mRNA_L-elsbetiae_contig211.6410.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6410.1
Unique NamemRNA_L-elsbetiae_contig211.6410.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig211.6410.1 vs. uniprot
Match: B5LWH7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH7_9PHYC)

HSP 1 Score: 105 bits (262), Expect = 1.360e-26
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 1 
Query:    1 MRAPRNRRKKRKLRAFSKKTYSNAALTIQKCFRTFLLRRYEGLCMNWDDDECIMLRPVSSIPRGVLVVVDQVAFDSRDLLSWITRSRYHPLTRKPLTDRLKRLCIKKSTTFFER 342
            MR PR RR KR+ R  S + Y  +A  IQ+CF+T+L +RY  LC N++D ECI L PVS IPR VL+V+  V FD R+LL W+  S  +PLTR  L    + +C++K   F  R
Sbjct:    1 MRGPRLRRLKRRSRVHSGEKYEKSATAIQRCFQTYLAKRYAKLCRNYNDVECITLEPVSLIPRDVLIVIGGVGFDCRNLLQWLMTSNLNPLTRDVLPRDTRLVCLRKLHVFISR 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWH7_9PHYC1.360e-2647.37Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:26073..26465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815865.2614708-CDS-L-elsbetiae_contig211:26072..264651622815865.2614708-CDS-L-elsbetiae_contig211:26072..26465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 26073..26465 +
1691683154.8669748-CDS-L-elsbetiae_contig211:26072..264651691683154.8669748-CDS-L-elsbetiae_contig211:26072..26465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 26073..26465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6410.1prot_L-elsbetiae_contig211.6410.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 26073..26465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6410.1

>prot_L-elsbetiae_contig211.6410.1 ID=prot_L-elsbetiae_contig211.6410.1|Name=mRNA_L-elsbetiae_contig211.6410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MRAPRNRRKKRKLRAFSKKTYSNAALTIQKCFRTFLLRRYEGLCMNWDDD
ECIMLRPVSSIPRGVLVVVDQVAFDSRDLLSWITRSRYHPLTRKPLTDRL
KRLCIKKSTTFFERELGPNKKKKKGFYSRKR
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mRNA from alignment at L-elsbetiae_contig211:26073..26465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6410.1 ID=mRNA_L-elsbetiae_contig211.6410.1|Name=mRNA_L-elsbetiae_contig211.6410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=393bp|location=Sequence derived from alignment at L-elsbetiae_contig211:26073..26465+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGCGCCAAGGAATAGACGAAAGAAGAGAAAACTGAGGGCATTTTC
GAAGAAGACCTACTCGAATGCTGCACTCACTATTCAAAAATGTTTTCGTA
CATTCTTGTTAAGACGATACGAGGGATTATGTATGAACTGGGACGACGAT
GAATGTATAATGCTTCGACCTGTATCGAGTATCCCGCGCGGAGTTCTCGT
CGTTGTGGACCAGGTGGCTTTTGACTCGCGCGATCTTCTGTCGTGGATCA
CTAGGTCTCGCTACCACCCCTTGACTCGAAAACCTCTGACGGACCGATTG
AAACGTCTCTGTATTAAGAAGTCCACCACTTTCTTCGAGCGCGAACTGGG
GCCGAACAAGAAGAAAAAGAAGGGTTTTTATTCGCGAAAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig211:26073..26465+

>mRNA_L-elsbetiae_contig211.6410.1 ID=mRNA_L-elsbetiae_contig211.6410.1|Name=mRNA_L-elsbetiae_contig211.6410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig211:26073..26465+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGCGCCAAGGAATAGACGAAAGAAGAGAAAACTGAGGGCATTTTC
GAAGAAGACCTACTCGAATGCTGCACTCACTATTCAAAAATGTTTTCGTA
CATTCTTGTTAAGACGATACGAGGGATTATGTATGAACTGGGACGACGAT
GAATGTATAATGCTTCGACCTGTATCGAGTATCCCGCGCGGAGTTCTCGT
CGTTGTGGACCAGGTGGCTTTTGACTCGCGCGATCTTCTGTCGTGGATCA
CTAGGTCTCGCTACCACCCCTTGACTCGAAAACCTCTGACGGACCGATTG
AAACGTCTCTGTATTAAGAAGTCCACCACTTTCTTCGAGCGCGAACTGGG
GCCGAACAAGAAGAAAAAGAAGGGTTTTTATTCGCGAAAGAGGATGAGAG
CGCCAAGGAATAGACGAAAGAAGAGAAAACTGAGGGCATTTTCGAAGAAG
ACCTACTCGAATGCTGCACTCACTATTCAAAAATGTTTTCGTACATTCTT
GTTAAGACGATACGAGGGATTATGTATGAACTGGGACGACGATGAATGTA
TAATGCTTCGACCTGTATCGAGTATCCCGCGCGGAGTTCTCGTCGTTGTG
GACCAGGTGGCTTTTGACTCGCGCGATCTTCTGTCGTGGATCACTAGGTC
TCGCTACCACCCCTTGACTCGAAAACCTCTGACGGACCGATTGAAACGTC
TCTGTATTAAGAAGTCCACCACTTTCTTCGAGCGCGAACTGGGGCCGAAC
AAGAAGAAAAAGAAGGGTTTTTATTCGCGAAAGAGG
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