mRNA_L-elsbetiae_contig21210.6472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21210.6472.1
Unique NamemRNA_L-elsbetiae_contig21210.6472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21210.6472.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.660e-23
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -1 
Query:   64 DPPAVASMRSVIDKLQDREELRVTVEVIAANMERMVDIKCNDKQWRKLRDAASSALDTTFLESDS 258
            DPPAVAS+RS IDKLQD+EE R+ VE+IAANMERMVDIKC D  W+KLRD++ SALDT F+ESDS
Sbjct:  417 DPPAVASIRSAIDKLQDKEETRLVVEIIAANMERMVDIKCTDSHWKKLRDSSKSALDTAFMESDS 481
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21210.6472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPH1_ECTSI1.660e-2375.38Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21210contigL-elsbetiae_contig21210:1765..2066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.7226415-CDS-L-elsbetiae_contig21210:1764..20641622815869.7226415-CDS-L-elsbetiae_contig21210:1764..2064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21210 1765..2064 +
1691683157.7092917-CDS-L-elsbetiae_contig21210:1764..20641691683157.7092917-CDS-L-elsbetiae_contig21210:1764..2064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21210 1765..2064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21210.6472.1prot_L-elsbetiae_contig21210.6472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21210 1765..2064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21210.6472.1

>prot_L-elsbetiae_contig21210.6472.1 ID=prot_L-elsbetiae_contig21210.6472.1|Name=mRNA_L-elsbetiae_contig21210.6472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
DRLGRCLAAALASEPPIIVAVAVALQEGRVQRRARRVSELPPLLVVALDV
HHPLHVGRDDLHRDPELLPVLQLVDHGPHRGHRRGVHRKRPGGGGGGAFP
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mRNA from alignment at L-elsbetiae_contig21210:1765..2066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21210.6472.1 ID=mRNA_L-elsbetiae_contig21210.6472.1|Name=mRNA_L-elsbetiae_contig21210.6472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=302bp|location=Sequence derived from alignment at L-elsbetiae_contig21210:1765..2066+ (Laminarionema elsbetiae ELsaHSoW15)
GACCGCCTTGGGCGCTGCCTTGCCGCCGCCCTTGCCTCCGAACCCCCCAT
CATCGTCGCTGTCGCTGTCGCTCTCCAGGAAGGTCGTGTCCAGCGCCGAG
CTCGCCGCGTCTCGGAGCTTCCTCCACTGCTTGTCGTTGCACTTGATGTC
CACCATCCTCTCCATGTTGGCCGCGATGACCTCCACCGTGACCCGGAGCT
CCTCCCTGTCCTGCAGCTTGTCGATCACGGACCGCATCGAGGCCACCGCC
GGGGGGTCCACCGGAAGAGACCCGGCGGCGGCGGCGGCGGCGCCTTCCCC
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21210:1765..2066+

>mRNA_L-elsbetiae_contig21210.6472.1 ID=mRNA_L-elsbetiae_contig21210.6472.1|Name=mRNA_L-elsbetiae_contig21210.6472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig21210:1765..2066+ (Laminarionema elsbetiae ELsaHSoW15)
GACCGCCTTGGGCGCTGCCTTGCCGCCGCCCTTGCCTCCGAACCCCCCAT
CATCGTCGCTGTCGCTGTCGCTCTCCAGGAAGGTCGTGTCCAGCGCCGAG
CTCGCCGCGTCTCGGAGCTTCCTCCACTGCTTGTCGTTGCACTTGATGTC
CACCATCCTCTCCATGTTGGCCGCGATGACCTCCACCGTGACCCGGAGCT
CCTCCCTGTCCTGCAGCTTGTCGATCACGGACCGCATCGAGGCCACCGCC
GGGGGGTCCACCGGAAGAGACCCGGCGGCGGCGGCGGCGGCGCCTTCCCC
GACCGCCTTGGGCGCTGCCTTGCCGCCGCCCTTGCCTCCGAACCCCCCAT
CATCGTCGCTGTCGCTGTCGCTCTCCAGGAAGGTCGTGTCCAGCGCCGAG
CTCGCCGCGTCTCGGAGCTTCCTCCACTGCTTGTCGTTGCACTTGATGTC
CACCATCCTCTCCATGTTGGCCGCGATGACCTCCACCGTGACCCGGAGCT
CCTCCCTGTCCTGCAGCTTGTCGATCACGGACCGCATCGAGGCCACCGCC
GGGGGGTCCACCGGAAGAGACCCGGCGGCGGCGGCGGCGGCGCCTTCCCC
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