAGGGCTAGGGTTACGATACATGTTT
TATTTTATTTTATTTTTGAAGTTTCTCCGACAGAGGCAGCACGCTAAATA
TTGCGTCATCGGTAGATGGCAGTTCGAACCGGCGGTTGCATCTCGACAAC
ACCTGAACCCTTCCTCTCCCCCCCCCCTCCGCCTTCTTAAAACATGAAAA
CGCCTGCTAAGATACGCGAAAAACCAGGAGAAGAGACGGACCGACCCTGA
CCGCTCGCTGCCTGTTTGCTTGCCTGCCTGCCTGCCTGCCTGCGCGCTTT
TTCTCCTCTTTGGCCTGTGTTTTAACTAAATGTTTTTGTGTGTTTTTGTT
TGCTCTTGCGTTGCGTTTGCCATTGCCTTTGCGTCACAGGCGCACGCCAG
CCGCGGAAGGGTCGGCGAGGACGGGACCCCGCTCAAGGGCGGCATCGCCG
ACAGCAACCACTCGAAAGGGGTGAGAAGAGCCTGACCGGTACAAAAACAA
ATTGAATCTCACGGAGTCCCGTCTCACTACTGTTTGTGGGTTTTAGGATT
TGTTTTTGATTTTACATATGTTTCTCTTTCAAAAAGTATTTACATGAATA
CGTATACATACCGCAGTAGAGGGTCCACCCCCCCCCCTCCTGATTGACCC
CGGTTGGGTCGTCTAGCCAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCA
GACGACGAATGATGCCTTTGACGGGAATGGAAAAAAACAAGAAAATGTGT
AAATGTGTCTCCTCTTTGTGTCGTTCTGTGTGTGAGTCGTTCTTTCTGGA
TGGTGGGTTGCATGCATTTGGTGTAAGGTCACTCACTCCGCACCCATTTT
CTCTCTTCCCTGCTCTTCTCCCCTCCCGATCTGTTTCCTGTCGAGCCAGC
GTTAGTTAGTAAGTTTGATTTTCTCCCTCTTTTTTCAGAGTTGCTTGGAG
GTACAGAGCTACATTTACGCGCGATTGTGGTTGGAGAGGCGGCGGGGACG
GGGGGTGCAGGCAACGCTCTCGAGCGGCAGCCGCAGACGTAGTGTACCGT
GAGAATGCGGGAGGGTCATCGCACGGGAAGGGTGCAGTATTTTTTTTCCA
AGCCGATAGATACCCCGAAGATGGAGGTGGTGGGGGTGCCAGTCTTGCAA
AAAAAAAATGCAAAAAATCCTCGGGTAAGATTTTCCTTACCCGTTCTCGA
GATATCGAGATATCGGCTCGGCAAAACCCACGGCGCCTGCGGCATATATT
TATATTTTTTTTATTCCCAGCCGATCGATAGGTATCTTTTAGAAGGAGAG
GGATCTTGCCGACCTTGCAGAAAAATAAATAAATCGAAAAGGCTTATTCC
GGGCAAGATATCTCGCTCCCCGTTGTCGAGATGCACACACGCACGCACGC
ACGCACACGCACACACACACACACACACACACACACACACGCACACACAC
ACACACACACACACACGCACACGCATGCACGCACGCTCTCTCCTCCAGGG
GTTTGCCCAGCTCCTGAGGAAGTGCATGTTCCTGAGGAAGCGCTGGCTCA
TCAAGCAGAAGAAGCGGCCGGATTCGCTGGCCTCGTCCAACTCGTCCTCC
AAGAGGAATAGCAGGAGGCGCCAGGGCGGCTTCCGCAGCAACCCCTCCTC
CTCCTCCGTCAACGACCGCGACCGCGTCAACCACGACGGCGAGGATGATG
ACGCCGTCAGCGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2124:3094..5357+

>mRNA_L-elsbetiae_contig2124.6481.1 ID=mRNA_L-elsbetiae_contig2124.6481.1|Name=mRNA_L-elsbetiae_contig2124.6481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig2124:3094..5357+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCGGACTCGCCGCGACTCGGGGAAAGGTGGTGGCGGCGGCGGCGG
CGGCGGGCAGGGCTTGGCAGGCGGCGACTTGCAGCACTTCTCCTCGTCTG
TGGAGGGGAGGCGTGGCGACGGAGCCGAGCAGTTCAACTACGTGAACCCG
ATGAACATGGGTCGGACTCGCCGCGACTCGGGGAAAGGTGGTGGCGGCGG
CGGCGGCGGCGGGCAGGGCTTGGCAGGCGGCGACTTGCAGCACTTCTCCT
CGTCTGTGGAGGGGAGGCGTGGCGACGGAGCCGAGCAGTTCAACTACGTG
AACCCGATGAACGCGCACGCCAGCCGCGGAAGGGTCGGCGAGGACGGGAC
CCCGCTCAAGGGCGGCATCGCCGACAGCAACCACTCGAAAGGGGCGCACG
CCAGCCGCGGAAGGGTCGGCGAGGACGGGACCCCGCTCAAGGGCGGCATC
GCCGACAGCAACCACTCGAAAGGGGGGTTTGCCCAGCTCCTGAGGAAGTG
CATGTTCCTGAGGAAGCGCTGGCTCATCAAGCAGAAGAAGCGGCCGGATT
CGCTGGCCTCGTCCAACTCGTCCTCCAAGAGGAATAGCAGGAGGCGCCAG
GGCGGCTTCCGCAGCAACCCCTCCTCCTCCTCCGTCAACGACCGCGACCG
CGTCAACCACGACGGCGAGGATGATGACGCCGTCAGCGAGGGGTTTGCCC
AGCTCCTGAGGAAGTGCATGTTCCTGAGGAAGCGCTGGCTCATCAAGCAG
AAGAAGCGGCCGGATTCGCTGGCCTCGTCCAACTCGTCCTCCAAGAGGAA
TAGCAGGAGGCGCCAGGGCGGCTTCCGCAGCAACCCCTCCTCCTCCTCCG
TCAACGACCGCGACCGCGTCAACCACGACGGCGAGGATGATGACGCCGTC
AGCGAG
back to top