mRNA_L-elsbetiae_contig21209.6470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21209.6470.1
Unique NamemRNA_L-elsbetiae_contig21209.6470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: D8LEH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH2_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.210e-62
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   13 QVYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAFE 318
            +VYAT  SFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDS GCSTSPPEHSFPQRFREAYAMEV AFE
Sbjct:  230 EVYATARSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSTGCSTSPPEHSFPQRFREAYAMEVGAFE 331          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A7S1Z936_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z936_TRICV)

HSP 1 Score: 92.0 bits (227), Expect = 8.960e-21
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   16 VYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            VYAT  S   +LEEAG++D+A  +  F  GAV TL M+R S YGYD R E+ G++G++S+GN  +      D+ G       HSFPQRF  A+A E+ AF
Sbjct:   53 VYATGTSSRRELEEAGIQDNATMVMKFKKGAVVTLTMSRSSTYGYDQRCEIFGDRGLVSVGNDRAHNATLSDAAGTHGPKLAHSFPQRFERAFASELDAF 152          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: K3WJ44_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ44_GLOUD)

HSP 1 Score: 94.7 bits (234), Expect = 9.370e-21
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   13 QVYATDHSFLPQLEEAGVKDSAHCLFTFP-SGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            +VYA   S  P+L E  V D A     FP SG + T++++R + YGYD R+EV GEKGML + NPP + L    + G ++    HSFP+RFREAY +E+ AF
Sbjct:  236 KVYAFGTSLSPELREVNVMDKASVWLEFPNSGVICTMDLSRSALYGYDQRVEVSGEKGMLQVVNPPKTSLVRASADGITSDVLSHSFPERFREAYVLEMDAF 337          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A7S1DDD5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDD5_CYCTE)

HSP 1 Score: 91.3 bits (225), Expect = 2.760e-20
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   10 IQVYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            + VYAT  S   +L  AGV D+A  +  F  GA  TL M+R + YGYD R E+ G+KGM+S+GN  +    F +  G   S  +HSFPQRF +A+A E+ AF
Sbjct:   96 VSVYATGTSSTDELAAAGVHDNATMVMKFSRGATVTLFMSRSATYGYDQRCEIFGDKGMISVGNEHAHSAIFSNGDGIHQSKLKHSFPQRFNQAFASELDAF 197          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A7R9U697_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U697_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.270e-20
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   13 QVYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            ++  +  SF+P+L+E  V D+A     FP G V TLE  R ++YGYD RIE+ G  GM  +GNPP S     +S G  +S  +HSFP+RF  AY +E+ AF
Sbjct:  203 RILGSGTSFMPELKEVDVMDTASLHLEFPGGVVATLEADRFASYGYDQRIEIFGTGGMAQVGNPPQSSTFLANSAGLHSSRLKHSFPERFFAAYRVEIDAF 303          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A6G0XX82_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX82_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.600e-19
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   13 QVYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            QV+A   S  P+L    V D A    TFPSG V T+++ R ++YGYD RIEV G  GML + N   + +    + G   SP  HSFPQRFR+AYA+E+  F
Sbjct:  193 QVFAYGTSLQPELAAVNVMDKASVWLTFPSGVVCTMDLARHASYGYDQRIEVFGRDGMLEVQNVNKTAVRASTAGGIHQSPFLHSFPQRFRDAYALEIEHF 293          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A2D0L5H0_9GAMM (Dehydrogenase n=1 Tax=Xenorhabdus kozodoii TaxID=351676 RepID=A0A2D0L5H0_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 9.130e-19
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   16 VYAT-DHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            +YA   H   P +  AG  D+A  +  FPSGA+ T+  +R S YGYD R+E+ GEKG+LS GN   + +EF+   GC+T+ PE+ F QR+R+AY  E + F
Sbjct:  189 IYAQGSHLVDPAIGTAGDIDTAFIVMKFPSGAMATITNSRRSGYGYDQRLELHGEKGLLSAGNIKENSVEFWGENGCTTAKPEYFFLQRYRDAYIAEWSHF 289          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: W7TLJ5_9STRA (Putative oxidoreductase yrbe n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLJ5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.970e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   16 VYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQG-CSTSPPEHSFPQRFREAYAMEVAAF 315
            VYAT  +F P L    + D+AHCL  FPSG + ++E++R S YGYD RIEV G +GML + N  ++ +    + G  + + P HSFP+RF  AY MEV  F
Sbjct:  197 VYATGSAFHPSLRAHRIIDTAHCLLHFPSGVLASIELSRSSPYGYDQRIEVCGTEGMLYIKNELNTHVVSVTAAGGIAHANPVHSFPERFARAYVMEVEDF 297          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: C7BPM0_PHOAA (Putative myo-inositol 2-dehydrogenase n=42 Tax=Photorhabdus TaxID=29487 RepID=C7BPM0_PHOAA)

