mRNA_L-elsbetiae_contig211.6414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6414.1
Unique NamemRNA_L-elsbetiae_contig211.6414.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 296 bits (759), Expect = 1.020e-98
Identity = 138/229 (60.26%), Postives = 178/229 (77.73%), Query Frame = 1
Query:    1 SSKQISRDYDRYNPWFWIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYS-SKTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKY 684
            + K  +R YDR NPWFWID+ETS LD + S+VLEI +VVTD  L  WDSLHVVI+HP+NILMLKSS+WCK KFCS +YGGNGLFD C++S T++ DAT ++ NFFE+YS+HEIG+ +P   +R FFD+T GANG  LS +D+S    + + T     LL GSTV+FDR  +  HFP L+++L+HKN+DVT+LLETAKRF PD+++ KPKP+  HRA+DDILDS+ LYKY
Sbjct:    9 TKKVFNRGYDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEIGRGRPAHKSRTFFDRTSGANGMKLSPYDISCQVQNFTGTRRSQGLLAGSTVYFDRRIIEKHFPVLRKYLSHKNVDVTSLLETAKRFHPDLIENKPKPTMVHRAMDDILDSLTLYKY 237          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 272 bits (695), Expect = 3.620e-89
Identity = 132/232 (56.90%), Postives = 172/232 (74.14%), Query Frame = 1
Query:   16 SRDYDRYNPWFWIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIG--KEKPPELNRQFFDKTIGANGQNLSNFDVS---LSAYSSKTP----HRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKY 684
            ++ Y+RYNPWFWIDMETS LD + SEVLE+ +VVTD +L  WDSLH+VI+HP+NILMLKSS+WCK++FCS  YGGNGLFD C++S T++ DAT  +  FFE+Y +H+IG    +PP   R FFD+T G NG  LS    +   +    + TP     +  LL GSTV+FDR  + THFP L+++L+HKNIDVTT+LETAKRFRPD++  KPKP   HRA+DDI+DS+ LY+Y
Sbjct:    3 NKTYERYNPWFWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCTHRDIPKQCTTTPGGSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.010e-68
Identity = 108/234 (46.15%), Postives = 160/234 (68.38%), Query Frame = 1
Query:    7 KQISRDYDRYNPWFWIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPEL--NRQFFDKTIGANGQNLSNFDVSLSAYSS---KTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFRE 693
            K    DY+   PWFWIDMET+GLD + + +LEI +VVTD +L   DS+ +V++HP +IL+ +SS+WC+RKFC    GGNGLF+AC+FS  +  +A + +WNFF+ YS    G+    ++  ++ FFD+T+GANG  L   D S   +     ++ ++  LL GSTV+FDR FL+ +FP LK F +++ +DV+T LE  +R+RPD+  K P+ + +HRA DDILDSI+L K+F+E
Sbjct:   31 KTSKHDYENEFPWFWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKE 264          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.150e-34
Identity = 74/230 (32.17%), Postives = 121/230 (52.61%), Query Frame = 1
Query:   43 WFWIDMETSGLDPNASE--VLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYSSKT-------------PHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYF 687
            W ++D+E + LD  A    +LEI   + D ++   D+ HV++N P +I+   +S WCK++FCS   GGN LF  C+ S  T   A FML  F   ++     +    E  R+FF          L   D ++   +S+               H  ++L G +V+FDR  L+  +P L+  + HK I++++LLE A+++RPDIL   P     HRA+ D+L+S++L ++F
Sbjct:    9 WLFLDIECTQLDYQAHNFGILEIAAAIVDNSMEVIDTFHVIVNQPAHIIAA-ASKWCKKRFCSRLEGGNDLFAQCDASIITEAQAGFMLEQFIMKHAKERHMQPDEAEQKRRFFQAA------ELETIDAAIETETSEAFIEKDVEKTQGGISHFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWF 231          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.570e-29
Identity = 78/247 (31.58%), Postives = 123/247 (49.80%), Query Frame = 1
Query:   43 WFWIDMETSGLDPNASE--VLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGK-----EKPPELNRQFFDKT-----IGANGQNLSNFDVSLS---------AYSSKTPHRL------ILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFREQVF 702
