mRNA_L-elsbetiae_contig2114.6439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2114.6439.1
Unique NamemRNA_L-elsbetiae_contig2114.6439.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2114.6439.1 vs. uniprot
Match: D8LEG5_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.740e-18
Identity = 74/175 (42.29%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:   28 TLRSHQSSRAASLSSSKHGDM-----SGG----VGKDEHAWGWGHSSSSTGGVSAAEQLHRKRSIAHVFGQPPPPPSRPGSASSLQQP-SAAEAVTPSVGRAGSGYGFKGAAGA-----------GDVRLLGVPAGDVP--PEFGLPRAR---RSSYHQQVGWESGVVETKSEDP 474
            ++RSH SSRAASL+SS++GD+      GG    +GK E AWGWGH+++      A  QLH  RS A++FG  P          S QQP S+AEAVTPS+GR GSGY F    G            G   ++GVP  + P  P+ G PR R   R    QQV   +G    K EDP
Sbjct:  463 SVRSHHSSRAASLTSSRNGDVVAPIGGGGSVAVIGKHETAWGWGHNTAXXX-XXAERQLHASRSKANLFGGDP----------SKQQPGSSAEAVTPSMGREGSGYSFHVMGGXXXXXXXXXXRPGQHEVVGVPVRERPLTPDLGKPRPRHPGRQQQQQQVWAGAGSARHKVEDP 626
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BLAST of mRNA_L-elsbetiae_contig2114.6439.1 vs. uniprot
Match: A0A6H5JVJ2_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-16
Identity = 68/156 (43.59%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:   25 GTLRSHQSSRAASLSSSKHGDM----SGG-----VGKDEHAWGWGHSSSSTGGVSAAEQLHRKRSIAHVFGQPPPPPSRPGSASSLQQP-SAAEAVTPSVGRAGSGYGFK----GAAGAGDVR-----LLGVPAGDVP--PEFGLPRARRSSYHQQ 429
            G++RSH SSRAASL+SS++G++    +GG     +GK E AWGWGH++++     A +QLH  R  A +FG  P          S QQP S+AEAVTPS+GR GSGY F     G+ G G  R     ++GVP  + P  P+ G PR R     QQ
Sbjct:  517 GSMRSHHSSRAASLTSSRNGEVVAPITGGGSVAVIGKHETAWGWGHNTAAXX-XXAEQQLHASRPKAKLFGGDP----------SKQQPGSSAEAVTPSMGREGSGYRFHVVGGGSGGNGGGRPGLHEVVGVPVRERPLMPDLGKPRPRHPGRQQQ 661
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2114.6439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEG5_ECTSI3.740e-1842.29Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JVJ2_9PHAE2.730e-1643.59Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2114contigL-elsbetiae_contig2114:3339..4042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D8LEG5
Preferred nameamt-1
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ammonium transmembrane transporter activity
EggNOG OGsCOG0004@1,KOG0682@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Ec32 ortholog descriptionammonium transporter
Ec32 orthologEc-00_010700.1
Exons1
Model size704
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2114.6439.1prot_L-elsbetiae_contig2114.6439.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2114 3426..3821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.7749727-UTR-L-elsbetiae_contig2114:3338..34251622815866.7749727-UTR-L-elsbetiae_contig2114:3338..3425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 3339..3425 +
1691683155.6555166-UTR-L-elsbetiae_contig2114:3338..34251691683155.6555166-UTR-L-elsbetiae_contig2114:3338..3425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 3339..3425 +
1622815866.806973-UTR-L-elsbetiae_contig2114:3821..40421622815866.806973-UTR-L-elsbetiae_contig2114:3821..4042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 3822..4042 +
