mRNA_L-elsbetiae_contig2112.6430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6430.1
Unique NamemRNA_L-elsbetiae_contig2112.6430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2112.6430.1 vs. uniprot
Match: D7FH86_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH86_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.350e-9
Identity = 63/195 (32.31%), Postives = 86/195 (44.10%), Query Frame = 1 
Query:  112 GADKLTAAHCCEQLVALSESGXXXXXXXXXXXXXXXXXXXXXXXXXNDHLEAGSSXXXXXXGSGSRGSTCGVDLTLKRKAPSWPGLGLAPPERRGNAERGGEWSKRMRDDSSALERRGPAEPSTLGPPDPLSGVGIIVTGVRRAPREEIEAGITRLGGEIVEVFSEDGGVTNGWRACLLGEAGQ--AGAGGSAEP 690
            G D LTA HCCEQL+ALSESG                            L  G +       +G  GS+   D+ +  K  + P   L P  R  +       S    DD  A     P          PL+GVG+I+ G+   PR+E+EA I  LG E+V++  E GG    W++ LLGE+ +  A +G +AEP
Sbjct:  435 GEDNLTA-HCCEQLLALSESGSGAAACGSDGASASGHCE-------GGDLVTGKASVDRCAENGGNGSSDSDDVDVV-KNDAVPLNHLLPISRASSG------SANAGDDLGATHSSSPPREG------PLAGVGVILAGLGEQPRQEMEAKIRNLGAEVVDILGESGG----WKSWLLGESTRTVANSGSTAEP 604
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BLAST of mRNA_L-elsbetiae_contig2112.6430.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.540e-5
Identity = 58/187 (31.02%), Postives = 79/187 (42.25%), Query Frame = 1 
Query:  118 DKLTAAHCCEQLVALSESGXXXXXXXXXXXXXXXXXXXXXXXXXNDHLEAGS--------SXXXXXXGSGSRGSTCGVDLTLKRKAPSWPGLGLAPPERRGNAERGGEWSKRMRDDSSALERRGPAEPSTLGPPDPLSGVGIIVTGVRRAPREEIEAGITRLGGEIVEVFSEDGGVTNGWRACLLGE 654
            DKLTA HCCEQL+ALSESG                         ++H E G                G+GS  S   VD+      P    L    P  RG++      S    DD  A     P          PL+GVG+I+ G+ +  R+++EA I  LG E+V++     G ++GWR+ LL E
Sbjct:  614 DKLTA-HCCEQLLALSESGSGTAVGGSDVASA------------SNHCEGGDVVTGKGSVDRFAENGGTGSSDSA-NVDVVENDAVP----LNHLLPISRGSSG-----SANADDDLGATLSSSPPREG------PLTGVGVILAGLGQQSRQQMEAKIRNLGAEVVDIL----GKSDGWRSWLLRE 767
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH86_ECTSI6.350e-932.31BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JG92_9PHAE1.540e-531.02BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:4698..5389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.2762635-CDS-L-elsbetiae_contig2112:4697..53871622815866.2762635-CDS-L-elsbetiae_contig2112:4697..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 4698..5387 +
1691683155.354117-CDS-L-elsbetiae_contig2112:4697..53871691683155.354117-CDS-L-elsbetiae_contig2112:4697..5387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 4698..5387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6430.1prot_L-elsbetiae_contig2112.6430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 4698..5387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6430.1

>prot_L-elsbetiae_contig2112.6430.1 ID=prot_L-elsbetiae_contig2112.6430.1|Name=mRNA_L-elsbetiae_contig2112.6430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
AAERETAAARSWPARDAAAGGEGEIDDDPATAGVPWGGADKLTAAHCCEQ
LVALSESGGSCGGGGGGGSSVTGEPGGGSSGGDNDHLEAGSSSCSSSSGS
