mRNA_L-elsbetiae_contig2122.6474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2122.6474.1
Unique NamemRNA_L-elsbetiae_contig2122.6474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2122.6474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2122contigL-elsbetiae_contig2122:3750..4778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2122.6474.1prot_L-elsbetiae_contig2122.6474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2122 3750..4771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.801439-CDS-L-elsbetiae_contig2122:3749..40071622815869.801439-CDS-L-elsbetiae_contig2122:3749..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 3750..4007 -
1691683157.7406952-CDS-L-elsbetiae_contig2122:3749..40071691683157.7406952-CDS-L-elsbetiae_contig2122:3749..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 3750..4007 -
1622815869.8145688-CDS-L-elsbetiae_contig2122:4717..47711622815869.8145688-CDS-L-elsbetiae_contig2122:4717..4771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 4718..4771 -
1691683157.7517953-CDS-L-elsbetiae_contig2122:4717..47711691683157.7517953-CDS-L-elsbetiae_contig2122:4717..4771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 4718..4771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.8246348-UTR-L-elsbetiae_contig2122:4771..47781622815869.8246348-UTR-L-elsbetiae_contig2122:4771..4778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2122 4772..4778 -
1691683157.767877-UTR-L-elsbetiae_contig2122:4771..47781691683157.767877-UTR-L-elsbetiae_contig2122:4771..4778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2122 4772..4778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2122.6474.1

>prot_L-elsbetiae_contig2122.6474.1 ID=prot_L-elsbetiae_contig2122.6474.1|Name=mRNA_L-elsbetiae_contig2122.6474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MIQEVLECMQTNISDTKQVAERYENDLLQAWRFQHRAEIALRDRANREEQ
AFLLSWLLQHSVRPSFDDLTTLSKLPAAVDRAPDDWFHRWCLHTVVSADN
PFIP
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mRNA from alignment at L-elsbetiae_contig2122:3750..4778-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2122.6474.1 ID=mRNA_L-elsbetiae_contig2122.6474.1|Name=mRNA_L-elsbetiae_contig2122.6474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1029bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:3750..4778- (Laminarionema elsbetiae ELsaHSoW15)
CTACGCTATGATCCAGGAAGTGCTCGAGTGTATGCAGACGAATATCTCAG
ATACAAAGCAGGTGCGATTATTTGAGCTTGATATATGTTTCGAATTGCGA
GCAACGAGGGGCGTTCATGTTTGTGTACGACTCTTTTGCAATCACTCTCT
TACAGATCGTGATAAGTTCGAAATAATTGAATTCCGACGAAAACTCCGAA
AGGGAAGGAACGAGTGCTTTCACACGGACTCTTCAAAGCGCGTACTTTTT
TGAACCGAATCCCCACGACGCTAACAGCCATCCCTGGCCAAAGTACCAGC
AGCGCAGCTTTGCGCTTGAAAGTGTTGTGATAATGAACTTCATTGTGATA
TTGGATAGATTAAGAGACCGTGTGTTGGCACAACGGATGTCCACTTGTTT
ATCCAGTCGAACGAAGTAAACATCGTAAGTAGCTGCTACATGTGTAGGCT
GCCGTCATTTCTTACTCAAGGATCCAAAAACGCTAGAGGGTTTAGGATCC
GTTTCGCACTTTGTTTTACAAATAACATTTCCTGCGGCACTTTTTCAGGG
ACGAATTTTGATAAATCGCTCGACTGCCCTGTCAAAGTCCACGTTTTCGG
AATCTTTGAACGTATGTCAGTCCTCTGCTCGGAATCTCTGAACGTATGTC
AGTCCTCTGCTCGTTTTTACCATTTTTGGGGAGAAGAAAGTTGAAGGCAC
GACACCAGATTCCGCGCCGCCCGGTTTTGGTCTGCTTTGGATCCTCCTCC
TCCCGAACTATAAATACGCAGGTTGCTGAGAGGTATGAAAACGACCTTTT
GCAAGCCTGGCGTTTTCAACACCGGGCTGAAATAGCGCTACGTGACAGGG
CAAATCGCGAGGAGCAAGCATTTCTGTTATCTTGGCTGCTGCAACACTCC
GTGCGACCATCTTTCGATGATCTCACGACGCTGTCGAAGCTTCCAGCTGC
GGTTGATCGTGCGCCTGACGATTGGTTCCACAGGTGGTGTTTGCACACCG
TGGTATCCGCCGACAACCCGTTCATCCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2122:3750..4778-

>mRNA_L-elsbetiae_contig2122.6474.1 ID=mRNA_L-elsbetiae_contig2122.6474.1|Name=mRNA_L-elsbetiae_contig2122.6474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:3750..4778- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCAGGAAGTGCTCGAGTGTATGCAGACGAATATCTCAGATACAAA
GCAGATGATCCAGGAAGTGCTCGAGTGTATGCAGACGAATATCTCAGATA
CAAAGCAGGTTGCTGAGAGGTATGAAAACGACCTTTTGCAAGCCTGGCGT
TTTCAACACCGGGCTGAAATAGCGCTACGTGACAGGGCAAATCGCGAGGA
GCAAGCATTTCTGTTATCTTGGCTGCTGCAACACTCCGTGCGACCATCTT
TCGATGATCTCACGACGCTGTCGAAGCTTCCAGCTGCGGTTGATCGTGCG
CCTGACGATTGGTTCCACAGGTGGTGTTTGCACACCGTGGTATCCGCCGA
CAACCCGTTCATCCCTGTTGCTGAGAGGTATGAAAACGACCTTTTGCAAG
CCTGGCGTTTTCAACACCGGGCTGAAATAGCGCTACGTGACAGGGCAAAT
CGCGAGGAGCAAGCATTTCTGTTATCTTGGCTGCTGCAACACTCCGTGCG
ACCATCTTTCGATGATCTCACGACGCTGTCGAAGCTTCCAGCTGCGGTTG
ATCGTGCGCCTGACGATTGGTTCCACAGGTGGTGTTTGCACACCGTGGTA
TCCGCCGACAACCCGTTCATCCCT
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