mRNA_L-elsbetiae_contig21227.6476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21227.6476.1
Unique NamemRNA_L-elsbetiae_contig21227.6476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21227.6476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21227contigL-elsbetiae_contig21227:1065..1581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.9244466-CDS-L-elsbetiae_contig21227:1064..11841622815869.9244466-CDS-L-elsbetiae_contig21227:1064..1184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21227 1065..1184 +
1691683157.8302293-CDS-L-elsbetiae_contig21227:1064..11841691683157.8302293-CDS-L-elsbetiae_contig21227:1064..1184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21227 1065..1184 +
1622815869.9370234-CDS-L-elsbetiae_contig21227:1446..15811622815869.9370234-CDS-L-elsbetiae_contig21227:1446..1581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21227 1447..1581 +
1691683157.839953-CDS-L-elsbetiae_contig21227:1446..15811691683157.839953-CDS-L-elsbetiae_contig21227:1446..1581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21227 1447..1581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21227.6476.1prot_L-elsbetiae_contig21227.6476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21227 1065..1581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21227.6476.1

>prot_L-elsbetiae_contig21227.6476.1 ID=prot_L-elsbetiae_contig21227.6476.1|Name=mRNA_L-elsbetiae_contig21227.6476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MIRVLPLSSWTHHACDQRTRIGDTVTSNNAESLINQVGEATRRLEPLKML
EALVDQAAATCAKRAKLGVNSSEIFTPHAVKSFET
back to top

mRNA from alignment at L-elsbetiae_contig21227:1065..1581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21227.6476.1 ID=mRNA_L-elsbetiae_contig21227.6476.1|Name=mRNA_L-elsbetiae_contig21227.6476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=517bp|location=Sequence derived from alignment at L-elsbetiae_contig21227:1065..1581+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAGGGTGCTGCCCCTGTCGTCGTGGACTCACCACGCATGTGACCA GAGGACTCGGATCGGCGACACCGTTACGAGCAACAACGCCGAGTCCCTGA TCAACCAAGTAGGCGAAGCGGTGAGATCCTGAATAATAGGCAGTGAACTG TACATAGGAGCGACCGCAGAGCGGGACCTGGTTTGGATTTATTTCGTGGG GCAAGGCCCAAGGCTTTTCGCGATAGTCGCTCTCCTTGCGTTGTATGCGA GGGGCCCTTGGTTTCGTGGAGAGCAGGTGTATCTGCCATCAAGACGCTGA GCTTCTGTGATGTCGGGTTCACCTCGACTACCTACCAGCTGAGTTCTTGT GGTGTCATTTCCCCCCGACCGTGTGTTGCCAGACGCGTCGGTTGGAACCG CTCAAGATGCTTGAAGCGCTCGTGGACCAGGCTGCCGCTACGTGCGCCAA GCGCGCCAAGCTCGGAGTGAACTCCAGCGAGATCTTCACGCCGCACGCCG TCAAGTCGTTCGAAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig21227:1065..1581+

>mRNA_L-elsbetiae_contig21227.6476.1 ID=mRNA_L-elsbetiae_contig21227.6476.1|Name=mRNA_L-elsbetiae_contig21227.6476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig21227:1065..1581+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAGGGTGCTGCCCCTGTCGTCGTGGACTCACCACGCATGTGACCA
GAGGACTCGGATCGGCGACACCGTTACGAGCAACAACGCCGAGTCCCTGA
TCAACCAAGTAGGCGAAGCGATGATAAGGGTGCTGCCCCTGTCGTCGTGG
ACTCACCACGCATGTGACCAGAGGACTCGGATCGGCGACACCGTTACGAG
CAACAACGCCGAGTCCCTGATCAACCAAGTAGGCGAAGCGACGCGTCGGT
TGGAACCGCTCAAGATGCTTGAAGCGCTCGTGGACCAGGCTGCCGCTACG
TGCGCCAAGCGCGCCAAGCTCGGAGTGAACTCCAGCGAGATCTTCACGCC
GCACGCCGTCAAGTCGTTCGAAACGACGCGTCGGTTGGAACCGCTCAAGA
TGCTTGAAGCGCTCGTGGACCAGGCTGCCGCTACGTGCGCCAAGCGCGCC
AAGCTCGGAGTGAACTCCAGCGAGATCTTCACGCCGCACGCCGTCAAGTC
GTTCGAAACG
back to top