            W W D+E +GLDP +    VLEI   VT  +L   D+ HV+I+ P  +L   +SSWC   F     GGN LF  C  S  +  +A  +L  F   ++     +     E P  + ++   KT     +  +G  ++  D+            AY    P         ++  G + +FDRG ++  FP+L++++ HK IDVT++LE  +R+RPD+L   P P  THRA+ D+L+SI L ++    +F
Sbjct:   22 WIWCDIECTGLDPTSPGFGVLEIAAAVTGDDLTVQDTFHVIIHQPDRVLA-GASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEVPEAVVKRNVFKTAEFGDVIEDGDAMAG-DIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRWVMTNLF 266          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A835ZEI1_9STRA (Ribonuclease H-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.180e-27
Identity = 74/246 (30.08%), Postives = 125/246 (50.81%), Query Frame = 1
Query:    4 SKQISRDYDRYNP-WFWIDMETSGLDPNASE--VLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHE---IGKEKPPELNRQF----FD--------KTIGANGQNLSNFDVSLSAYSSKTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYF 687
            S Q+    +RYN  W  +D+E + LD  + +  +LEI   V D  +   D+ HV+++    I+   SS WCK++F S   GGN LF  C  ST T E A  ML  F   ++       G E   +    F    F+        + +    + ++     +   S+   H  I+L G +V+FDR  L+  +P L+ ++ HK I++++LLE  +R+RPD+L   P     HRA+ D++++++L ++F
Sbjct:    4 SPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIG-NSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWF 248          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.190e-24
Identity = 72/246 (29.27%), Postives = 115/246 (46.75%), Query Frame = 1
Query:   43 WFWIDMETSGLDPNASE--VLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGK-----EKPPELNRQFFDKTI------------------GANGQNLSNFDVSLSAYSSKTPHRL-ILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFREQVF 702
            W W D+E +GLDP A    +LEI   +T  +L   D+ HVV++ P  +L   +S WC   F     GGN LF+    S  +   A  ML  F   ++     +     E P    ++   KT                   GA  Q         +   ++      ++  G + +FDRG ++  FP+L++++ HK IDVT++LE  +R+RPD+L   P P   HRA+ D+L+S+ L ++    +F
Sbjct:   33 WLWCDIECTGLDPAAPGFGILEIAAAITGDDLTVQDTFHVVVHQPPRVLA-GASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEGPEAACKRSMFKTAEFGDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRWVMTNLF 277          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A1F4BKQ9_9PROT (Oligoribonuclease n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BKQ9_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 6.060e-21
Identity = 69/219 (31.51%), Postives = 101/219 (46.12%), Query Frame = 1
Query:   37 NPWFWIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYSSKTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFRE 693
            N   WIDME SGLDP+A +VLE+ +VVTD  L       V++ H  + ++     W +      T+G +GL      ST T  D    L  F        +    PP+++                                   +CG++VH DR F+  H P+L+ F  ++N+DV+TL E AKR++PDI+    K    H A+ DI +SI   KY+RE
Sbjct:    6 NNLIWIDMEMSGLDPDADKVLEVAIVVTDSRLNTVAEGPVLVVHQPDAVLDAMDEWNRG-----THGKSGLTGRVKASTLTEADVEQRLVAF--------LAGHVPPKVSP----------------------------------MCGNSVHQDRRFMARHLPALEAFFLYRNLDVSTLKELAKRWKPDIMAGLVKHGK-HEALADIYESIEELKYYRE 176          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A2J8HFI5_VIBDI (Oligoribonuclease n=7 Tax=Vibrio TaxID=662 RepID=A0A2J8HFI5_VIBDI)

HSP 1 Score: 91.3 bits (225), Expect = 3.490e-19
Identity = 63/217 (29.03%), Postives = 99/217 (45.62%), Query Frame = 1
Query:   49 WIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYSSKTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFREQV 699
