mRNA_L-elsbetiae_contig21120.6433.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21120.6433.1
Unique NamemRNA_L-elsbetiae_contig21120.6433.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.420e-16
Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:   19 SVQADPIEYGCSCDD-GYISEDSVGSPSSVRKQVLIGFFIAMAMLGVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLIYSA 264
            S Q D I Y CSCDD G+ S DS G+PS V ++ L+  +I +A+ G  TVGFL W A KQ +L   AQATRRA LRLRLI+SA
Sbjct:   19 SEQDDLIGYECSCDDDGFTSMDSFGNPSCVLRRALVAGYIIIAVCGSSTVGFLAWNALKQSHLPRTAQATRRAMLRLRLIWSA 101
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BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Match: D7FP23_ECTSI (DUF305 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP23_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.220e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   43 YGCSCDDGYISEDSVGSPSSVRKQVLIGFFIAMAMLGVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLI 255
            YGC C+ G +  DS+G+PS VRK  LIG +  +  +  + V F+LW A     L  AAQATRRA+LR+RL+
Sbjct:  372 YGCWCNPGLVETDSLGNPSCVRKPSLIGLYAVVGAIAGLAVAFVLWKARAHWLLPEAAQATRRARLRMRLV 442
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21120.6433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN9_ECTSI8.420e-1656.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FP23_ECTSI7.220e-1147.89DUF305 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21120contigL-elsbetiae_contig21120:1360..2021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog2880.D7FP23
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.395215-CDS-L-elsbetiae_contig21120:1359..14971622815866.395215-CDS-L-elsbetiae_contig21120:1359..1497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21120 1360..1497 +
1691683155.4024162-CDS-L-elsbetiae_contig21120:1359..14971691683155.4024162-CDS-L-elsbetiae_contig21120:1359..1497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21120 1360..1497 +
1622815866.4094222-CDS-L-elsbetiae_contig21120:1733..20211622815866.4094222-CDS-L-elsbetiae_contig21120:1733..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21120 1734..2021 +
1691683155.4205-CDS-L-elsbetiae_contig21120:1733..20211691683155.4205-CDS-L-elsbetiae_contig21120:1733..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21120 1734..2021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21120.6433.1prot_L-elsbetiae_contig21120.6433.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21120 1360..2021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21120.6433.1

>prot_L-elsbetiae_contig21120.6433.1 ID=prot_L-elsbetiae_contig21120.6433.1|Name=mRNA_L-elsbetiae_contig21120.6433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
VESFCVSVQADPIEYGCSCDDGYISEDSVGSPSSVRKQVLIGFFIAMAML
GVVTVGFLLWTATKQRYLSTAAQATRRAKLRLRLIYSARCGGLAVTPGCA
RLLKSCMFRDHRRILARSESLHISILGSWHKGCGKAAGGSK*
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mRNA from alignment at L-elsbetiae_contig21120:1360..2021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21120.6433.1 ID=mRNA_L-elsbetiae_contig21120.6433.1|Name=mRNA_L-elsbetiae_contig21120.6433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=662bp|location=Sequence derived from alignment at L-elsbetiae_contig21120:1360..2021+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGTCTTTTTGCGTATCAGTCCAGGCCGACCCCATCGAGTACGGATG
CTCTTGCGATGATGGCTACATCTCGGAGGACTCGGTTGGGAGCCCCTCTT
CCGTACGGAAGCAGGTGCTCATCGGTTTTTTCATTGCGGTACGTGGAAAC
TTGCGGCAATATGGGAAGTCGGACGGCCTGAGGAGGAAGATCTGTGCCAT
TTACGGACGACGTAAAGAAGACGGCCCAGCACGCCCTGCCGTTCAGCCAA
TATGGTATATATGTTTTGGACCTAGCACGAAAGCGTAATGGAGGCGGGCC
TATGAAAAAGATCAAGTGCTTCTCGTACCATCCCTTTTTCTCTCTCTTGG
GGATAAATGTATTGCCAAAAGAAGATGGCTATGCTTGGAGTCGTCACCGT
GGGTTTTCTGCTCTGGACTGCGACGAAGCAACGGTATCTGTCAACAGCAG
CCCAAGCCACGAGGAGGGCTAAGCTGCGGCTCCGCTTGATATACTCGGCA
AGGTGCGGTGGGCTTGCAGTAACGCCGGGTTGTGCGCGCTTGTTGAAATC
ATGCATGTTCCGTGATCATCGGAGAATCCTTGCACGTTCGGAATCTCTGC
ACATATCTATATTGGGGTCTTGGCACAAAGGGTGCGGGAAAGCAGCAGGG
GGTTCCAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21120:1360..2021+

>mRNA_L-elsbetiae_contig21120.6433.1 ID=mRNA_L-elsbetiae_contig21120.6433.1|Name=mRNA_L-elsbetiae_contig21120.6433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig21120:1360..2021+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAGTCTTTTTGCGTATCAGTCCAGGCCGACCCCATCGAGTACGGATG
CTCTTGCGATGATGGCTACATCTCGGAGGACTCGGTTGGGAGCCCCTCTT
CCGTACGGAAGCAGGTGCTCATCGGTTTTTTCATTGCGGTCGAGTCTTTT
TGCGTATCAGTCCAGGCCGACCCCATCGAGTACGGATGCTCTTGCGATGA
TGGCTACATCTCGGAGGACTCGGTTGGGAGCCCCTCTTCCGTACGGAAGC
AGGTGCTCATCGGTTTTTTCATTGCGATGGCTATGCTTGGAGTCGTCACC
GTGGGTTTTCTGCTCTGGACTGCGACGAAGCAACGGTATCTGTCAACAGC
AGCCCAAGCCACGAGGAGGGCTAAGCTGCGGCTCCGCTTGATATACTCGG
CAAGGTGCGGTGGGCTTGCAGTAACGCCGGGTTGTGCGCGCTTGTTGAAA
TCATGCATGTTCCGTGATCATCGGAGAATCCTTGCACGTTCGGAATCTCT
GCACATATCTATATTGGGGTCTTGGCACAAAGGGTGCGGGAAAGCAGCAG
GGGGTTCCAAGTGAATGGCTATGCTTGGAGTCGTCACCGTGGGTTTTCTG
CTCTGGACTGCGACGAAGCAACGGTATCTGTCAACAGCAGCCCAAGCCAC
GAGGAGGGCTAAGCTGCGGCTCCGCTTGATATACTCGGCAAGGTGCGGTG
GGCTTGCAGTAACGCCGGGTTGTGCGCGCTTGTTGAAATCATGCATGTTC
CGTGATCATCGGAGAATCCTTGCACGTTCGGAATCTCTGCACATATCTAT
ATTGGGGTCTTGGCACAAAGGGTGCGGGAAAGCAGCAGGGGGTTCCAAGT
GA
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