mRNA_L-elsbetiae_contig2113.6436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2113.6436.1
Unique NamemRNA_L-elsbetiae_contig2113.6436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2113.6436.1 vs. uniprot
Match: A0A6H5JJU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU4_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 4.860e-52
Identity = 173/283 (61.13%), Postives = 186/283 (65.72%), Query Frame = 1 
Query:    1 QLLMVGQSVVRLVKAAQRYGPVVIVTESHERWVRGTAALLLPGGSAAACLEDVEIVSSKERFEGDFPNQPACWQIAAFSYVTNRHLLSPAAVARVRRANATASXXXXXXXXXXXXXXXXEGGXXXXXXXXXXXXXXXXXXALGRNRDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------AAALTLREHHPTIASKTVSLMEAPTPLELKNQLDLLSGKLELMFGHAS 720
            QLL VGQSVVRLV+AAQR+GPVVIVT+SHE WVRGTA LLLPGG+AAACLE+VE+VSS++RF  DFP+QPACWQIAAFSYVTNRHLLS  A  R RRANA A XXXXXXXXXXXXXXXX  G                       R+GS           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           AAALTLREHHP + +KTVSLME PTPLELKNQLDLL+ K  LMFGHAS
Sbjct:   50 QLLNVGQSVVRLVRAAQRHGPVVIVTDSHEDWVRGTAELLLPGGAAAACLENVEVVSSRDRFAKDFPDQPACWQIAAFSYVTNRHLLSRGATDRFRRANAAAXXXXXXXXXXXXXXXXXVEGGRSRGTAGREAAEGRDGGETVEEREGSADVGTACCATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVRVSTRRGGTLIAVATAPKNSEDKAAALTLREHHPNVVAKTVSLMEGPTPLELKNQLDLLADKFRLMFGHAS 332
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BLAST of mRNA_L-elsbetiae_contig2113.6436.1 vs. uniprot
Match: D7FUZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.410e-47
Identity = 109/240 (45.42%), Postives = 121/240 (50.42%), Query Frame = 1 
Query:    1 QLLMVGQSVVRLVKAAQRYGPVVIVTESHERWVRGTAALLLPGGSAAACLEDVEIVSSKERFEGDFPNQPACWQIAAFSYVTNRHLLSPAAVARVRRANATASXXXXXXXXXXXXXXXXEGGXXXXXXXXXXXXXXXXXXALGRNRDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAALTLREHHPTIASKTVSLMEAPTPLELKNQLDLLSGKLELMFGHAS 720
            QLL VGQSVVRLV+AAQR+GPVVIVT+SHE WVRGTA LLLPGG+AAACLE+VE+VSS++RF  DFP+QPACWQIAAFSYVTNRHLLS  A  R                                                                                                        REHHP + +KTVSLME PTPLELKNQLDLL+ K  LMFGHAS
Sbjct:   50 QLLNVGQSVVRLVRAAQRHGPVVIVTDSHEGWVRGTAELLLPGGAAAACLENVEVVSSRDRFAKDFPDQPACWQIAAFSYVTNRHLLSRGATDR-------------------------------------------------------------------------------------------------------FREHHPNVVAKTVSLMEGPTPLELKNQLDLLADKFRLMFGHAS 186
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BLAST of mRNA_L-elsbetiae_contig2113.6436.1 vs. uniprot
Match: A0A7J7IN39_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN39_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 2.400e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   25 VVRLVKAAQRYGPVVIVTESHERWVRGTAALLLPGGSAAACLEDVEIVSSKERFEGDFPNQPACWQIAAFSYVTNRH 255
            V+ ++K AQRYG V +VT +   WV+ +AA  +P         D+ I+S++  +E DFPN P+ W+  AF     +H
