mRNA_L-elsbetiae_contig21103.6421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21103.6421.1
Unique NamemRNA_L-elsbetiae_contig21103.6421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.040e-45
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 DTNKQIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE 249
            DTNK IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHL SQKAAF+E AKADA+FLCSVNVMDYSMLTCIHDSSRP DE
Sbjct:  126 DTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFVEAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDE 208          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.130e-43
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 1
Query:    1 DTNKQIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE 249
            DTNK IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHL SQKAAF+E AKADA+FLCSVNVMDYSMLTCIHDSSRP DE
Sbjct:  382 DTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFVEAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDE 464          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 8.830e-27
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 DTNKQIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHD-SSRPADE 249
            DT K+IH+ YDLKGSSLGR AK GEKVLKDNDL  + GK+HL SQ+ AF++VA+ADA+FL  + +MDYS+LT IHD +++P+DE
Sbjct:  637 DTYKEIHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFLKVARADAEFLARMKIMDYSLLTGIHDRTAKPSDE 720          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.290e-24
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 DTNKQIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFI---EVAKADAKFLCSVNVMDYSMLTCIHD-SSRPADE 249
            DT K+IH+ YDLKGSSLGR AK GEKVLKDNDL  + GK+HL SQ+ AF+   EVA+ DA+FL  + +MDYS+LT IHD +++P DE
Sbjct:  912 DTYKEIHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFLKAREVARGDAEFLARMKIMDYSLLTGIHDRTAKPPDE 998          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.870e-21
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 QIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPAD 246
            +IH KYDLKGS + R+AKEGEKVLKDN+L     K  L SQ+ AF++V ++DA+FL  VNVMDYSM   +H++SRP +
Sbjct:  268 KIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHEASRPPE 345          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A1S3HUG5_LINUN (phosphatidylinositol 5-phosphate 4-kinase type-2 alpha isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HUG5_LINUN)

HSP 1 Score: 67.8 bits (164), Expect = 2.140e-11
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   16 IHSKYDLKGSSLGRSAKEGEKV-----LKDNDLDVKYGKIHLASQ-KAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE 249
            IH KYDLKGS++ R A + EK       KDND      +I +  + K   +E  KAD +FLCS+N+MDYS+L  IHD  R   E
Sbjct:  199 IHKKYDLKGSTVDRQASDKEKAKELPTFKDNDFVSDGIRIDIGEEAKENLMETLKADTEFLCSLNIMDYSLLVGIHDVERGEQE 282          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A0G4I8B7_9ALVE (PIPK domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I8B7_9ALVE)

HSP 1 Score: 67.4 bits (163), Expect = 3.190e-11
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   16 IHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLA-SQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSR 237
            IH +YDLKGS+LGR AKEGE V KD D   +   + L+ + + A  EV + D ++L S N++DYS+L  +HD SR
Sbjct:  506 IHEQYDLKGSTLGRVAKEGESVFKDQDWIGRSRSLKLSEADRRAIAEVHQKDCEWLESKNLLDYSILLGVHDRSR 580          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A813V668_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813V668_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 1.010e-10
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   13 QIHSKYDLKGSSLGRSAKEGEK-----VLKDNDLDVKYGKIHLASQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSR 237
            +IH+KYD+KGS++ RSA + EK      LKDND       I +  QK AF++  K D  FL S ++MDYS+L  IHD  +
Sbjct:  200 RIHTKYDVKGSTVDRSATDKEKSKFSPTLKDNDFINDKRTIEIGEQKKAFMDKLKRDVDFLVSQHLMDYSLLIGIHDLEK 279          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: A0A3M6VEU7_9STRA (PIPK domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEU7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-10
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 DTNKQIHSKYDLKGSSLGR--SAKEGEK----VLKDNDLDVKYGKIHLA-SQKAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE 249
            DT  +IH++YDLKGS +GR  SAKE E+    VLKDNDL  K   + ++ +Q+A F+   + D  FL  + +MDYS+L  +HDS+   D+
Sbjct:  304 DTPLEIHARYDLKGSRIGRHASAKEHERGNVGVLKDNDLLDKGFHLQMSVAQRAMFLIQLRKDVDFLKRMKIMDYSLLVGVHDSNCTRDD 393          
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Match: UPI001604D6D1 (phosphatidylinositol 5-phosphate 4-kinase type-2 alpha isoform X1 n=2 Tax=Folsomia candida TaxID=158441 RepID=UPI001604D6D1)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-10
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   13 QIHSKYDLKGSSLGRSAKEGEK-----VLKDNDLDVKYGKIHLASQ-KAAFIEVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE 249
            +IH KYDLKGS++ R AK+ EK      LKDND     G+I++    K+  +E   AD +FL  +++MDYS+L  +HD  +  +E
Sbjct:  204 KIHRKYDLKGSTVDREAKDKEKGKDLPTLKDNDFIKDGGRIYIGEDAKSKLMETLTADGEFLTKLHLMDYSLLLGVHDCDKGDEE 288          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21103.6421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVE7_9PHAE2.040e-4592.77PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLT5_ECTSI1.130e-4392.77PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC9_ECTSI8.830e-2764.29PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE1.290e-2462.07PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMY7_9PHAE8.870e-2157.69PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1S3HUG5_LINUN2.140e-1145.24phosphatidylinositol 5-phosphate 4-kinase type-2 a... [more]
A0A0G4I8B7_9ALVE3.190e-1148.00PIPK domain-containing protein n=1 Tax=Chromera ve... [more]
A0A813V668_9BILA1.010e-1045.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A3M6VEU7_9STRA1.080e-1044.44PIPK domain-containing protein n=1 Tax=Peronospora... [more]
UPI001604D6D11.920e-1041.18phosphatidylinositol 5-phosphate 4-kinase type-2 a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21103contigL-elsbetiae_contig21103:102..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog2880.D8LLT5
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.7185957-CDS-L-elsbetiae_contig21103:101..2541622815865.7185957-CDS-L-elsbetiae_contig21103:101..254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21103 102..254 +
1691683155.0873218-CDS-L-elsbetiae_contig21103:101..2541691683155.0873218-CDS-L-elsbetiae_contig21103:101..254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21103 102..254 +
1622815865.7301688-CDS-L-elsbetiae_contig21103:1011..11071622815865.7301688-CDS-L-elsbetiae_contig21103:1011..1107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21103 1012..1107 +
1691683155.1050959-CDS-L-elsbetiae_contig21103:1011..11071691683155.1050959-CDS-L-elsbetiae_contig21103:1011..1107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21103 1012..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21103.6421.1prot_L-elsbetiae_contig21103.6421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21103 102..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21103.6421.1

