mRNA_L-elsbetiae_contig21234.6479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21234.6479.1
Unique NamemRNA_L-elsbetiae_contig21234.6479.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21234.6479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21234contigL-elsbetiae_contig21234:119..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size532
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815870.1135657-CDS-L-elsbetiae_contig21234:118..6491622815870.1135657-CDS-L-elsbetiae_contig21234:118..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21234 119..649 +
1691683157.913156-CDS-L-elsbetiae_contig21234:118..6491691683157.913156-CDS-L-elsbetiae_contig21234:118..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21234 119..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21234.6479.1prot_L-elsbetiae_contig21234.6479.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21234 119..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21234.6479.1

>prot_L-elsbetiae_contig21234.6479.1 ID=prot_L-elsbetiae_contig21234.6479.1|Name=mRNA_L-elsbetiae_contig21234.6479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
GVFWWVVCVCVCCVCAFFFGGDYTFLQRGSGSVCCESLQRTDRTGPPTAP
RSPARPIVSGSCGRIKPAYRERRCTRYVEKNRMRGGGGGAPPSSSGNLNL
TMCFSGHKDLPSSCTYLRDCFFPISAQAQYFSPVCDVCEFTALLFFILYS
HPLDHPCRKSRHFVHAVCSEQGGTVRG
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mRNA from alignment at L-elsbetiae_contig21234:119..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21234.6479.1 ID=mRNA_L-elsbetiae_contig21234.6479.1|Name=mRNA_L-elsbetiae_contig21234.6479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig21234:119..649+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGTTTTGGTGGGTCGTGTGTGTGTGTGTGTGTTGTGTTTGTGCTTT
TTTTTTTGGCGGTGATTATACCTTCCTGCAGAGGGGTTCAGGCAGCGTGT
GTTGCGAGAGTCTTCAACGAACTGACAGGACTGGGCCGCCCACTGCCCCC
CGTTCTCCCGCACGCCCAATCGTTAGCGGAAGTTGCGGGAGAATTAAACC
TGCGTACCGTGAGAGAAGGTGTACGCGGTATGTTGAGAAAAACCGGATGA
GGGGGGGAGGGGGGGGGGCGCCGCCGTCGTCGTCTGGGAATCTTAACCTT
ACGATGTGTTTTTCGGGGCACAAGGACCTACCATCCTCCTGTACGTATCT
ACGAGATTGTTTTTTTCCCATTTCAGCGCAAGCGCAATATTTCTCGCCCG
TTTGTGACGTTTGTGAATTTACAGCTCTCCTTTTTTTTATTCTTTATTCG
CACCCCCTTGACCATCCATGTAGAAAAAGTCGCCATTTTGTTCACGCGGT
TTGTTCAGAACAGGGGGGCACTGTGCGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21234:119..649+

>mRNA_L-elsbetiae_contig21234.6479.1 ID=mRNA_L-elsbetiae_contig21234.6479.1|Name=mRNA_L-elsbetiae_contig21234.6479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig21234:119..649+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGTTTTGGTGGGTCGTGTGTGTGTGTGTGTGTTGTGTTTGTGCTTT
TTTTTTTGGCGGTGATTATACCTTCCTGCAGAGGGGTTCAGGCAGCGTGT
GTTGCGAGAGTCTTCAACGAACTGACAGGACTGGGCCGCCCACTGCCCCC
CGTTCTCCCGCACGCCCAATCGTTAGCGGAAGTTGCGGGAGAATTAAACC
TGCGTACCGTGAGAGAAGGTGTACGCGGTATGTTGAGAAAAACCGGATGA
GGGGGGGAGGGGGGGGGGCGCCGCCGTCGTCGTCTGGGAATCTTAACCTT
ACGATGTGTTTTTCGGGGCACAAGGACCTACCATCCTCCTGTACGTATCT
ACGAGATTGTTTTTTTCCCATTTCAGCGCAAGCGCAATATTTCTCGCCCG
TTTGTGACGTTTGTGAATTTACAGCTCTCCTTTTTTTTATTCTTTATTCG
CACCCCCTTGACCATCCATGTAGAAAAAGTCGCCATTTTGTTCACGCGGT
TTGTTCAGAACAGGGGGGCACTGTGCGTGGGGGGGTGTTTTGGTGGGTCG
TGTGTGTGTGTGTGTGTTGTGTTTGTGCTTTTTTTTTTGGCGGTGATTAT
ACCTTCCTGCAGAGGGGTTCAGGCAGCGTGTGTTGCGAGAGTCTTCAACG
AACTGACAGGACTGGGCCGCCCACTGCCCCCCGTTCTCCCGCACGCCCAA
TCGTTAGCGGAAGTTGCGGGAGAATTAAACCTGCGTACCGTGAGAGAAGG
TGTACGCGGTATGTTGAGAAAAACCGGATGAGGGGGGGAGGGGGGGGGGC
GCCGCCGTCGTCGTCTGGGAATCTTAACCTTACGATGTGTTTTTCGGGGC
ACAAGGACCTACCATCCTCCTGTACGTATCTACGAGATTGTTTTTTTCCC
ATTTCAGCGCAAGCGCAATATTTCTCGCCCGTTTGTGACGTTTGTGAATT
TACAGCTCTCCTTTTTTTTATTCTTTATTCGCACCCCCTTGACCATCCAT
GTAGAAAAAGTCGCCATTTTGTTCACGCGGTTTGTTCAGAACAGGGGGGC
ACTGTGCGTGGG
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