mRNA_L-elsbetiae_contig2111.6423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2111.6423.1
Unique NamemRNA_L-elsbetiae_contig2111.6423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2111.6423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2111contigL-elsbetiae_contig2111:4284..5267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2111.6423.1prot_L-elsbetiae_contig2111.6423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2111 4302..5267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.8024874-UTR-L-elsbetiae_contig2111:4283..43011622815865.8024874-UTR-L-elsbetiae_contig2111:4283..4301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2111 4284..4301 +
1691683155.127899-UTR-L-elsbetiae_contig2111:4283..43011691683155.127899-UTR-L-elsbetiae_contig2111:4283..4301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2111 4284..4301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.8164759-CDS-L-elsbetiae_contig2111:4301..44421622815865.8164759-CDS-L-elsbetiae_contig2111:4301..4442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2111 4302..4442 +
1691683155.1365209-CDS-L-elsbetiae_contig2111:4301..44421691683155.1365209-CDS-L-elsbetiae_contig2111:4301..4442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2111 4302..4442 +
1622815865.8328993-CDS-L-elsbetiae_contig2111:4907..52671622815865.8328993-CDS-L-elsbetiae_contig2111:4907..5267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2111 4908..5267 +
1691683155.144489-CDS-L-elsbetiae_contig2111:4907..52671691683155.144489-CDS-L-elsbetiae_contig2111:4907..5267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2111 4908..5267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2111.6423.1

>prot_L-elsbetiae_contig2111.6423.1 ID=prot_L-elsbetiae_contig2111.6423.1|Name=mRNA_L-elsbetiae_contig2111.6423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MAGRVDDVWSLMRQGEDVNAWDPMERMTVLQAAVRGCESIAILLLARRGG
KVDSTDDRGLTAMHTAAFKGELGSVNTLIEGGGSVDKMCIVGWTPLLFAA
NSGSCNVMLVLLKRGADVNARSRNGTTPLHQVCHGQLEGIEATAKLLLDW
GADETIEDSKQRTAVDM
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mRNA from alignment at L-elsbetiae_contig2111:4284..5267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2111.6423.1 ID=mRNA_L-elsbetiae_contig2111.6423.1|Name=mRNA_L-elsbetiae_contig2111.6423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig2111:4284..5267+ (Laminarionema elsbetiae ELsaHSoW15)
AATCTATTCCTGGCCATAATGGCCGGACGCGTCGACGATGTCTGGTCTCT
GATGCGACAAGGCGAGGACGTGAATGCGTGGGATCCTATGGAACGAATGA
CTGTTCTACAAGCGGCAGTACGCGGTTGCGAAAGCATCGCAATCCTGCTG
CTAGCGCGGGTGGAGCAAAACCAAATAGGCGCTGCTCGAGGGACGGGACT
CTCCTCCACATCGCTGCTCAAGACGGAAGGATAAGCGTTATCAAGGCCCT
GTTGGCCAATGGCGCGAACAAGGATGCTCGGTGCGACCACGACGGCGAGA
CACCGCTGGCCGACGCCTGCACCTTTGGTAACAAGGAAGTTGCGGAGACG
CTGATGGCCGTTGGGTGCGATATCCACCTGAGAGGAACTGACTCCCACCA
GAACGCTGCGCTCGACAGGACCGCCCAAAACGGGTGAGTACCAAGTACAG
AGGCACCCCCCCCACGAATGCCATGTTTCGCCCACGCTGCTTGCCGCTTT
TCTATGCGGGCCTTCGCGATAAGAACGTACCTCTCACCAACCTCCACTCT
CGCCTTCCGCATCCTCCGTGTATTTTCATCATCCTTTGTGCAGGCATGTC
GAAATAATCCAAGCCATCATCAAGCGTGGGGGGAAAGTGGACTCGACCGA
TGACCGTGGGCTTACTGCGATGCATACGGCCGCCTTCAAAGGCGAGTTGG
GCTCGGTCAATACGCTGATCGAGGGGGGGGGGAGCGTCGACAAGATGTGC
ATTGTCGGGTGGACACCGCTGCTGTTCGCCGCGAACTCCGGCAGCTGCAA
CGTAATGCTGGTCCTCTTGAAGCGCGGAGCGGACGTCAACGCGAGATCTC
GCAACGGAACGACACCACTGCACCAGGTTTGCCACGGTCAGCTAGAAGGC
ATCGAGGCGACAGCGAAGCTCCTCTTGGACTGGGGGGCGGACGAAACGAT
CGAGGACAGCAAGCAGCGTACCGCCGTGGACATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2111:4284..5267+

>mRNA_L-elsbetiae_contig2111.6423.1 ID=mRNA_L-elsbetiae_contig2111.6423.1|Name=mRNA_L-elsbetiae_contig2111.6423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig2111:4284..5267+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGACGCGTCGACGATGTCTGGTCTCTGATGCGACAAGGCGAGGA
CGTGAATGCGTGGGATCCTATGGAACGAATGACTGTTCTACAAGCGGCAG
TACGCGGTTGCGAAAGCATCGCAATCCTGCTGCTAGCGCGGATGGCCGGA
CGCGTCGACGATGTCTGGTCTCTGATGCGACAAGGCGAGGACGTGAATGC
GTGGGATCCTATGGAACGAATGACTGTTCTACAAGCGGCAGTACGCGGTT
GCGAAAGCATCGCAATCCTGCTGCTAGCGCGGCGTGGGGGGAAAGTGGAC
TCGACCGATGACCGTGGGCTTACTGCGATGCATACGGCCGCCTTCAAAGG
CGAGTTGGGCTCGGTCAATACGCTGATCGAGGGGGGGGGGAGCGTCGACA
AGATGTGCATTGTCGGGTGGACACCGCTGCTGTTCGCCGCGAACTCCGGC
AGCTGCAACGTAATGCTGGTCCTCTTGAAGCGCGGAGCGGACGTCAACGC
GAGATCTCGCAACGGAACGACACCACTGCACCAGGTTTGCCACGGTCAGC
TAGAAGGCATCGAGGCGACAGCGAAGCTCCTCTTGGACTGGGGGGCGGAC
GAAACGATCGAGGACAGCAAGCAGCGTACCGCCGTGGACATGCGTGGGGG
GAAAGTGGACTCGACCGATGACCGTGGGCTTACTGCGATGCATACGGCCG
CCTTCAAAGGCGAGTTGGGCTCGGTCAATACGCTGATCGAGGGGGGGGGG
AGCGTCGACAAGATGTGCATTGTCGGGTGGACACCGCTGCTGTTCGCCGC
GAACTCCGGCAGCTGCAACGTAATGCTGGTCCTCTTGAAGCGCGGAGCGG
ACGTCAACGCGAGATCTCGCAACGGAACGACACCACTGCACCAGGTTTGC
CACGGTCAGCTAGAAGGCATCGAGGCGACAGCGAAGCTCCTCTTGGACTG
GGGGGCGGACGAAACGATCGAGGACAGCAAGCAGCGTACCGCCGTGGACA
TG
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