mRNA_L-elsbetiae_contig2117.6452.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2117.6452.1
Unique NamemRNA_L-elsbetiae_contig2117.6452.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2117.6452.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 6.720e-44
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:   16 SLAFIAAFLAAPAAAVEYTVSTCADLADVDDTLATGLTIDSSTFACDEYTRFRVRNTMSLKATVPAVEFSNFSLKVLGELTVEPDVVFSGVVEEVHAG 309
            SL FIA+ LA PAAAVEY V+TCADLADVDDT  TGLTID++TFACDEYTRFRVRN+M+LKATV AVEF NFSLKVLGELTVEPDV F+GVV++   G
Sbjct:    5 SLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEG 102
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BLAST of mRNA_L-elsbetiae_contig2117.6452.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.660e-43
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:   16 SLAFIAAFLAAPAAAVEYTVSTCADLADVDDTLATGLTIDSSTFACDEYTRFRVRNTMSLKATVPAVEFSNFSLKVLGELTVEPDVVFSGVVEEVHAG 309
            SL  IA+ LAAPAAAVEYTV+TCADLADVDDT  T LTID+STFACDEYTRFRVRN M+LKATVPAVEF NFSLKVLGELTVEPDV+F+GVV++V  G
Sbjct:    5 SLTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNG 102
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BLAST of mRNA_L-elsbetiae_contig2117.6452.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.330e-41
Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:   16 SLAFIAAFLAAPAAAVEYTVSTCADLADVDDTLATGLTIDSSTFACDEYTRFRVRNTMSLKATVPAVEFSNFSLKVLGELTVEPDVVFSGVVEEVHAG 309
            SL  IA  LAAPAAAVEYTV+TCADLADVDDT  TGLTID+STFACDEYTRF VRN+M+LKATV AVEF NFSLKVLGELTVEPDV F+GVV++V  G
Sbjct:    5 SLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNG 102
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BLAST of mRNA_L-elsbetiae_contig2117.6452.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.850e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   73 VSTCADLADVDDTLATGLTIDSSTFACDEYTRFRVRNTMSLKATVPAVEFSNFSLKVLGELTVEPDVVFSGV 288
            V +C + A +D  + T +TI  + FACDEYTR  +R+ M LK++V  V FSNF+LKV G LTVEPDVVF+GV
Sbjct:   26 VGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGV 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2117.6452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQG2_ECTSI6.720e-4478.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLJ6_ECTSI7.660e-4381.63Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI2.330e-4180.61Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE1.850e-1555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2117contigL-elsbetiae_contig2117:12498..12818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.6778793-CDS-L-elsbetiae_contig2117:12497..128181622815867.6778793-CDS-L-elsbetiae_contig2117:12497..12818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2117 12498..12818 +
1691683156.1939895-CDS-L-elsbetiae_contig2117:12497..128181691683156.1939895-CDS-L-elsbetiae_contig2117:12497..12818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2117 12498..12818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2117.6452.1prot_L-elsbetiae_contig2117.6452.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2117 12498..12818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2117.6452.1

>prot_L-elsbetiae_contig2117.6452.1 ID=prot_L-elsbetiae_contig2117.6452.1|Name=mRNA_L-elsbetiae_contig2117.6452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MKSSSSLAFIAAFLAAPAAAVEYTVSTCADLADVDDTLATGLTIDSSTFA
CDEYTRFRVRNTMSLKATVPAVEFSNFSLKVLGELTVEPDVVFSGVVEEV
HAGRLS*
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mRNA from alignment at L-elsbetiae_contig2117:12498..12818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2117.6452.1 ID=mRNA_L-elsbetiae_contig2117.6452.1|Name=mRNA_L-elsbetiae_contig2117.6452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig2117:12498..12818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCTTCCTCGTCACTAGCTTTCATCGCTGCTTTCCTGGCAGCCCC
TGCTGCGGCGGTCGAGTACACGGTATCGACATGCGCCGATCTCGCGGACG
TGGATGACACCCTGGCCACAGGCCTCACCATCGACAGCAGCACCTTCGCC
TGCGATGAGTACACCCGCTTCCGCGTGCGCAACACCATGAGCCTCAAGGC
CACGGTTCCCGCTGTGGAGTTCTCCAACTTCTCGCTGAAGGTCCTCGGGG
AGCTTACGGTCGAGCCGGACGTGGTCTTCAGCGGCGTCGTGGAAGAGGTA
CACGCAGGGAGATTGTCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2117:12498..12818+

>mRNA_L-elsbetiae_contig2117.6452.1 ID=mRNA_L-elsbetiae_contig2117.6452.1|Name=mRNA_L-elsbetiae_contig2117.6452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig2117:12498..12818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCTTCCTCGTCACTAGCTTTCATCGCTGCTTTCCTGGCAGCCCC
TGCTGCGGCGGTCGAGTACACGGTATCGACATGCGCCGATCTCGCGGACG
TGGATGACACCCTGGCCACAGGCCTCACCATCGACAGCAGCACCTTCGCC
TGCGATGAGTACACCCGCTTCCGCGTGCGCAACACCATGAGCCTCAAGGC
CACGGTTCCCGCTGTGGAGTTCTCCAACTTCTCGCTGAAGGTCCTCGGGG
AGCTTACGGTCGAGCCGGACGTGGTCTTCAGCGGCGTCGTGGAAGAGGTA
CACGCAGGGAGATTGTCGTAGATGAAGTCTTCCTCGTCACTAGCTTTCAT
CGCTGCTTTCCTGGCAGCCCCTGCTGCGGCGGTCGAGTACACGGTATCGA
CATGCGCCGATCTCGCGGACGTGGATGACACCCTGGCCACAGGCCTCACC
ATCGACAGCAGCACCTTCGCCTGCGATGAGTACACCCGCTTCCGCGTGCG
CAACACCATGAGCCTCAAGGCCACGGTTCCCGCTGTGGAGTTCTCCAACT
TCTCGCTGAAGGTCCTCGGGGAGCTTACGGTCGAGCCGGACGTGGTCTTC
AGCGGCGTCGTGGAAGAGGTACACGCAGGGAGATTGTCGTAG
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