1691683155.6799197-UTR-L-elsbetiae_contig2114:3821..40421691683155.6799197-UTR-L-elsbetiae_contig2114:3821..4042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2114 3822..4042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.793429-CDS-L-elsbetiae_contig2114:3425..38211622815866.793429-CDS-L-elsbetiae_contig2114:3425..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 3426..3821 +
1691683155.670703-CDS-L-elsbetiae_contig2114:3425..38211691683155.670703-CDS-L-elsbetiae_contig2114:3425..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2114 3426..3821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2114.6439.1

>prot_L-elsbetiae_contig2114.6439.1 ID=prot_L-elsbetiae_contig2114.6439.1|Name=mRNA_L-elsbetiae_contig2114.6439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MSGGVGKDEHAWGWGHSSSSTGGVSAAEQLHRKRSIAHVFGQPPPPPSRP
GSASSLQQPSAAEAVTPSVGRAGSGYGFKGAAGAGDVRLLGVPAGDVPPE
FGLPRARRSSYHQQVGWESGVVETKSEDPRF*
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mRNA from alignment at L-elsbetiae_contig2114:3339..4042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2114.6439.1 ID=mRNA_L-elsbetiae_contig2114.6439.1|Name=mRNA_L-elsbetiae_contig2114.6439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=704bp|location=Sequence derived from alignment at L-elsbetiae_contig2114:3339..4042+ (Laminarionema elsbetiae ELsaHSoW15)
GACCAGAGCACCTACGGCGGCGACGGGACCCTGCGGAGCCACCAGAGCTC
TCGAGCGGCGAGCTTGAGCAGCAGCAAGCATGGGGACATGAGCGGCGGCG
TGGGCAAGGACGAGCATGCGTGGGGTTGGGGCCACAGCAGCAGCTCGACG
GGGGGGGTGTCGGCGGCGGAGCAACTGCACCGGAAGAGATCGATCGCTCA
CGTGTTCGGCCAGCCGCCGCCGCCGCCGTCTCGGCCGGGCTCGGCGTCGT
CGCTGCAGCAGCCGTCGGCGGCGGAAGCCGTGACCCCGAGCGTCGGGCGA
GCGGGGTCGGGGTACGGCTTCAAGGGCGCCGCCGGCGCCGGTGACGTTCG
ACTCCTTGGGGTGCCTGCAGGCGACGTGCCGCCCGAGTTCGGGCTGCCTC
GGGCGAGAAGATCAAGCTACCATCAGCAAGTGGGCTGGGAGAGCGGGGTC
GTCGAGACAAAAAGCGAAGATCCCCGGTTTTGAGGTCAGGTTTCGTTTCG
AAACGTGGGATGTAATTGCTTGTATTTTGGGGGCGAGGGCGGGGGTAGAG
TTTATGTTTGGTGTGTGTGCGGGAGAGTACGGTCGTGGCGGTAGACCTCC
GGCCTTTGGCGGTGCCGCCGCGGTCCCTTTTTGCTAAAGTGCGTGTGGCG
GTCGTGCTAGCAGGTGTCGGCCGTCTTTCGCCACCGCCCTTGGCAGGAGC
GAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2114:3339..4042+

>mRNA_L-elsbetiae_contig2114.6439.1 ID=mRNA_L-elsbetiae_contig2114.6439.1|Name=mRNA_L-elsbetiae_contig2114.6439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig2114:3339..4042+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGGCGGCGTGGGCAAGGACGAGCATGCGTGGGGTTGGGGCCACAG
CAGCAGCTCGACGGGGGGGGTGTCGGCGGCGGAGCAACTGCACCGGAAGA
GATCGATCGCTCACGTGTTCGGCCAGCCGCCGCCGCCGCCGTCTCGGCCG
GGCTCGGCGTCGTCGCTGCAGCAGCCGTCGGCGGCGGAAGCCGTGACCCC
GAGCGTCGGGCGAGCGGGGTCGGGGTACGGCTTCAAGGGCGCCGCCGGCG
CCGGTGACGTTCGACTCCTTGGGGTGCCTGCAGGCGACGTGCCGCCCGAG
TTCGGGCTGCCTCGGGCGAGAAGATCAAGCTACCATCAGCAAGTGGGCTG
GGAGAGCGGGGTCGTCGAGACAAAAAGCGAAGATCCCCGGTTTTGAATGA
GCGGCGGCGTGGGCAAGGACGAGCATGCGTGGGGTTGGGGCCACAGCAGC
AGCTCGACGGGGGGGGTGTCGGCGGCGGAGCAACTGCACCGGAAGAGATC
GATCGCTCACGTGTTCGGCCAGCCGCCGCCGCCGCCGTCTCGGCCGGGCT
CGGCGTCGTCGCTGCAGCAGCCGTCGGCGGCGGAAGCCGTGACCCCGAGC
GTCGGGCGAGCGGGGTCGGGGTACGGCTTCAAGGGCGCCGCCGGCGCCGG
TGACGTTCGACTCCTTGGGGTGCCTGCAGGCGACGTGCCGCCCGAGTTCG
GGCTGCCTCGGGCGAGAAGATCAAGCTACCATCAGCAAGTGGGCTGGGAG
AGCGGGGTCGTCGAGACAAAAAGCGAAGATCCCCGGTTTTGA
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