Sbjct:  341 VIGILKDAQRYGRVCVVTNAETGWVQLSAARFMPRVLRHLDASDIRIISARSVYEMDFPNSPSDWKTQAFRAELEKH 417
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BLAST of mRNA_L-elsbetiae_contig2113.6436.1 vs. uniprot
Match: A0A813FSU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FSU8_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 2.680e-5
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   34 LVKAAQRYGPVVIVTESHERWVRGTAALLLPGGSAAACLEDVEIVSSKERFEGDFPNQPACWQIAAFSYV 243
            L+  A+  G V+I++ +   WV  +    LP  S A C+E VEIVS++++FE  FP+ PA W++ AF  V
Sbjct:   92 LLSLAKTLGTVMIISNATSSWVHQSCRKYLP--SLAKCIESVEIVSARDKFEKSFPDNPAQWKMEAFCEV 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2113.6436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JJU4_9PHAE4.860e-5261.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ6_ECTSI1.410e-4745.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J7IN39_9RHOD2.400e-536.36Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A813FSU8_POLGL2.680e-540.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2113contigL-elsbetiae_contig2113:2883..4402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue7.2e-08
Seed eggNOG ortholog159749.K0SN83
Hectar predicted targeting categoryother localisation
EggNOG OGs28RT2@1,2S5YV@2759,2XC0M@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008760.1
Exons1
Model size1520
Cds size1320
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2113.6436.1prot_L-elsbetiae_contig2113.6436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2113 2892..4211 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.5425606-UTR-L-elsbetiae_contig2113:2882..28911622815866.5425606-UTR-L-elsbetiae_contig2113:2882..2891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2113 2883..2891 +
1691683155.4843862-UTR-L-elsbetiae_contig2113:2882..28911691683155.4843862-UTR-L-elsbetiae_contig2113:2882..2891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2113 2883..2891 +
1622815866.563789-UTR-L-elsbetiae_contig2113:4211..44021622815866.563789-UTR-L-elsbetiae_contig2113:4211..4402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2113 4212..4402 +
1691683155.5069883-UTR-L-elsbetiae_contig2113:4211..44021691683155.5069883-UTR-L-elsbetiae_contig2113:4211..4402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2113 4212..4402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.5528584-CDS-L-elsbetiae_contig2113:2891..42111622815866.5528584-CDS-L-elsbetiae_contig2113:2891..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2113 2892..4211 +
1691683155.496876-CDS-L-elsbetiae_contig2113:2891..42111691683155.496876-CDS-L-elsbetiae_contig2113:2891..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2113 2892..4211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2113.6436.1

