mRNA_L-elsbetiae_contig21122.6434.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21122.6434.1
Unique NamemRNA_L-elsbetiae_contig21122.6434.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21122.6434.1 vs. uniprot
Match: A0A6H5KRZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.630e-18
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:   48 EENSSSLLQSLEKEVVALRQSE-------SGLIAELQRRCDKMIELEVHLDEQRERADRLQRERAEEDEALSGELRDIIATVALDS 284
            E ++ SLLQSLEKEV+ LR+S        + L+AELQRRCDK+IELEV+LD++R RADRL RER EE+EALSGELRDI+ATV + S
Sbjct:   20 ENSNHSLLQSLEKEVLLLRKSRDEQEETTASLLAELQRRCDKVIELEVNLDQERARADRLARERMEEEEALSGELRDIMATVTVGS 105
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BLAST of mRNA_L-elsbetiae_contig21122.6434.1 vs. uniprot
Match: D7FLV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.180e-17
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:   66 LLQSLEKEVVALRQSE-------SGLIAELQRRCDKMIELEVHLDEQRERADRLQRERAEEDEALSGELRDIIATVALDS 284
            LLQSLE EV++LR+S        + L+AELQRRCDK+IELEV+LD++R RADRL RER EE+EALSGELRDI+ATV + S
Sbjct:   23 LLQSLETEVLSLRKSRDEQEETTASLLAELQRRCDKVIELEVNLDQERARADRLARERTEEEEALSGELRDIMATVTVGS 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21122.6434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRZ3_9PHAE4.630e-1865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV6_ECTSI2.180e-1766.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21122contigL-elsbetiae_contig21122:501..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size586
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21122.6434.1prot_L-elsbetiae_contig21122.6434.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21122 503..1790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.4385471-UTR-L-elsbetiae_contig21122:500..5021622815866.4385471-UTR-L-elsbetiae_contig21122:500..502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21122 501..502 +
1691683155.4314399-UTR-L-elsbetiae_contig21122:500..5021691683155.4314399-UTR-L-elsbetiae_contig21122:500..502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21122 501..502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.4488227-CDS-L-elsbetiae_contig21122:502..6671622815866.4488227-CDS-L-elsbetiae_contig21122:502..667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21122 503..667 +
1691683155.443915-CDS-L-elsbetiae_contig21122:502..6671691683155.443915-CDS-L-elsbetiae_contig21122:502..667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21122 503..667 +
1622815866.460905-CDS-L-elsbetiae_contig21122:1373..17901622815866.460905-CDS-L-elsbetiae_contig21122:1373..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21122 1374..1790 +
1691683155.4533434-CDS-L-elsbetiae_contig21122:1373..17901691683155.4533434-CDS-L-elsbetiae_contig21122:1373..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21122 1374..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21122.6434.1

>prot_L-elsbetiae_contig21122.6434.1 ID=prot_L-elsbetiae_contig21122.6434.1|Name=mRNA_L-elsbetiae_contig21122.6434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MMGSDEAMMGSDDVREENSSSLLQSLEKEVVALRQSESGLIAELQRRCDK
MIELEVHLDEQRERADRLQRERAEEDEALSGELRDIIATVALDSASSGSS
SSLNLAAAAAAAAVAAASSDSAAVDVAAEPTDGAAATTTAGEPTGRTGAS
