mRNA_L-elsbetiae_contig2122.6473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2122.6473.1
Unique NamemRNA_L-elsbetiae_contig2122.6473.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.110e-35
Identity = 78/152 (51.32%), Postives = 92/152 (60.53%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481
            +T LPGAQF +AG+   P  YY VPA+RM+LD  VY+GMLV F   VL  EDG               +T GE  FA Y+  GI  E  E+RR F  Y  D WN L +LG  +  GG IVR AD  + WGR LYALSAPL+FSR LFFAQ+L
Sbjct:  783 LTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGP--------------LTPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQML 920          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.170e-33
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487
            +T LPG QFIVA + A P  YY+VPA+RM+LDF+VYVGM+ +   FVL     ES +    ++   + ++ G     +++  G + E  E++RG   Y +D WN L  LG +    G ++RW D TS WG   YALSAPL+ +R LFFAQ+L +
Sbjct:  725 LTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHSTTESDSGLDGIVAHRLSLSEGACAL-IFITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQF 877          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.640e-31
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487
            +T LPGAQFIVA + A P  YY+VPA+RM+LDF+VYVGM+     FVL      S      +      ++ G     +++  G + E  E++RG   Y +D WN L  LG +    G ++RW D TS WG   YALSAPL+ +R LFFAQ+L +
Sbjct:  708 LTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHSTTGSDPGLDGIADHRFSLSEGACAL-IFITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQF 860          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.590e-30
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEG----EVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484
            +T  P AQFIVAG+AA+ + Y+ VP +RM+LD +VY+G+LV    FVL     E S  +G    E++F+ +  +      AV +AGG++ E  E+ R +  Y+ED WN L +LG +    GFI R  D T   G   YALSAPLL SR LFF Q+ P
Sbjct:  527 LTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAV-IAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHP 682          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.160e-29
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFA-VYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLPY 487
            +   PGAQF VAGVAA P +YY VPA+RM+LDF+ YV ++    +  L+F    +    G+    +V  T GE  FA ++++ G++ E  E+  G ++Y +D WN L  L  +    G ++R  D TSPWG   YALSAPLL    LFFAQVLP+
Sbjct:  371 LAFFPGAQFAVAGVAADPSTYYRVPAMRMLLDFVAYVEIIA--ALGYLVFFHSPTGGVLGDDGISNVEFTWGEGSFAAIFISAGVYREGLEMSMGIDKYFKDQWNVLDALALLCLSVGLVIRGVDWTSPWGPAFYALSAPLLVCSVLFFAQVLPF 523          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.230e-29
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 2
Query:   14 SVGKMTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVR-WADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484
            ++  +T  PGA+FI+AG  ++P SYY VPALRM LD + Y+ M+++F  FV+L E G++S+               EIVF +Y+ GGI  E  EI     EYM D WN L V    + LGG I R +        R LYALSAPL F+R LFFAQ+LP
Sbjct: 1095 ALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWL-------------EIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILP 1239          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 5.110e-28
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 2
Query:   26 MTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRG--EIVFA-VYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVLP 484