>prot_L-elsbetiae_contig2113.6436.1 ID=prot_L-elsbetiae_contig2113.6436.1|Name=mRNA_L-elsbetiae_contig2113.6436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=440bp
MVGQSVVRLVKAAQRYGPVVIVTESHERWVRGTAALLLPGGSAAACLEDV
EIVSSKERFEGDFPNQPACWQIAAFSYVTNRHLLSPAAVARVRRANATAS
AAAAAVAASGPGGGSAEGGSSGGRGEASAAGNSSGGQALGRNRDGSGGGS
SSNGTSASTSGGGGDGGALAGGAGILMAVATSSRAAEDKAAALTLREHHP
TIASKTVSLMEAPTPLELKNQLDLLSGKLELMFGHASPPQPPLPPPTTLP
PPPPPSKTPAPSVSPSASSCSTSVATPEPRRYEEEEEGGGSDGSPMWDLS
GSSSSCPSSPAAPATPRRHPAAAAAAAAAAAAAGGKKPAQRREARFPGYN
GGEDEEEAGGDHDNDGDDDDDDEDYLTATCSASTMSSGSSTASTRAAWAS
LPPALHREASSPSSSSSTPFPRLWPPSPPSLLSPLRGLG*
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mRNA from alignment at L-elsbetiae_contig2113:2883..4402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2113.6436.1 ID=mRNA_L-elsbetiae_contig2113.6436.1|Name=mRNA_L-elsbetiae_contig2113.6436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1520bp|location=Sequence derived from alignment at L-elsbetiae_contig2113:2883..4402+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTCCTGATGGTGGGACAGAGCGTCGTCCGGCTCGTCAAGGCCGCCCA
GCGGTACGGACCAGTCGTCATCGTCACGGAATCGCACGAGCGCTGGGTGC
GGGGCACGGCCGCGCTCCTCCTCCCCGGGGGCTCCGCGGCTGCGTGCCTC
GAGGACGTGGAGATCGTGAGCTCGAAGGAACGGTTCGAGGGCGACTTCCC
CAACCAGCCCGCATGCTGGCAGATCGCCGCGTTCAGCTACGTCACCAATC
GCCACTTGCTGTCGCCCGCCGCGGTGGCCCGGGTTAGACGTGCCAACGCT
ACCGCTTCCGCTGCTGCTGCTGCTGTTGCTGCGAGCGGGCCAGGGGGGGG
GTCTGCGGAGGGCGGAAGCAGCGGAGGTAGAGGGGAGGCGTCAGCAGCAG
GGAATTCGAGTGGGGGACAGGCTTTGGGTCGAAACCGTGACGGCAGTGGC
GGCGGCAGCAGCAGCAATGGTACTAGTGCTAGTACAAGCGGTGGCGGTGG
TGATGGTGGGGCGTTGGCGGGTGGCGCTGGAATCCTGATGGCGGTCGCGA
CGTCCTCGCGTGCGGCGGAGGACAAGGCGGCGGCGCTGACCCTGAGGGAG
CACCACCCCACCATCGCCTCCAAGACGGTGTCCCTCATGGAGGCACCGAC
GCCGCTGGAGCTGAAGAATCAGCTCGACCTCCTCTCGGGCAAGCTCGAGC
TCATGTTCGGGCACGCCTCGCCACCGCAACCACCACTGCCGCCGCCGACC
ACCCTGCCGCCGCCGCCGCCGCCGTCGAAAACACCCGCACCGTCCGTGTC
GCCTTCGGCATCAAGCTGCTCGACCTCCGTTGCCACGCCAGAGCCTCGGC
GGTACGAGGAGGAGGAGGAGGGGGGGGGCTCCGATGGATCCCCGATGTGG
GACCTTAGCGGTTCTTCTTCCTCGTGCCCCTCGTCCCCCGCCGCGCCTGC
AACCCCTCGGCGTCACCCGGCCGCCGCCGCTGCCGCCGCCGCTGCTGCCG
CCGCCGCCGGAGGCAAGAAGCCGGCGCAGCGCCGAGAAGCGCGCTTCCCG
GGCTACAACGGCGGCGAGGACGAGGAGGAAGCGGGCGGCGACCACGACAA
CGACGGCGACGATGACGATGATGATGAGGACTACCTGACCGCGACGTGCT
CCGCATCCACCATGAGCAGCGGCAGCAGCACCGCGTCCACCAGGGCCGCC
TGGGCGTCGCTCCCCCCCGCGCTGCACCGCGAGGCTTCTTCTCCATCTTC
TTCTTCTTCCACGCCCTTCCCGCGCCTCTGGCCGCCCTCGCCGCCCTCGC
TGCTCTCGCCGCTCCGGGGCCTGGGCTAGGAGACGGACCCGCACTCGCCG
CCGCCGCCCTCGACCCGTCGGCGCAAGCCCGGGGCTCTCGTCGGGGGGAG
CGTCCAAAAGTAGATGGATGCCCCTCGGTGGATGACTCGGTAGTAGCAGA
GTTGGCGAATGTGTACGTTGCTGGCTGGCTTGATTCGGCCGCCTTACTGC
TGGTTGCCCGCCCGCCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2113:2883..4402+

>mRNA_L-elsbetiae_contig2113.6436.1 ID=mRNA_L-elsbetiae_contig2113.6436.1|Name=mRNA_L-elsbetiae_contig2113.6436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2640bp|location=Sequence derived from alignment at L-elsbetiae_contig2113:2883..4402+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGACAGAGCGTCGTCCGGCTCGTCAAGGCCGCCCAGCGGTACGG