            WID+E +GLDP A +++EI  +VTD  L       V+  H     + K   WC     + T+ G+GL +    S+ T E A      F E +    + + K P                                      +CG+++  DR FL  H P L+ + +++ IDV+TL E  +R++P++LD   K  S H A+DDI +SI   KY+R+ +
Sbjct:   10 WIDLEMTGLDPEAHKIIEIATIVTDSQLNILAEGPVLAIHQPESELDKMDDWC-----TNTHTGSGLVERIRQSSVTEEQAVAQTIEFLEKW----VPRGKSP--------------------------------------ICGNSIGQDRRFLYKHMPELEEYFHYRYIDVSTLKELTRRWKPEVLDGFSKKGS-HLALDDIRESIAELKYYRQTI 178          
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Match: A0A3D2VBV5_9GAMM (Oligoribonuclease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D2VBV5_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 5.130e-19
Identity = 63/218 (28.90%), Postives = 95/218 (43.58%), Query Frame = 1
Query:   49 WIDMETSGLDPNASEVLEINVVVTDVNLVPWDSLHVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFMLWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYSSKTPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRPDILDKKPKPSSTHRAIDDILDSINLYKYFREQVF 702
            WID+E +GL+P A  ++EI  VVTD +L       V+  H    ++    +W +     TT+ G GL      S  T  +A     +F   +    +                                            LCG+++  DR FL  H P L+ FL+++N+DV+++ E A R+RP + D   K    HRA+DDIL+SI   KY+RE  F
Sbjct:    8 WIDLEMTGLNPQADRIIEIATVVTDADLNSLGRGPVLAVHQSEAVLSGMDNWNQ-----TTHSGTGLISRVRASAVTESEAETATLDFLRDHVKPGVSP------------------------------------------LCGNSICQDRRFLAQHMPRLESFLHYRNLDVSSIKELAIRWRPGLADGFVKQGG-HRALDDILESIEELKYYREHFF 177          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG6_9PHYC1.020e-9860.26Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
Q6XM84_9PHYC3.620e-8956.90FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPG5_ECTSI1.010e-6846.15EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
A0A835Z4U2_9STRA3.150e-3432.17Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A836CDV0_9STRA3.570e-2931.58Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEI1_9STRA2.180e-2730.08Ribonuclease H-like domain-containing protein n=2 ... [more]
A0A835YX31_9STRA2.190e-2429.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1F4BKQ9_9PROT6.060e-2131.51Oligoribonuclease n=1 Tax=Betaproteobacteria bacte... [more]
A0A2J8HFI5_VIBDI3.490e-1929.03Oligoribonuclease n=7 Tax=Vibrio TaxID=662 RepID=A... [more]
A0A3D2VBV5_9GAMM5.130e-1928.90Oligoribonuclease n=1 Tax=Gammaproteobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:33558..34271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue4.3e-55
Seed eggNOG ortholog2880.D8LPG5
Preferred nameREXO2
KEGG rclassRC00408
KEGG koko:K01179,ko:K01835,ko:K13288
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
EggNOG free text desc.RNA phosphodiester bond hydrolysis, exonucleolytic
EggNOG OGsCOG1949@1,KOG3242@2759
EC3.2.1.4,5.4.2.2
COG Functional cat.A
CAZyGH5,GH9
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Exons1
Model size714
Cds size714
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.3955996-CDS-L-elsbetiae_contig211:33557..342711622815865.3955996-CDS-L-elsbetiae_contig211:33557..34271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 33558..34271 +
1691683154.9118788-CDS-L-elsbetiae_contig211:33557..342711691683154.9118788-CDS-L-elsbetiae_contig211:33557..34271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 33558..34271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6414.1prot_L-elsbetiae_contig211.6414.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 33558..34271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6414.1