GSRGSTCGVDLTLKRKAPSWPGLGLAPPERRGNAERGGEWSKRMRDDSSA
LERRGPAEPSTLGPPDPLSGVGIIVTGVRRAPREEIEAGITRLGGEIVEV
FSEDGGVTNGWRACLLGEAGQAGAGGSAEP
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mRNA from alignment at L-elsbetiae_contig2112:4698..5389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6430.1 ID=mRNA_L-elsbetiae_contig2112.6430.1|Name=mRNA_L-elsbetiae_contig2112.6430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=692bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:4698..5389+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGAAAGAGAGACCGCCGCCGCGAGGAGTTGGCCGGCCAGAGACGC
TGCGGCCGGCGGAGAAGGAGAGATTGACGACGACCCCGCCACAGCGGGAG
TACCGTGGGGGGGCGCGGACAAGCTCACGGCGGCGCACTGCTGCGAGCAG
CTTGTCGCGCTGTCCGAGAGCGGCGGTTCGTGCGGTGGTGGCGGCGGCGG
CGGCAGCAGCGTGACCGGCGAACCCGGTGGTGGTAGCAGCGGTGGTGACA
ACGACCACCTCGAGGCCGGAAGCAGCAGCTGCAGCAGCAGCAGCGGCAGC
GGCAGCAGAGGTTCCACCTGCGGGGTCGACCTGACCCTTAAGAGGAAGGC
GCCGTCGTGGCCCGGACTGGGACTGGCGCCTCCTGAGCGGCGGGGCAATG
CGGAACGCGGTGGTGAGTGGTCTAAGAGGATGAGGGACGACTCGTCGGCG
CTGGAGAGGAGGGGCCCCGCAGAACCGTCGACCCTTGGCCCCCCGGACCC
TCTATCTGGTGTGGGTATTATCGTCACCGGCGTGCGAAGGGCCCCACGGG
AGGAGATCGAGGCGGGGATCACCAGGCTGGGAGGAGAGATTGTCGAGGTT
TTCTCCGAGGATGGCGGTGTGACCAACGGTTGGAGGGCATGCCTTCTTGG
AGAAGCGGGGCAGGCTGGGGCAGGGGGCTCAGCAGAACCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:4698..5389+

>mRNA_L-elsbetiae_contig2112.6430.1 ID=mRNA_L-elsbetiae_contig2112.6430.1|Name=mRNA_L-elsbetiae_contig2112.6430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:4698..5389+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGAAAGAGAGACCGCCGCCGCGAGGAGTTGGCCGGCCAGAGACGC
TGCGGCCGGCGGAGAAGGAGAGATTGACGACGACCCCGCCACAGCGGGAG
TACCGTGGGGGGGCGCGGACAAGCTCACGGCGGCGCACTGCTGCGAGCAG
CTTGTCGCGCTGTCCGAGAGCGGCGGTTCGTGCGGTGGTGGCGGCGGCGG
CGGCAGCAGCGTGACCGGCGAACCCGGTGGTGGTAGCAGCGGTGGTGACA
ACGACCACCTCGAGGCCGGAAGCAGCAGCTGCAGCAGCAGCAGCGGCAGC
GGCAGCAGAGGTTCCACCTGCGGGGTCGACCTGACCCTTAAGAGGAAGGC
GCCGTCGTGGCCCGGACTGGGACTGGCGCCTCCTGAGCGGCGGGGCAATG
CGGAACGCGGTGGTGAGTGGTCTAAGAGGATGAGGGACGACTCGTCGGCG
CTGGAGAGGAGGGGCCCCGCAGAACCGTCGACCCTTGGCCCCCCGGACCC
TCTATCTGGTGTGGGTATTATCGTCACCGGCGTGCGAAGGGCCCCACGGG
AGGAGATCGAGGCGGGGATCACCAGGCTGGGAGGAGAGATTGTCGAGGTT
TTCTCCGAGGATGGCGGTGTGACCAACGGTTGGAGGGCATGCCTTCTTGG
AGAAGCGGGGCAGGCTGGGGCAGGGGGCTCAGCAGAACCGGCGGCGGAAA
GAGAGACCGCCGCCGCGAGGAGTTGGCCGGCCAGAGACGCTGCGGCCGGC
GGAGAAGGAGAGATTGACGACGACCCCGCCACAGCGGGAGTACCGTGGGG
GGGCGCGGACAAGCTCACGGCGGCGCACTGCTGCGAGCAGCTTGTCGCGC
TGTCCGAGAGCGGCGGTTCGTGCGGTGGTGGCGGCGGCGGCGGCAGCAGC
GTGACCGGCGAACCCGGTGGTGGTAGCAGCGGTGGTGACAACGACCACCT
CGAGGCCGGAAGCAGCAGCTGCAGCAGCAGCAGCGGCAGCGGCAGCAGAG
GTTCCACCTGCGGGGTCGACCTGACCCTTAAGAGGAAGGCGCCGTCGTGG
CCCGGACTGGGACTGGCGCCTCCTGAGCGGCGGGGCAATGCGGAACGCGG
TGGTGAGTGGTCTAAGAGGATGAGGGACGACTCGTCGGCGCTGGAGAGGA
GGGGCCCCGCAGAACCGTCGACCCTTGGCCCCCCGGACCCTCTATCTGGT
GTGGGTATTATCGTCACCGGCGTGCGAAGGGCCCCACGGGAGGAGATCGA
GGCGGGGATCACCAGGCTGGGAGGAGAGATTGTCGAGGTTTTCTCCGAGG
ATGGCGGTGTGACCAACGGTTGGAGGGCATGCCTTCTTGGAGAAGCGGGG
CAGGCTGGGGCAGGGGGCTCAGCAGAACCG
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