GATGEPAERNGAAAGATEEPTEQEPTREGPVPAASGGGDGGAAG
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mRNA from alignment at L-elsbetiae_contig21122:501..1790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21122.6434.1 ID=mRNA_L-elsbetiae_contig21122.6434.1|Name=mRNA_L-elsbetiae_contig21122.6434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig21122:501..1790+ (Laminarionema elsbetiae ELsaHSoW15)
CCATGATGGGCTCGGACGAAGCCATGATGGGCTCGGACGATGTGAGGGAA
GAGAATAGCAGCTCTCTACTCCAGTCGCTGGAAAAGGAGGTTGTGGCGTT
GCGCCAGTCCGAGTCCGGCTTGATCGCTGAGCTCCAACGCCGATGCGACA
AGATGATCGAGCTCGAGGTAAACTGGCTGGGTGCGATAGAGGACCACACG
GGCAAGCTTGCTGTCGAGCGAAGTTTTTGTAGAGTTTGAGATGAATCAGT
CCAAGCTTACAGAATGGAATGCATGACTACACTGCATGTCATCGAACTAC
CTACGAGACAATGGCAGTTAAGGTGCGGTGTAATCAACCGTTCCGATCTC
TCCATCCAGTACCTCTCAATGTCCGTACTAATCCAACACTTGATGCGGTC
AATTCCTGTGGTCACAGGCTAATTTATACCTAAGAAAAGGTTATACTTGT
AGATAAGGTACATGGTGGCGATTTGATTGCAGGCACAATAGGCTTCCAAA
GGCTCGTGTCCAGATCAGAAATCGCGCTGGCTGGACAAAAAGCACCCACT
TGGCCGGATGGCCGTAGCTTAACTCGGGTCCCATCGAAAGCAAATACACT
CCATAATTGTCCAGACCAATAGCGCGCAGCATCTCAAAAAGAGTATAGGT
AATGTCTGTGTGCACACAAATAGTTGCGCAACATCTCCGAACAGTAGTTG
CAGTACAAGTACTTGGTATATCTAAGTAGGTGTTGACCAGAGGCCAAAAA
AAGAGTAGATCAAACTTACGGCTGATGAGAAGCGCCTCAAGCACGAGATC
TGCGGAAAAGCACCACGCTCACGAGGAACGTTATACGCGACAACCGCTCC
CATTGCTTGGGGGGGAAGAGTAGGTTCACCTCGACGAGCAGAGGGAACGC
GCCGACCGCCTGCAGCGGGAGAGGGCCGAGGAGGACGAAGCGCTCTCCGG
CGAGCTCCGAGACATCATCGCCACCGTCGCCCTGGACTCCGCCAGCAGTG
GCAGCAGCAGCAGCCTAAATCTGGCGGCGGCCGCGGCCGCGGCCGCAGTC
GCCGCCGCTTCTTCCGATTCCGCGGCAGTCGACGTGGCGGCGGAACCGAC
TGACGGAGCGGCAGCGACGACCACGGCGGGAGAGCCCACAGGACGAACCG
GGGCATCGGGCGCGACGGGAGAGCCGGCCGAACGAAACGGAGCGGCGGCG
GGTGCGACGGAAGAACCGACGGAACAGGAACCAACGAGGGAGGGGCCGGT
GCCGGCGGCATCAGGCGGAGGCGATGGAGGCGCTGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21122:501..1790+

>mRNA_L-elsbetiae_contig21122.6434.1 ID=mRNA_L-elsbetiae_contig21122.6434.1|Name=mRNA_L-elsbetiae_contig21122.6434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig21122:501..1790+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGCTCGGACGAAGCCATGATGGGCTCGGACGATGTGAGGGAAGA
GAATAGCAGCTCTCTACTCCAGTCGCTGGAAAAGGAGGTTGTGGCGTTGC
GCCAGTCCGAGTCCGGCTTGATCGCTGAGCTCCAACGCCGATGCGACAAG
ATGATCGAGCTCGAGATGATGGGCTCGGACGAAGCCATGATGGGCTCGGA
CGATGTGAGGGAAGAGAATAGCAGCTCTCTACTCCAGTCGCTGGAAAAGG
AGGTTGTGGCGTTGCGCCAGTCCGAGTCCGGCTTGATCGCTGAGCTCCAA
CGCCGATGCGACAAGATGATCGAGCTCGAGGTTCACCTCGACGAGCAGAG
GGAACGCGCCGACCGCCTGCAGCGGGAGAGGGCCGAGGAGGACGAAGCGC
TCTCCGGCGAGCTCCGAGACATCATCGCCACCGTCGCCCTGGACTCCGCC
AGCAGTGGCAGCAGCAGCAGCCTAAATCTGGCGGCGGCCGCGGCCGCGGC
CGCAGTCGCCGCCGCTTCTTCCGATTCCGCGGCAGTCGACGTGGCGGCGG
AACCGACTGACGGAGCGGCAGCGACGACCACGGCGGGAGAGCCCACAGGA
CGAACCGGGGCATCGGGCGCGACGGGAGAGCCGGCCGAACGAAACGGAGC
GGCGGCGGGTGCGACGGAAGAACCGACGGAACAGGAACCAACGAGGGAGG
GGCCGGTGCCGGCGGCATCAGGCGGAGGCGATGGAGGCGCTGCGGGGGTT
CACCTCGACGAGCAGAGGGAACGCGCCGACCGCCTGCAGCGGGAGAGGGC
CGAGGAGGACGAAGCGCTCTCCGGCGAGCTCCGAGACATCATCGCCACCG
TCGCCCTGGACTCCGCCAGCAGTGGCAGCAGCAGCAGCCTAAATCTGGCG
GCGGCCGCGGCCGCGGCCGCAGTCGCCGCCGCTTCTTCCGATTCCGCGGC
AGTCGACGTGGCGGCGGAACCGACTGACGGAGCGGCAGCGACGACCACGG
CGGGAGAGCCCACAGGACGAACCGGGGCATCGGGCGCGACGGGAGAGCCG
GCCGAACGAAACGGAGCGGCGGCGGGTGCGACGGAAGAACCGACGGAACA
GGAACCAACGAGGGAGGGGCCGGTGCCGGCGGCATCAGGCGGAGGCGATG
GAGGCGCTGCGGGG
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