>prot_L-elsbetiae_contig21103.6421.1 ID=prot_L-elsbetiae_contig21103.6421.1|Name=mRNA_L-elsbetiae_contig21103.6421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
DTNKQIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLASQKAAFI
EVAKADAKFLCSVNVMDYSMLTCIHDSSRPADE
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mRNA from alignment at L-elsbetiae_contig21103:102..1107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21103.6421.1 ID=mRNA_L-elsbetiae_contig21103.6421.1|Name=mRNA_L-elsbetiae_contig21103.6421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1006bp|location=Sequence derived from alignment at L-elsbetiae_contig21103:102..1107+ (Laminarionema elsbetiae ELsaHSoW15)
GACACGAACAAGCAGATCCACTCCAAGTACGACCTCAAAGGCTCCAGCCT CGGGCGGTCTGCGAAGGAGGGGGAGAAGGTGCTGAAGGACAACGACCTCG ACGTGAAGTACGGAAAGATTCACCTCGCCTCCCAGAAGGCTGCGTTTATT GAGGTAAATATGTATGTGTGTATGTCAGGTCTGTGTATTTAGTTGGCATG TAAATATCCCCGCAAACCTTCTTTTTAGCAGGCAGGTAGGTCATGGGTTC AAGCCCCGGCGTTTGCGACTTTTTTTCTCACAAACGGTGAGCTTTACGGT GGGTCTCTCCCCGATTACCTGTGTGTTTGCTTTTTACATACTGAGTTTTC CCTGGGTGCAGGGTCTGTGAGCTGGTGCTGGTCAAGCCACGCACTGGGAC CAGGCTTTTCAGGAGACTCTTTTCGGGCTGGCGACGCACGTGGCGACGTA CGCCAGTTCTGGCTCTTTAGTGCGACACGGCAACTCAGAGTGTTGCGCAA CTCGAACACAACAGCAGTCAACACTACTACTACTGTTCTCTTGCTTCACC CCCTGAATTGTTCGGTCATGAGCCACGTCTGAAAGCGGAACTTGTTCAGC TATATGCTTTTGACCTTGCCCGAGTTGTGGAAAGGGGAAGTGTTAATCTT GTTTTTGCAATATTTGAGGTGTTTCCCGAAAAGTCCTGACGCGCCACTCT TATTTCGCCCCCGAGGCTCGGTTCGTATTTCTCTACGGGGCGTCTTTTAT TTTGCACTGTAGGCTTTACCGTAATTAAGTGTTGTTAAAGGTTCTTTTTT ATCCGAGCGTCTCGAGCAAGCCTCATTCAAGTCCTCAACAACAACAATTT TCCTAAGTCGTGGTGGCGCCGTCTGTACCCCCCCCCCCCCCCAAACGCAA AAAAAAACAGGTTGCCAAGGCGGACGCCAAATTTCTGTGCAGCGTAAACG TGATGGACTACTCGATGCTGACCTGCATCCACGACTCCAGCAGACCCGCT GACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21103:102..1107+

>mRNA_L-elsbetiae_contig21103.6421.1 ID=mRNA_L-elsbetiae_contig21103.6421.1|Name=mRNA_L-elsbetiae_contig21103.6421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig21103:102..1107+ (Laminarionema elsbetiae ELsaHSoW15)
GACACGAACAAGCAGATCCACTCCAAGTACGACCTCAAAGGCTCCAGCCT
CGGGCGGTCTGCGAAGGAGGGGGAGAAGGTGCTGAAGGACAACGACCTCG
ACGTGAAGTACGGAAAGATTCACCTCGCCTCCCAGAAGGCTGCGTTTATT
GAGGACACGAACAAGCAGATCCACTCCAAGTACGACCTCAAAGGCTCCAG
CCTCGGGCGGTCTGCGAAGGAGGGGGAGAAGGTGCTGAAGGACAACGACC
TCGACGTGAAGTACGGAAAGATTCACCTCGCCTCCCAGAAGGCTGCGTTT
ATTGAGGTTGCCAAGGCGGACGCCAAATTTCTGTGCAGCGTAAACGTGAT
GGACTACTCGATGCTGACCTGCATCCACGACTCCAGCAGACCCGCTGACG
AGGTTGCCAAGGCGGACGCCAAATTTCTGTGCAGCGTAAACGTGATGGAC
TACTCGATGCTGACCTGCATCCACGACTCCAGCAGACCCGCTGACGAG
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