mRNA_L-elsbetiae_contig2122.6473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.110e-35 Identity = 78/152 (51.32%), Postives = 92/152 (60.53%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481 +T LPGAQF +AG+ P YY VPA+RM+LD VY+GMLV F VL EDG +T GE FA Y+ GI E E+RR F Y D WN L +LG + GG IVR AD + WGR LYALSAPL+FSR LFFAQ+L Sbjct: 783 LTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGP--------------LTPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQML 920
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 134 bits (337), Expect = 2.170e-33 Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487 +T LPG QFIVA + A P YY+VPA+RM+LDF+VYVGM+ + FVL ES + ++ + ++ G +++ G + E E++RG Y +D WN L LG + G ++RW D TS WG YALSAPL+ +R LFFAQ+L + Sbjct: 725 LTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHSTTESDSGLDGIVAHRLSLSEGACAL-IFITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQF 877
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 129 bits (323), Expect = 1.640e-31 Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487 +T LPGAQFIVA + A P YY+VPA+RM+LDF+VYVGM+ FVL S + ++ G +++ G + E E++RG Y +D WN L LG + G ++RW D TS WG YALSAPL+ +R LFFAQ+L + Sbjct: 708 LTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHSTTGSDPGLDGIADHRFSLSEGACAL-IFITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQF 860
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 124 bits (311), Expect = 6.590e-30 Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEG----EVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484 +T P AQFIVAG+AA+ + Y+ VP +RM+LD +VY+G+LV FVL E S +G E++F+ + + AV +AGG++ E E+ R + Y+ED WN L +LG + GFI R D T G YALSAPLL SR LFF Q+ P Sbjct: 527 LTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAV-IAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHP 682
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.160e-29 Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFA-VYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487 + PGAQF VAGVAA P +YY VPA+RM+LDF+ YV ++ + L+F + G+ +V T GE FA ++++ G++ E E+ G ++Y +D WN L L + G ++R D TSPWG YALSAPLL LFFAQVLP+ Sbjct: 371 LAFFPGAQFAVAGVAADPSTYYRVPAMRMLLDFVAYVEIIA--ALGYLVFFHSPTGGVLGDDGISNVEFTWGEGSFAAIFISAGVYREGLEMSMGIDKYFKDQWNVLDALALLCLSVGLVIRGVDWTSPWGPAFYALSAPLLVCSVLFFAQVLPF 523
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 122 bits (306), Expect = 3.230e-29 Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 2 Query: 14 SVGKMTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVR-WADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484 ++ +T PGA+FI+AG ++P SYY VPALRM LD + Y+ M+++F FV+L E G++S+ EIVF +Y+ GGI E EI EYM D WN L V + LGG I R + R LYALSAPL F+R LFFAQ+LP Sbjct: 1095 ALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWL-------------EIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILP 1239
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 119 bits (297), Expect = 5.110e-28 Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 2 Query: 26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRG--EIVFA-VYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484 +T PGAQ IVAG+AA+P+ Y+ VPA+RM+LD +VY+GM+V FVL E S EG Q V T E A +++ GG++ E E+ R F Y ED WN L +L + G + R D S G YAL+APLL SR LFF Q+ P Sbjct: 706 LTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHP 861
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 116 bits (291), Expect = 3.300e-27 Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 2 Query: 14 SVGKMTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWG-RGLYALSAPLLFSRTLFFAQVLP 484 ++ +T PGA+FI+AG+ ++P SYY VPALRM LD + Y+ M+++F FV+L + G++ + EIVF +Y+ GGI E EI EYM D WN L V + LGG I R + R LYALSAPL F+R LFF Q+LP Sbjct: 850 TLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWM-------------EIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMYGQVDDQSSRALYALSAPLAFARILFFVQILP 994
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 103 bits (258), Expect = 8.760e-23 Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 29 TVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481 T LPGAQF++ G+ KP +YY VP +RM+L F V++ L L+ L +DGE SN E + F EIV + + ++R GF E+ D WN L L ++ GG +R + GR L+ALSAPL+FSR LFF Q L Sbjct: 469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFH----VMAEIV----------SNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFL 605
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.090e-22 Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 29 TVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481 T LPGAQF++ G+ KP +YY VP +RM+L F V++ L L+ L +D E SN E + F EIV + + ++R GF E+ D WN L L ++ GG +R +R GR L+ALSAPL+FSR LFF Q L Sbjct: 481 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFH----VMAEIV----------SNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIDNRDVHQGRALFALSAPLVFSRVLFFGQFL 617 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2122.6473.1 >prot_L-elsbetiae_contig2122.6473.1 ID=prot_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp NYCLLGRKDDCSTRGAVYCCRRCSKTSQLLRCAGFEDDVGLLGVRRHARAback to top mRNA from alignment at L-elsbetiae_contig2122:2398..3282- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2122.6473.1 ID=mRNA_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=885bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:2398..3282- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2122:2398..3282- >mRNA_L-elsbetiae_contig2122.6473.1 ID=mRNA_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:2398..3282- (Laminarionema elsbetiae ELsaHSoW15)back to top |