mRNA_L-elsbetiae_contig21119.6425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21119.6425.1
Unique NamemRNA_L-elsbetiae_contig21119.6425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Match: E6ZEQ5_ECTSI (Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.390e-14
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 1 
Query:   19 KHKSLFQYLIKKKAYIGP----PLPYLDCSLYPFLHGKINHFSIYDLQQSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCVWDIRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNFNDKNLFKWHIYLLVQAIIRG 510
            KH  LF   I    Y+ P        +  +L+PFL GK N +S YDL++SL+ +   +++++ +IS  GKILF+G              I+        I  S + DL+++ +V  + L EA +K + +VG G      + YP +LN     L  W    +  + ++G
Sbjct:    5 KHSRLFSLFIGSSGYLVPFPRNEYSQISKTLHPFLLGKRNIYSFYDLEKSLYGIRATIEVLKNIISSEGKILFIGDDVSMQSRFGQDSNINFLKWERGSITKSKDADLVLLTSVEKENLVEAHRKCLLLVGVGSSTMSRISYPFNLNIESPFLSDWFFGTVYTSCVQG 172
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BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Match: A0A8F0FDE8_9PHAE (Ribosomal protein S2 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDE8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-11
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 1 
Query:   31 LFQYLIKKKAYIGP-PLPY---LDCSLYPFLHGKINHFSIYDLQQSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCV-WD---IRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNFNDKNLFKWHIYLLVQAIIRG 510
            L  + I    Y+ P PL     +  +++PFL GK + +S Y+L++SL+ +   L++++ +I++ GKI FV     F K +   P I+    C+ W+   +  S + DL  + ++  + L EA +KG+ +VG G      + YP +LN     L  W    +  + +RG
Sbjct:    9 LLSFFIGSSGYLVPRPLNENIKISKTMHPFLLGKRDIYSFYNLEKSLYGIRATLEVLKNIIANEGKITFVSNSPIFKKCLSLDPQIT----CIRWERSYLAKSKDADLFFLSDIQKENLVEAHRKGLLLVGVGSPTMSKIAYPFNLNVRSPLLADWFFSAIYTSCVRG 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21119.6425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
E6ZEQ5_ECTSI4.390e-1428.57Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosu... [more]
A0A8F0FDE8_9PHAE1.240e-1128.57Ribosomal protein S2 n=1 Tax=Pseudochorda nagaii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21119contigL-elsbetiae_contig21119:1472..1999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.1
Exons1
Model size528
Cds size528
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.0809698-CDS-L-elsbetiae_contig21119:1471..19991622815866.0809698-CDS-L-elsbetiae_contig21119:1471..1999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21119 1472..1999 -
1691683155.2813065-CDS-L-elsbetiae_contig21119:1471..19991691683155.2813065-CDS-L-elsbetiae_contig21119:1471..1999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21119 1472..1999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21119.6425.1prot_L-elsbetiae_contig21119.6425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21119 1472..1999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21119.6425.1

>prot_L-elsbetiae_contig21119.6425.1 ID=prot_L-elsbetiae_contig21119.6425.1|Name=mRNA_L-elsbetiae_contig21119.6425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MKTKFIKHKSLFQYLIKKKAYIGPPLPYLDCSLYPFLHGKINHFSIYDLQ
QSLFILIQVLKLVEKLISDGGKILFVGPPKKFIKSIHYIPGISVCSKCVW
DIRSSTNIDLIIIYNVNSKILYEAKQKGVPIVGFGGLNFKYVDYPVSLNF
NDKNLFKWHIYLLVQAIIRGFNIRF*
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mRNA from alignment at L-elsbetiae_contig21119:1472..1999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21119.6425.1 ID=mRNA_L-elsbetiae_contig21119.6425.1|Name=mRNA_L-elsbetiae_contig21119.6425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig21119:1472..1999- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAACCAAATTTATTAAACATAAATCTTTATTTCAATATTTGATTAA
AAAAAAAGCTTATATAGGTCCACCTTTACCATATTTAGATTGTTCTTTAT
ATCCATTTTTACATGGTAAAATAAATCATTTTTCTATTTATGACTTACAA
CAAAGTCTATTCATTTTAATCCAAGTTTTAAAGCTAGTTGAAAAATTAAT
TAGTGATGGTGGTAAAATTCTTTTTGTTGGTCCACCTAAAAAGTTTATAA
AATCCATACATTATATTCCAGGTATTTCGGTATGTTCTAAGTGTGTATGG
GATATTCGTTCATCAACTAATATAGATTTAATTATTATTTATAATGTAAA
TTCTAAAATACTCTATGAGGCTAAACAAAAAGGGGTTCCTATTGTAGGAT
TTGGTGGTTTAAATTTTAAATACGTAGATTATCCAGTTAGTTTAAATTTT
AATGATAAAAATTTATTTAAGTGGCATATATACCTATTAGTACAGGCAAT
TATAAGGGGCTTTAATATTCGTTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21119:1472..1999-

>mRNA_L-elsbetiae_contig21119.6425.1 ID=mRNA_L-elsbetiae_contig21119.6425.1|Name=mRNA_L-elsbetiae_contig21119.6425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig21119:1472..1999- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAACCAAATTTATTAAACATAAATCTTTATTTCAATATTTGATTAA
AAAAAAAGCTTATATAGGTCCACCTTTACCATATTTAGATTGTTCTTTAT
ATCCATTTTTACATGGTAAAATAAATCATTTTTCTATTTATGACTTACAA
CAAAGTCTATTCATTTTAATCCAAGTTTTAAAGCTAGTTGAAAAATTAAT
TAGTGATGGTGGTAAAATTCTTTTTGTTGGTCCACCTAAAAAGTTTATAA
AATCCATACATTATATTCCAGGTATTTCGGTATGTTCTAAGTGTGTATGG
GATATTCGTTCATCAACTAATATAGATTTAATTATTATTTATAATGTAAA
TTCTAAAATACTCTATGAGGCTAAACAAAAAGGGGTTCCTATTGTAGGAT
TTGGTGGTTTAAATTTTAAATACGTAGATTATCCAGTTAGTTTAAATTTT
AATGATAAAAATTTATTTAAGTGGCATATATACCTATTAGTACAGGCAAT
TATAAGGGGCTTTAATATTCGTTTTTAAATGAAAACCAAATTTATTAAAC
ATAAATCTTTATTTCAATATTTGATTAAAAAAAAAGCTTATATAGGTCCA
CCTTTACCATATTTAGATTGTTCTTTATATCCATTTTTACATGGTAAAAT
AAATCATTTTTCTATTTATGACTTACAACAAAGTCTATTCATTTTAATCC
AAGTTTTAAAGCTAGTTGAAAAATTAATTAGTGATGGTGGTAAAATTCTT
TTTGTTGGTCCACCTAAAAAGTTTATAAAATCCATACATTATATTCCAGG
TATTTCGGTATGTTCTAAGTGTGTATGGGATATTCGTTCATCAACTAATA
TAGATTTAATTATTATTTATAATGTAAATTCTAAAATACTCTATGAGGCT
AAACAAAAAGGGGTTCCTATTGTAGGATTTGGTGGTTTAAATTTTAAATA
CGTAGATTATCCAGTTAGTTTAAATTTTAATGATAAAAATTTATTTAAGT
GGCATATATACCTATTAGTACAGGCAATTATAAGGGGCTTTAATATTCGT
TTTTAA
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