            +T  PGAQ IVAG+AA+P+ Y+ VPA+RM+LD +VY+GM+V    FVL     E S  EG    Q V  T    E   A +++ GG++ E  E+ R F  Y ED WN L +L  +    G + R  D  S  G   YAL+APLL SR LFF Q+ P
Sbjct:  706 LTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHP 861          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.300e-27
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   14 SVGKMTVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWG-RGLYALSAPLLFSRTLFFAQVLP 484
            ++  +T  PGA+FI+AG+ ++P SYY VPALRM LD + Y+ M+++F  FV+L + G++ +               EIVF +Y+ GGI  E  EI     EYM D WN L V    + LGG I R   +      R LYALSAPL F+R LFF Q+LP
Sbjct:  850 TLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWM-------------EIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMYGQVDDQSSRALYALSAPLAFARILFFVQILP 994          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.760e-23
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   29 TVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481
            T LPGAQF++ G+  KP +YY VP +RM+L F V++  L L+    L  +DGE SN E  + F        EIV          + + ++R GF E+  D WN L  L  ++  GG  +R  +     GR L+ALSAPL+FSR LFF Q L
Sbjct:  469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFH----VMAEIV----------SNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFL 605          
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.090e-22
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   29 TVLPGAQFIVAGVAAKPHSYYDVPALRMMLDFLVYVGMLVLFCVFVLLFEDGESSNEEGEVIFQDVVITRGEIVFAVYLAGGIWAEMCEIRRGFEEYMEDGWNCLGVLGYVVSLGGFIVRWADRTSPWGRGLYALSAPLLFSRTLFFAQVL 481
            T LPGAQF++ G+  KP +YY VP +RM+L F V++  L L+    L  +D E SN E  + F        EIV          + + ++R GF E+  D WN L  L  ++  GG  +R  +R    GR L+ALSAPL+FSR LFF Q L
Sbjct:  481 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFH----VMAEIV----------SNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIDNRDVHQGRALFALSAPLVFSRVLFFGQFL 617          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2122.6473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FLB1_ECTSI1.110e-3551.32Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE2.170e-3342.86Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI1.640e-3142.86Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JG42_9PHAE6.590e-3043.95Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7G6K7_ECTSI1.160e-2943.23Transient Receptor Potential Channel. C terminally... [more]
A0A6H5LDE6_9PHAE3.230e-2944.94Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE5.110e-2844.23Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D8LT30_ECTSI3.300e-2743.04Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FMG5_ECTSI8.760e-2340.40Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5JX68_9PHAE1.090e-2240.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2122contigL-elsbetiae_contig2122:2398..3282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.7557878-CDS-L-elsbetiae_contig2122:2398..26191622815869.7557878-CDS-L-elsbetiae_contig2122:2398..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 2399..2619 -
1691683157.7191818-CDS-L-elsbetiae_contig2122:2398..26191691683157.7191818-CDS-L-elsbetiae_contig2122:2398..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 2399..2619 -