HSP 1 Score: 87.8 bits (216), Expect = 1.770e-18
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   16 VYATDHSFL-PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAME 303
            +YA   + + P + + G  D+A  +  FPSGA+  +  +R S YGYD RIE+ GEKG+LS GN   + +E +++ GC T+ PEH F QR+REAY  E
Sbjct:  189 IYAQGSNLVDPAIGQVGDIDTAFIVMKFPSGAIAAITNSRRSGYGYDQRIELHGEKGLLSAGNIKENSVELWENSGCLTAKPEHFFLQRYREAYIAE 285          
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Match: A0A077PBU4_XENBV (Inositol 2-dehydrogenase n=10 Tax=Xenorhabdus TaxID=626 RepID=A0A077PBU4_XENBV)

HSP 1 Score: 87.0 bits (214), Expect = 3.420e-18
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   16 VYATDHSFL-PQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGYDNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAMEVAAF 315
            +YA   + + P + +AG  D+A  +  FPSGA+ T+  +R S YGYD R+E+ GEKG+L+ GN   + +E +  +GC  + PEH F QR+REAY  E + F
Sbjct:  189 IYAQGSNLVDPAIGQAGDIDTAFIVMKFPSGAMATITNSRRSGYGYDQRLELHGEKGLLTAGNIKENSVELWGEEGCLAAKPEHFFLQRYREAYIAEWSHF 289          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21209.6470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH2_ECTSI5.210e-6295.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1Z936_TRICV8.960e-2146.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K3WJ44_GLOUD9.370e-2146.08Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1DDD5_CYCTE2.760e-2045.10Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9U697_9STRA5.270e-2044.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0XX82_9STRA2.600e-1945.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D0L5H0_9GAMM9.130e-1944.55Dehydrogenase n=1 Tax=Xenorhabdus kozodoii TaxID=3... [more]
W7TLJ5_9STRA9.970e-1945.54Putative oxidoreductase yrbe n=2 Tax=Monodopsidace... [more]
C7BPM0_PHOAA1.770e-1844.33Putative myo-inositol 2-dehydrogenase n=42 Tax=Pho... [more]
A0A077PBU4_XENBV3.420e-1842.57Inositol 2-dehydrogenase n=10 Tax=Xenorhabdus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21209contigL-elsbetiae_contig21209:557..2334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue4.1e-50
Seed eggNOG ortholog2880.D8LEH2
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
EC1.1.1.18,1.1.1.369
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size318
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21209.6470.1prot_L-elsbetiae_contig21209.6470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21209 557..2334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815869.5575037-CDS-L-elsbetiae_contig21209:556..7211622815869.5575037-CDS-L-elsbetiae_contig21209:556..721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 557..721 +
1691683157.5626426-CDS-L-elsbetiae_contig21209:556..7211691683157.5626426-CDS-L-elsbetiae_contig21209:556..721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 557..721 +
1622815869.571767-CDS-L-elsbetiae_contig21209:1489..16121622815869.571767-CDS-L-elsbetiae_contig21209:1489..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 1490..1612 +
1691683157.5809298-CDS-L-elsbetiae_contig21209:1489..16121691683157.5809298-CDS-L-elsbetiae_contig21209:1489..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 1490..1612 +
1622815869.5843947-CDS-L-elsbetiae_contig21209:2304..23341622815869.5843947-CDS-L-elsbetiae_contig21209:2304..2334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 2305..2334 +
1691683157.5964596-CDS-L-elsbetiae_contig21209:2304..23341691683157.5964596-CDS-L-elsbetiae_contig21209:2304..2334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21209 2305..2334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21209.6470.1