>prot_L-elsbetiae_contig211.6414.1 ID=prot_L-elsbetiae_contig211.6414.1|Name=mRNA_L-elsbetiae_contig211.6414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
SSKQISRDYDRYNPWFWIDMETSGLDPNASEVLEINVVVTDVNLVPWDSL
HVVINHPMNILMLKSSSWCKRKFCSTTYGGNGLFDACNFSTTTLEDATFM
LWNFFEFYSSHEIGKEKPPELNRQFFDKTIGANGQNLSNFDVSLSAYSSK
TPHRLILLCGSTVHFDRGFLVTHFPSLKRFLNHKNIDVTTLLETAKRFRP
DILDKKPKPSSTHRAIDDILDSINLYKYFREQVFDKI*
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mRNA from alignment at L-elsbetiae_contig211:33558..34271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6414.1 ID=mRNA_L-elsbetiae_contig211.6414.1|Name=mRNA_L-elsbetiae_contig211.6414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig211:33558..34271+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGTAAACAAATATCGAGGGATTACGATCGGTACAACCCATGGTTCTG GATTGATATGGAGACATCTGGGCTTGACCCCAACGCGTCCGAGGTACTCG AGATTAATGTCGTCGTCACCGACGTTAACCTCGTACCGTGGGACTCACTA CACGTTGTGATCAACCATCCTATGAATATTTTGATGTTGAAATCGTCTTC GTGGTGCAAACGAAAGTTTTGCTCCACGACCTATGGTGGGAACGGACTCT TTGACGCCTGCAATTTCTCAACGACAACACTCGAGGATGCGACATTTATG CTCTGGAACTTTTTTGAGTTTTACTCGTCACACGAAATAGGGAAAGAAAA ACCCCCCGAACTCAATCGACAGTTTTTTGACAAGACGATAGGAGCCAATG GGCAAAACCTGTCTAATTTCGACGTGTCCTTATCGGCGTATTCTTCCAAA ACTCCTCACAGGTTAATACTGTTATGTGGTTCAACCGTGCACTTCGACAG AGGATTTCTGGTTACTCATTTCCCGTCGCTCAAACGTTTCCTCAATCACA AGAATATTGACGTTACTACACTATTGGAAACAGCCAAACGTTTTAGGCCC GATATTTTGGACAAGAAACCTAAACCTTCGTCTACTCACCGTGCAATTGA CGATATCTTGGACTCCATCAACCTCTACAAGTACTTCAGGGAGCAAGTCT TCGACAAAATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:33558..34271+

>mRNA_L-elsbetiae_contig211.6414.1 ID=mRNA_L-elsbetiae_contig211.6414.1|Name=mRNA_L-elsbetiae_contig211.6414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig211:33558..34271+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGTAAACAAATATCGAGGGATTACGATCGGTACAACCCATGGTTCTG
GATTGATATGGAGACATCTGGGCTTGACCCCAACGCGTCCGAGGTACTCG
AGATTAATGTCGTCGTCACCGACGTTAACCTCGTACCGTGGGACTCACTA
CACGTTGTGATCAACCATCCTATGAATATTTTGATGTTGAAATCGTCTTC
GTGGTGCAAACGAAAGTTTTGCTCCACGACCTATGGTGGGAACGGACTCT
TTGACGCCTGCAATTTCTCAACGACAACACTCGAGGATGCGACATTTATG
CTCTGGAACTTTTTTGAGTTTTACTCGTCACACGAAATAGGGAAAGAAAA
ACCCCCCGAACTCAATCGACAGTTTTTTGACAAGACGATAGGAGCCAATG
GGCAAAACCTGTCTAATTTCGACGTGTCCTTATCGGCGTATTCTTCCAAA
ACTCCTCACAGGTTAATACTGTTATGTGGTTCAACCGTGCACTTCGACAG
AGGATTTCTGGTTACTCATTTCCCGTCGCTCAAACGTTTCCTCAATCACA
AGAATATTGACGTTACTACACTATTGGAAACAGCCAAACGTTTTAGGCCC
GATATTTTGGACAAGAAACCTAAACCTTCGTCTACTCACCGTGCAATTGA
CGATATCTTGGACTCCATCAACCTCTACAAGTACTTCAGGGAGCAAGTCT
TCGACAAAATATAATCCAGTAAACAAATATCGAGGGATTACGATCGGTAC
AACCCATGGTTCTGGATTGATATGGAGACATCTGGGCTTGACCCCAACGC
GTCCGAGGTACTCGAGATTAATGTCGTCGTCACCGACGTTAACCTCGTAC
CGTGGGACTCACTACACGTTGTGATCAACCATCCTATGAATATTTTGATG
TTGAAATCGTCTTCGTGGTGCAAACGAAAGTTTTGCTCCACGACCTATGG
TGGGAACGGACTCTTTGACGCCTGCAATTTCTCAACGACAACACTCGAGG
ATGCGACATTTATGCTCTGGAACTTTTTTGAGTTTTACTCGTCACACGAA
ATAGGGAAAGAAAAACCCCCCGAACTCAATCGACAGTTTTTTGACAAGAC
GATAGGAGCCAATGGGCAAAACCTGTCTAATTTCGACGTGTCCTTATCGG
CGTATTCTTCCAAAACTCCTCACAGGTTAATACTGTTATGTGGTTCAACC
GTGCACTTCGACAGAGGATTTCTGGTTACTCATTTCCCGTCGCTCAAACG
TTTCCTCAATCACAAGAATATTGACGTTACTACACTATTGGAAACAGCCA
AACGTTTTAGGCCCGATATTTTGGACAAGAAACCTAAACCTTCGTCTACT
CACCGTGCAATTGACGATATCTTGGACTCCATCAACCTCTACAAGTACTT
CAGGGAGCAAGTCTTCGACAAAATATAA
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