1622815869.7693415-CDS-L-elsbetiae_contig2122:3014..32821622815869.7693415-CDS-L-elsbetiae_contig2122:3014..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 3015..3282 -
1691683157.7308881-CDS-L-elsbetiae_contig2122:3014..32821691683157.7308881-CDS-L-elsbetiae_contig2122:3014..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2122 3015..3282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2122.6473.1prot_L-elsbetiae_contig2122.6473.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2122 2399..3282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2122.6473.1

>prot_L-elsbetiae_contig2122.6473.1 ID=prot_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
NYCLLGRKDDCSTRGAVYCCRRCSKTSQLLRCAGFEDDVGLLGVRRHARA
FLRLRSSIRGWRIKQRRGRGHLPRRGDHAGRDRLCCLSCGWNLGRNVRDT
EGVRGVHGRRLELFRCTGVCCLARRVYCPMGRSHESVGPRSVRPQCSTAI
FSHPVLRAGSPLP
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mRNA from alignment at L-elsbetiae_contig2122:2398..3282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2122.6473.1 ID=mRNA_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=885bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:2398..3282- (Laminarionema elsbetiae ELsaHSoW15)
AACTACTGCCTCCTCGGTAGGAAAGATGACTGTTCTACCCGGGGCGCAGT TTATTGTTGCAGGCGTTGCAGCAAAACCTCACAGCTACTACGATGTGCCG GCTTTGAGGATGATGTTGGACTTCTTGGTGTACGTCGGCATGCTCGTGCT TTTCTGCGTCTTCGTTCTTCTATTCGAGGATGGAGAATCAAGCAACGAAG AGGGAGAGGTCATCTTCCAAGACGTGGTGATCACGCGGGGAGAGATCGTC TTTGCTGTCTATCTTGCGGTGAGTGAAGTCTAACAGCGACACCTTCCCTT CCTTCGCTTGCATCGGATTTATCTGAGCGGGCGTATACGGTCGAAATATA TGTCTACCGCTGAAGTGTTAGTCAAGGCACGCCTCAGGTGTACGGCATTC GGCGGCATCATGAAAGCCGTTGTTTTCAACCTGGTACTGGCTATATTTGC GCACGTTATGGCATGCTTTCGACGTGCATCCTTTCGACGTGCGGGTCGTG GCGAGTGTTCAGCATGATGTTTGCCCCCCACCAAACGGTAGGCTGTGCCT AATGAAGACCCGCACATGAACAGCCACCTCACAACCCTGGCTCACTACGA GACCGCTGTGAAAAGTTGGAGACGAACTTTGTCGTTTTCTGCCTCGTGCC GATGCCTCCACAGGGTGGAATCTGGGCAGAAATGTGCGAGATACGGAGGG GGTTCGAGGAGTACATGGAAGACGGCTGGAATTGTTTAGGTGTACTGGGG TATGTTGTCTCGCTCGGCGGGTTTATTGTCCGATGGGCCGATCGCACGAG TCCGTGGGGCCGAGGTCTGTACGCCCTCAGTGCTCCACTGCTATTTTCTC GCACCCTGTTCTTCGCGCAGGTTCTCCCCTACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2122:2398..3282-

>mRNA_L-elsbetiae_contig2122.6473.1 ID=mRNA_L-elsbetiae_contig2122.6473.1|Name=mRNA_L-elsbetiae_contig2122.6473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig2122:2398..3282- (Laminarionema elsbetiae ELsaHSoW15)
AACTACTGCCTCCTCGGTAGGAAAGATGACTGTTCTACCCGGGGCGCAGT
TTATTGTTGCAGGCGTTGCAGCAAAACCTCACAGCTACTACGATGTGCCG
GCTTTGAGGATGATGTTGGACTTCTTGGTGTACGTCGGCATGCTCGTGCT
TTTCTGCGTCTTCGTTCTTCTATTCGAGGATGGAGAATCAAGCAACGAAG
AGGGAGAGGTCATCTTCCAAGACGTGGTGATCACGCGGGGAGAGATCGTC
TTTGCTGTCTATCTTGCGAACTACTGCCTCCTCGGTAGGAAAGATGACTG
TTCTACCCGGGGCGCAGTTTATTGTTGCAGGCGTTGCAGCAAAACCTCAC
AGCTACTACGATGTGCCGGCTTTGAGGATGATGTTGGACTTCTTGGTGTA
CGTCGGCATGCTCGTGCTTTTCTGCGTCTTCGTTCTTCTATTCGAGGATG
GAGAATCAAGCAACGAAGAGGGAGAGGTCATCTTCCAAGACGTGGTGATC
ACGCGGGGAGAGATCGTCTTTGCTGTCTATCTTGCGGGTGGAATCTGGGC
AGAAATGTGCGAGATACGGAGGGGGTTCGAGGAGTACATGGAAGACGGCT
GGAATTGTTTAGGTGTACTGGGGTATGTTGTCTCGCTCGGCGGGTTTATT
GTCCGATGGGCCGATCGCACGAGTCCGTGGGGCCGAGGTCTGTACGCCCT
CAGTGCTCCACTGCTATTTTCTCGCACCCTGTTCTTCGCGCAGGTTCTCC
CCTACCAGGTGGAATCTGGGCAGAAATGTGCGAGATACGGAGGGGGTTCG
AGGAGTACATGGAAGACGGCTGGAATTGTTTAGGTGTACTGGGGTATGTT
GTCTCGCTCGGCGGGTTTATTGTCCGATGGGCCGATCGCACGAGTCCGTG
GGGCCGAGGTCTGTACGCCCTCAGTGCTCCACTGCTATTTTCTCGCACCC
TGTTCTTCGCGCAGGTTCTCCCCTACCA
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