mRNA_L-elsbetiae_contig2112.6427.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6427.1
Unique NamemRNA_L-elsbetiae_contig2112.6427.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:2826..3248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.1559458-CDS-L-elsbetiae_contig2112:2825..32481622815866.1559458-CDS-L-elsbetiae_contig2112:2825..3248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 2826..3248 +
1691683155.3188045-CDS-L-elsbetiae_contig2112:2825..32481691683155.3188045-CDS-L-elsbetiae_contig2112:2825..3248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 2826..3248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6427.1prot_L-elsbetiae_contig2112.6427.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 2826..3248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6427.1

>prot_L-elsbetiae_contig2112.6427.1 ID=prot_L-elsbetiae_contig2112.6427.1|Name=mRNA_L-elsbetiae_contig2112.6427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
TKYNSLVKGAAMASVGRRGPVDASPVTSAAAEAPAGGGQATNSSNPWAKT
ARPTKEKAAVRAATTFTAVGGTVKRPSTGVGHAAKVATPALKAADTWTKS
ERPAAEKPAVRTAKPSTTALGDPPAHHSAIVRAAAAAAERA
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mRNA from alignment at L-elsbetiae_contig2112:2826..3248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6427.1 ID=mRNA_L-elsbetiae_contig2112.6427.1|Name=mRNA_L-elsbetiae_contig2112.6427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:2826..3248+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGTACAACTCCCTCGTCAAGGGCGCCGCCATGGCGTCGGTGGGAAG
ACGGGGTCCCGTGGATGCAAGCCCGGTCACGAGCGCGGCTGCTGAAGCAC
CGGCTGGAGGTGGGCAGGCGACGAACAGCAGCAACCCCTGGGCGAAGACC
GCGCGCCCCACGAAAGAGAAAGCGGCCGTACGAGCGGCGACGACATTCAC
AGCCGTTGGGGGGACCGTGAAGAGACCATCCACTGGGGTAGGGCATGCGG
CGAAGGTGGCAACCCCTGCTCTAAAAGCGGCGGATACCTGGACGAAAAGC
GAGCGCCCTGCGGCGGAAAAACCGGCCGTACGAACGGCGAAGCCATCGAC
GACCGCCCTCGGGGACCCCCCCGCACACCACAGCGCGATCGTGAGGGCGG
CGGCCGCGGCGGCCGAGCGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:2826..3248+

>mRNA_L-elsbetiae_contig2112.6427.1 ID=mRNA_L-elsbetiae_contig2112.6427.1|Name=mRNA_L-elsbetiae_contig2112.6427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:2826..3248+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGTACAACTCCCTCGTCAAGGGCGCCGCCATGGCGTCGGTGGGAAG
ACGGGGTCCCGTGGATGCAAGCCCGGTCACGAGCGCGGCTGCTGAAGCAC
CGGCTGGAGGTGGGCAGGCGACGAACAGCAGCAACCCCTGGGCGAAGACC
GCGCGCCCCACGAAAGAGAAAGCGGCCGTACGAGCGGCGACGACATTCAC
AGCCGTTGGGGGGACCGTGAAGAGACCATCCACTGGGGTAGGGCATGCGG
CGAAGGTGGCAACCCCTGCTCTAAAAGCGGCGGATACCTGGACGAAAAGC
GAGCGCCCTGCGGCGGAAAAACCGGCCGTACGAACGGCGAAGCCATCGAC
GACCGCCCTCGGGGACCCCCCCGCACACCACAGCGCGATCGTGAGGGCGG
CGGCCGCGGCGGCCGAGCGAGCGACGAAGTACAACTCCCTCGTCAAGGGC
GCCGCCATGGCGTCGGTGGGAAGACGGGGTCCCGTGGATGCAAGCCCGGT
CACGAGCGCGGCTGCTGAAGCACCGGCTGGAGGTGGGCAGGCGACGAACA
GCAGCAACCCCTGGGCGAAGACCGCGCGCCCCACGAAAGAGAAAGCGGCC
GTACGAGCGGCGACGACATTCACAGCCGTTGGGGGGACCGTGAAGAGACC
ATCCACTGGGGTAGGGCATGCGGCGAAGGTGGCAACCCCTGCTCTAAAAG
CGGCGGATACCTGGACGAAAAGCGAGCGCCCTGCGGCGGAAAAACCGGCC
GTACGAACGGCGAAGCCATCGACGACCGCCCTCGGGGACCCCCCCGCACA
CCACAGCGCGATCGTGAGGGCGGCGGCCGCGGCGGCCGAGCGAGCG
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