>prot_L-elsbetiae_contig21209.6470.1 ID=prot_L-elsbetiae_contig21209.6470.1|Name=mRNA_L-elsbetiae_contig21209.6470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MWYIQVYATDHSFLPQLEEAGVKDSAHCLFTFPSGAVFTLEMTRCSAYGY
DNRIEVMGEKGMLSLGNPPSSGLEFFDSQGCSTSPPEHSFPQRFREAYAM
EVAAFE
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mRNA from alignment at L-elsbetiae_contig21209:557..2334+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21209.6470.1 ID=mRNA_L-elsbetiae_contig21209.6470.1|Name=mRNA_L-elsbetiae_contig21209.6470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1778bp|location=Sequence derived from alignment at L-elsbetiae_contig21209:557..2334+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTACATACAGGTGTACGCGACCGATCACTCCTTTCTGCCGCAGCT GGAGGAGGCCGGCGTCAAGGACTCGGCGCACTGCCTCTTCACCTTCCCCT CGGGGGCGGTCTTCACCCTGGAGATGACCCGGTGCAGCGCGTACGGCTAC GACAACCGAATCGAGGTGCGCATACATAACATACATACATGCATGCGTGT ATGGTATGCGTGCATTTTTCTTTGTGGTGCCTCCGTCCGTGGCGCGGGAT TAGCGAACACACCAGCGAGTGAGAAGACGGGCGAGAGAGAAGTTAAAGTG GCACGCGCGGAAGACGATGCACACTGCTGTTGTATGGAGTAGCACAGAAT AGATGGTTGTTGTTGTTGAGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTA GTCTCACATTAGCTCGCTAGCTAGCCCAAAACAATGGGGGCCCGTAGCCA CAACAACAGGGCATACTCGACGCCGCCGAAGAAAAACAAAAACGTGCGTG GGTATGACTAGACTTCTACAGTTATTCTTCGCTGCTACTTTGGGGGAACA ACAGGCGATGGCTGAAGGCTTCGTTTCGAAACTCGGGAGGGAGACAAAAA GTGGAGCTTGAGAGCGTCAGCCCGTCTCTCTGGGAAGTAAGTAGTAATCG CAACATCATCAGATATATACGGCGAAGCTGCACCGGGACGAGTGTAGCTG GAAAGCCTGTTACTCCTCGCGCCCGGCCGAATCCACGAGCGCACGCGCCA AGATTTCGGCACATAAACGTGCGCCAAGACCCGAAGACACGGCCCGCGCG AAAGACGCTCCTTCCCACCCGCCTTCCGCCCGCCCTCCTTGGCGTATCTC CGCGTGGTCCGTCCGTGCTTTTCCCCGCGTGTTCACATATCCACCTTGCG AGTGTGCTATTTATTTATTACAACTACGTACAGGTGATGGGCGAGAAAGG CATGCTGAGCCTGGGAAACCCGCCGAGCTCCGGCCTGGAGTTCTTCGACA GCCAAGGGTGCTCCACGTCGCCCCCGGAACACTCATTCCCGCAGCGCTTC CGAGAGGTCTGTACCTATCTTTGCATGTCTAAGAAACGACCTGGTATCTG ATACGCCGGTCTGTCTTCCGATAGGTGTTTGTATCAATACGTAGATCTTG CATATCCCGGCTCCCTCGTTCTCAAGATAAAACCTAACCCGCTGAATGGA CGGGCACCAGCTTTTTGAGGAGTTGAAATCACGCTGCACGGAGCCGTCGC CGAAGCGCGGACCACTTCGGGGACACCCGACGGCAACCAAATCAATGCGG AGCCTGATGCAAGATATATCTAGACTACTTAAAAGTAGATCTGCTTTTTC TGGTGTAGTTTTCCCGCAAGGTTTCTATCCGGTTGCGCCAAGAGCCTGCT GCTGCAAACGACGCGTTATTGCGTTTCTCTGTCTCTCTGTCTCTCTTTCT CTCTCTCTTTCTCTCTCTCTCTCTTCGTTCCGTATGTATCTACATACCCA CAATATGTCCTAGTAATAATAAAGCGACCGGACCCTGCCCCTGCATAATG GTACACCGAGCTAGCGAGCGTGTGTGTTATGAATAAATACACACAACCTA ACCCCCCCCGACTATTTTCTCTCCCGACGCTACTGTATGTTCCCCATGCC ACCCTTTCGCTGTGGCGCGGCCGGCCGTCCGTCCTCTGGGTCCCGCCTTC GTTTTTTTTTTTTTTTTCTGCACGCCTGAAAAATTAAAATTAAAAAAGGC GTACGCGATGGAAGTAGCAGCGTTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21209:557..2334+

>mRNA_L-elsbetiae_contig21209.6470.1 ID=mRNA_L-elsbetiae_contig21209.6470.1|Name=mRNA_L-elsbetiae_contig21209.6470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig21209:557..2334+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTACATACAGGTGTACGCGACCGATCACTCCTTTCTGCCGCAGCT
GGAGGAGGCCGGCGTCAAGGACTCGGCGCACTGCCTCTTCACCTTCCCCT
CGGGGGCGGTCTTCACCCTGGAGATGACCCGGTGCAGCGCGTACGGCTAC
GACAACCGAATCGAGATGTGGTACATACAGGTGTACGCGACCGATCACTC
CTTTCTGCCGCAGCTGGAGGAGGCCGGCGTCAAGGACTCGGCGCACTGCC
TCTTCACCTTCCCCTCGGGGGCGGTCTTCACCCTGGAGATGACCCGGTGC
AGCGCGTACGGCTACGACAACCGAATCGAGGTGATGGGCGAGAAAGGCAT
GCTGAGCCTGGGAAACCCGCCGAGCTCCGGCCTGGAGTTCTTCGACAGCC
AAGGGTGCTCCACGTCGCCCCCGGAACACTCATTCCCGCAGCGCTTCCGA
GAGGTGATGGGCGAGAAAGGCATGCTGAGCCTGGGAAACCCGCCGAGCTC
CGGCCTGGAGTTCTTCGACAGCCAAGGGTGCTCCACGTCGCCCCCGGAAC
ACTCATTCCCGCAGCGCTTCCGAGAGGCGTACGCGATGGAAGTAGCAGCG
TTCGAGGCGTACGCGATGGAAGTAGCAGCGTTCGAG
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