ACCAGTCGTCATCGTCACGGAATCGCACGAGCGCTGGGTGCGGGGCACGG
CCGCGCTCCTCCTCCCCGGGGGCTCCGCGGCTGCGTGCCTCGAGGACGTG
GAGATCGTGAGCTCGAAGGAACGGTTCGAGGGCGACTTCCCCAACCAGCC
CGCATGCTGGCAGATCGCCGCGTTCAGCTACGTCACCAATCGCCACTTGC
TGTCGCCCGCCGCGGTGGCCCGGGTTAGACGTGCCAACGCTACCGCTTCC
GCTGCTGCTGCTGCTGTTGCTGCGAGCGGGCCAGGGGGGGGGTCTGCGGA
GGGCGGAAGCAGCGGAGGTAGAGGGGAGGCGTCAGCAGCAGGGAATTCGA
GTGGGGGACAGGCTTTGGGTCGAAACCGTGACGGCAGTGGCGGCGGCAGC
AGCAGCAATGGTACTAGTGCTAGTACAAGCGGTGGCGGTGGTGATGGTGG
GGCGTTGGCGGGTGGCGCTGGAATCCTGATGGCGGTCGCGACGTCCTCGC
GTGCGGCGGAGGACAAGGCGGCGGCGCTGACCCTGAGGGAGCACCACCCC
ACCATCGCCTCCAAGACGGTGTCCCTCATGGAGGCACCGACGCCGCTGGA
GCTGAAGAATCAGCTCGACCTCCTCTCGGGCAAGCTCGAGCTCATGTTCG
GGCACGCCTCGCCACCGCAACCACCACTGCCGCCGCCGACCACCCTGCCG
CCGCCGCCGCCGCCGTCGAAAACACCCGCACCGTCCGTGTCGCCTTCGGC
ATCAAGCTGCTCGACCTCCGTTGCCACGCCAGAGCCTCGGCGGTACGAGG
AGGAGGAGGAGGGGGGGGGCTCCGATGGATCCCCGATGTGGGACCTTAGC
GGTTCTTCTTCCTCGTGCCCCTCGTCCCCCGCCGCGCCTGCAACCCCTCG
GCGTCACCCGGCCGCCGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCCG
GAGGCAAGAAGCCGGCGCAGCGCCGAGAAGCGCGCTTCCCGGGCTACAAC
GGCGGCGAGGACGAGGAGGAAGCGGGCGGCGACCACGACAACGACGGCGA
CGATGACGATGATGATGAGGACTACCTGACCGCGACGTGCTCCGCATCCA
CCATGAGCAGCGGCAGCAGCACCGCGTCCACCAGGGCCGCCTGGGCGTCG
CTCCCCCCCGCGCTGCACCGCGAGGCTTCTTCTCCATCTTCTTCTTCTTC
CACGCCCTTCCCGCGCCTCTGGCCGCCCTCGCCGCCCTCGCTGCTCTCGC
CGCTCCGGGGCCTGGGCTAGATGGTGGGACAGAGCGTCGTCCGGCTCGTC
AAGGCCGCCCAGCGGTACGGACCAGTCGTCATCGTCACGGAATCGCACGA
GCGCTGGGTGCGGGGCACGGCCGCGCTCCTCCTCCCCGGGGGCTCCGCGG
CTGCGTGCCTCGAGGACGTGGAGATCGTGAGCTCGAAGGAACGGTTCGAG
GGCGACTTCCCCAACCAGCCCGCATGCTGGCAGATCGCCGCGTTCAGCTA
CGTCACCAATCGCCACTTGCTGTCGCCCGCCGCGGTGGCCCGGGTTAGAC
GTGCCAACGCTACCGCTTCCGCTGCTGCTGCTGCTGTTGCTGCGAGCGGG
CCAGGGGGGGGGTCTGCGGAGGGCGGAAGCAGCGGAGGTAGAGGGGAGGC
GTCAGCAGCAGGGAATTCGAGTGGGGGACAGGCTTTGGGTCGAAACCGTG
ACGGCAGTGGCGGCGGCAGCAGCAGCAATGGTACTAGTGCTAGTACAAGC
GGTGGCGGTGGTGATGGTGGGGCGTTGGCGGGTGGCGCTGGAATCCTGAT
GGCGGTCGCGACGTCCTCGCGTGCGGCGGAGGACAAGGCGGCGGCGCTGA
CCCTGAGGGAGCACCACCCCACCATCGCCTCCAAGACGGTGTCCCTCATG
GAGGCACCGACGCCGCTGGAGCTGAAGAATCAGCTCGACCTCCTCTCGGG
CAAGCTCGAGCTCATGTTCGGGCACGCCTCGCCACCGCAACCACCACTGC
CGCCGCCGACCACCCTGCCGCCGCCGCCGCCGCCGTCGAAAACACCCGCA
CCGTCCGTGTCGCCTTCGGCATCAAGCTGCTCGACCTCCGTTGCCACGCC
AGAGCCTCGGCGGTACGAGGAGGAGGAGGAGGGGGGGGGCTCCGATGGAT
CCCCGATGTGGGACCTTAGCGGTTCTTCTTCCTCGTGCCCCTCGTCCCCC
GCCGCGCCTGCAACCCCTCGGCGTCACCCGGCCGCCGCCGCTGCCGCCGC
CGCTGCTGCCGCCGCCGCCGGAGGCAAGAAGCCGGCGCAGCGCCGAGAAG
CGCGCTTCCCGGGCTACAACGGCGGCGAGGACGAGGAGGAAGCGGGCGGC
GACCACGACAACGACGGCGACGATGACGATGATGATGAGGACTACCTGAC
CGCGACGTGCTCCGCATCCACCATGAGCAGCGGCAGCAGCACCGCGTCCA
CCAGGGCCGCCTGGGCGTCGCTCCCCCCCGCGCTGCACCGCGAGGCTTCT
TCTCCATCTTCTTCTTCTTCCACGCCCTTCCCGCGCCTCTGGCCGCCCTC
GCCGCCCTCGCTGCTCTCGCCGCTCCGGGGCCTGGGCTAG
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