mRNA_L-elsbetiae_contig2112.6429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6429.1
Unique NamemRNA_L-elsbetiae_contig2112.6429.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:3852..4481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.2431386-CDS-L-elsbetiae_contig2112:3851..44811622815866.2431386-CDS-L-elsbetiae_contig2112:3851..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 3852..4481 +
1691683155.342345-CDS-L-elsbetiae_contig2112:3851..44811691683155.342345-CDS-L-elsbetiae_contig2112:3851..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 3852..4481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6429.1prot_L-elsbetiae_contig2112.6429.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 3852..4481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6429.1

>prot_L-elsbetiae_contig2112.6429.1 ID=prot_L-elsbetiae_contig2112.6429.1|Name=mRNA_L-elsbetiae_contig2112.6429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
ATAAATGEATGPPTDGSGCCCASTKKPSADETAGGSRVTPCPDETKPGLL
GKIDRRHGRELQAEEEEEEEGSNQVPVPVSKKARADGAVRKSSASPCPAS
EVQIERGPAAKTQAGGHDRGGTAGLLLPACAPTAAPDVPDAAAAAAVDVV
GGGTSLTALFADPHVNARKRPGGGCCGGGGGPVEGLAQVDGEEEEEKQAE
SNKPSVINPE
back to top

mRNA from alignment at L-elsbetiae_contig2112:3852..4481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6429.1 ID=mRNA_L-elsbetiae_contig2112.6429.1|Name=mRNA_L-elsbetiae_contig2112.6429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:3852..4481+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACGGCAGCGGCTACTGGCGAAGCCACGGGCCCCCCTACGGATGGGTC
CGGGTGTTGCTGCGCGAGCACCAAGAAACCCTCCGCGGATGAAACCGCCG
GTGGGAGCCGCGTAACGCCTTGCCCGGACGAGACGAAGCCTGGTCTGCTG
GGTAAGATCGATCGCAGGCATGGCAGGGAGCTCCAGGCGGAGGAGGAAGA
GGAGGAGGAAGGATCGAACCAGGTGCCGGTACCCGTATCCAAAAAGGCCC
GTGCGGATGGAGCTGTCCGTAAGAGCAGCGCGAGTCCCTGTCCGGCGTCT
GAGGTCCAAATCGAGAGGGGCCCCGCCGCGAAGACCCAGGCGGGTGGACA
CGATCGCGGAGGCACGGCCGGGCTGCTGCTGCCGGCGTGTGCGCCCACAG
CGGCGCCCGATGTCCCTGACGCCGCCGCCGCCGCCGCCGTGGACGTCGTC
GGCGGCGGGACTTCTCTGACGGCGTTGTTCGCCGACCCCCACGTAAATGC
CAGAAAGCGACCCGGTGGTGGATGCTGCGGCGGTGGTGGCGGTCCCGTGG
AAGGTCTAGCGCAAGTTGATGGTGAGGAGGAGGAGGAGAAGCAGGCGGAG
AGTAATAAACCGTCTGTCATCAATCCTGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:3852..4481+

>mRNA_L-elsbetiae_contig2112.6429.1 ID=mRNA_L-elsbetiae_contig2112.6429.1|Name=mRNA_L-elsbetiae_contig2112.6429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:3852..4481+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACGGCAGCGGCTACTGGCGAAGCCACGGGCCCCCCTACGGATGGGTC
CGGGTGTTGCTGCGCGAGCACCAAGAAACCCTCCGCGGATGAAACCGCCG
GTGGGAGCCGCGTAACGCCTTGCCCGGACGAGACGAAGCCTGGTCTGCTG
GGTAAGATCGATCGCAGGCATGGCAGGGAGCTCCAGGCGGAGGAGGAAGA
GGAGGAGGAAGGATCGAACCAGGTGCCGGTACCCGTATCCAAAAAGGCCC
GTGCGGATGGAGCTGTCCGTAAGAGCAGCGCGAGTCCCTGTCCGGCGTCT
GAGGTCCAAATCGAGAGGGGCCCCGCCGCGAAGACCCAGGCGGGTGGACA
CGATCGCGGAGGCACGGCCGGGCTGCTGCTGCCGGCGTGTGCGCCCACAG
CGGCGCCCGATGTCCCTGACGCCGCCGCCGCCGCCGCCGTGGACGTCGTC
GGCGGCGGGACTTCTCTGACGGCGTTGTTCGCCGACCCCCACGTAAATGC
CAGAAAGCGACCCGGTGGTGGATGCTGCGGCGGTGGTGGCGGTCCCGTGG
AAGGTCTAGCGCAAGTTGATGGTGAGGAGGAGGAGGAGAAGCAGGCGGAG
AGTAATAAACCGTCTGTCATCAATCCTGAGGCGACGGCAGCGGCTACTGG
CGAAGCCACGGGCCCCCCTACGGATGGGTCCGGGTGTTGCTGCGCGAGCA
CCAAGAAACCCTCCGCGGATGAAACCGCCGGTGGGAGCCGCGTAACGCCT
TGCCCGGACGAGACGAAGCCTGGTCTGCTGGGTAAGATCGATCGCAGGCA
TGGCAGGGAGCTCCAGGCGGAGGAGGAAGAGGAGGAGGAAGGATCGAACC
AGGTGCCGGTACCCGTATCCAAAAAGGCCCGTGCGGATGGAGCTGTCCGT
AAGAGCAGCGCGAGTCCCTGTCCGGCGTCTGAGGTCCAAATCGAGAGGGG
CCCCGCCGCGAAGACCCAGGCGGGTGGACACGATCGCGGAGGCACGGCCG
GGCTGCTGCTGCCGGCGTGTGCGCCCACAGCGGCGCCCGATGTCCCTGAC
GCCGCCGCCGCCGCCGCCGTGGACGTCGTCGGCGGCGGGACTTCTCTGAC
GGCGTTGTTCGCCGACCCCCACGTAAATGCCAGAAAGCGACCCGGTGGTG
GATGCTGCGGCGGTGGTGGCGGTCCCGTGGAAGGTCTAGCGCAAGTTGAT
GGTGAGGAGGAGGAGGAGAAGCAGGCGGAGAGTAATAAACCGTCTGTCAT
CAATCCTGAG
back to top