mRNA_L-elsbetiae_contig21149.6443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21149.6443.1
Unique NamemRNA_L-elsbetiae_contig21149.6443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21149.6443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21149contigL-elsbetiae_contig21149:1431..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.0091162-CDS-L-elsbetiae_contig21149:1430..19611622815867.0091162-CDS-L-elsbetiae_contig21149:1430..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21149 1431..1961 +
1691683155.7785795-CDS-L-elsbetiae_contig21149:1430..19611691683155.7785795-CDS-L-elsbetiae_contig21149:1430..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21149 1431..1961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21149.6443.1prot_L-elsbetiae_contig21149.6443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21149 1431..1961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21149.6443.1

>prot_L-elsbetiae_contig21149.6443.1 ID=prot_L-elsbetiae_contig21149.6443.1|Name=mRNA_L-elsbetiae_contig21149.6443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
AEAEAEAAAGTARRTRTAPWRWTPAAPRSSRPRGILPTSGSRKAPTPAAP
SRRRPSPRSGPGGHRPPTPLPRPRAFSPWAAAAGAAAVATAAAAAARGGR
APRRRGAPTGNSSGTVPCAESISSAWCPTSRGPRWRGRAGGPKRGRPSFR
ALGSGTTRARCPLPVRLRCRVSGTRRR
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mRNA from alignment at L-elsbetiae_contig21149:1431..1961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21149.6443.1 ID=mRNA_L-elsbetiae_contig21149.6443.1|Name=mRNA_L-elsbetiae_contig21149.6443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig21149:1431..1961+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGCGGAGGCGGAGGCGGCGGCGGGGACAGCGAGGAGGACTCGGAC
AGCTCCATGGAGGTGGACACCAGCAGCGCCTCGCAGCAGTCGCCCCCGCG
GGATCCTCCCCACCAGCGGCAGCCGCAAGGCGCCGACCCCCGCGGCGCCA
AGTCGTCGCCGCCCTTCTCCCCGCAGCGGTCCCGGCGGTCACCGTCCCCC
GACACCTCTTCCACGGCCTCGAGCTTTTTCTCCCTGGGCGGCGGCGGCGG
GGGCGGCGGCGGTGGCAACAGCAGCAGCGGCAGCAGCCAGAGGGGGACGG
GCTCCGCGGCGAAGAGGAGCTCCAACGGGCAACTCGTCGGGGACTGTCCC
GTGTGCGGAAAGCATTTCGAGCGCCTGGTGTCCCACCTCTCGAGGGCCAA
GGTGGAGGGGTCGTGCGGGAGGACCGAAAAGGGGAAGGCCTTCCTTCAGA
GCGTTGGGATCAGGAACCACAAGAGCAAGGTGTCCTCTTCCGGTGCGGTT
GCGGTGCCGGGTGAGCGGGACAAGACGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21149:1431..1961+

>mRNA_L-elsbetiae_contig21149.6443.1 ID=mRNA_L-elsbetiae_contig21149.6443.1|Name=mRNA_L-elsbetiae_contig21149.6443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig21149:1431..1961+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGCGGAGGCGGAGGCGGCGGCGGGGACAGCGAGGAGGACTCGGAC
AGCTCCATGGAGGTGGACACCAGCAGCGCCTCGCAGCAGTCGCCCCCGCG
GGATCCTCCCCACCAGCGGCAGCCGCAAGGCGCCGACCCCCGCGGCGCCA
AGTCGTCGCCGCCCTTCTCCCCGCAGCGGTCCCGGCGGTCACCGTCCCCC
GACACCTCTTCCACGGCCTCGAGCTTTTTCTCCCTGGGCGGCGGCGGCGG
GGGCGGCGGCGGTGGCAACAGCAGCAGCGGCAGCAGCCAGAGGGGGACGG
GCTCCGCGGCGAAGAGGAGCTCCAACGGGCAACTCGTCGGGGACTGTCCC
GTGTGCGGAAAGCATTTCGAGCGCCTGGTGTCCCACCTCTCGAGGGCCAA
GGTGGAGGGGTCGTGCGGGAGGACCGAAAAGGGGAAGGCCTTCCTTCAGA
GCGTTGGGATCAGGAACCACAAGAGCAAGGTGTCCTCTTCCGGTGCGGTT
GCGGTGCCGGGTGAGCGGGACAAGACGGCGGGCGGAGGCGGAGGCGGAGG
CGGCGGCGGGGACAGCGAGGAGGACTCGGACAGCTCCATGGAGGTGGACA
CCAGCAGCGCCTCGCAGCAGTCGCCCCCGCGGGATCCTCCCCACCAGCGG
CAGCCGCAAGGCGCCGACCCCCGCGGCGCCAAGTCGTCGCCGCCCTTCTC
CCCGCAGCGGTCCCGGCGGTCACCGTCCCCCGACACCTCTTCCACGGCCT
CGAGCTTTTTCTCCCTGGGCGGCGGCGGCGGGGGCGGCGGCGGTGGCAAC
AGCAGCAGCGGCAGCAGCCAGAGGGGGACGGGCTCCGCGGCGAAGAGGAG
CTCCAACGGGCAACTCGTCGGGGACTGTCCCGTGTGCGGAAAGCATTTCG
AGCGCCTGGTGTCCCACCTCTCGAGGGCCAAGGTGGAGGGGTCGTGCGGG
AGGACCGAAAAGGGGAAGGCCTTCCTTCAGAGCGTTGGGATCAGGAACCA
CAAGAGCAAGGTGTCCTCTTCCGGTGCGGTTGCGGTGCCGGGTGAGCGGG
ACAAGACGGCGG
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