mRNA_L-elsbetiae_contig211.6402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig211.6402.1
Unique NamemRNA_L-elsbetiae_contig211.6402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6402.1 vs. uniprot
Match: Q6XLX9_9PHYC (FirrV-1-B57 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX9_9PHYC)

HSP 1 Score: 110 bits (276), Expect = 7.190e-29
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    7 SSSVRDIDNKFTSRMTRPDKMTGRPVNPFATASSRTAKSSAFE-DILRPEVTATTKLGTEYQGNIVDTKFEDVVRFDNYSIQTNPNAGHKLHTTSRMKVEHTREK 318
            SS+V DIDN F  R+TRPD+  GRPVNPFA  SS+T  S   E D LRPE+TA  KLGTEYQG +V+ +       + Y++Q NP AG KL+ T RM VEHTREK
Sbjct:   52 SSAVEDIDNTFFDRLTRPDRHVGRPVNPFAKISSQTVHSIVKESDALRPEITAFQKLGTEYQGRVVENRESGGNYLETYTVQHNPKAGLKLYATQRMPVEHTREK 156
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6402.1 vs. uniprot
Match: B5LWF6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF6_9PHYC)

HSP 1 Score: 108 bits (269), Expect = 2.670e-28
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    4 ASSSVRDIDNKFTSRMTRPDKMTG-RPVNPFATASSRTAKSSAFEDILRPEVTATTKLGTEYQGNIVDTKFEDV-VRFDNYSIQTNPNAGHKLHTTSRMKVEHTREK 318
            +SS+V DID KF  R++RPDK    RPVNPFA  SS T KS    D L+ EV+AT KLGTEYQG IV+    D  +  ++YS++ NP AG K+HTT+RM VEHTREK
Sbjct:   10 SSSAVHDIDAKFLDRLSRPDKAHSLRPVNPFARISSPTLKSIVSGDALKSEVSATAKLGTEYQGKIVEKSIGDGGLYLESYSVRDNPQAGKKIHTTNRMTVEHTREK 116
[Close]
BLAST of mRNA_L-elsbetiae_contig211.6402.1 vs. uniprot
Match: Q8QKW0_ESV1K (EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K)

HSP 1 Score: 80.5 bits (197), Expect = 1.680e-17
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   10 SSVRDIDNKFTSRMTRPDKMTG--RPVNPFATASSRTAKSSAFEDILRPEVTATTKLGTEYQGNIVDTKFEDVVRFDNYSIQTNPNAGHKLHTTSRMKVEHTREK 318
            S+V +I+  F  R+ +P    G  RPVNPFA+   +T+++   E  +R  VT    LG +Y+G + DTK +D VR D Y+I  NP     +H+TSR+KVEHTRE+
Sbjct:    3 SAVHEINTAFNQRL-KPVTGLGAARPVNPFASTGVQTSRTKRDEMTVRSSVTLPGTLGAQYKGKVFDTKNDDSVRLDTYTIAENPKRNITMHSTSRLKVEHTRER 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig211.6402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q6XLX9_9PHYC7.190e-2957.14FirrV-1-B57 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWF6_9PHYC2.670e-2857.01Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QKW0_ESV1K1.680e-1742.86EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig211contigL-elsbetiae_contig211:9582..9902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-47
Ec32 orthologEc-06_006320.1
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.9573941-CDS-L-elsbetiae_contig211:9581..99021622815864.9573941-CDS-L-elsbetiae_contig211:9581..9902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 9582..9902 -
1691683154.740989-CDS-L-elsbetiae_contig211:9581..99021691683154.740989-CDS-L-elsbetiae_contig211:9581..9902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig211 9582..9902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig211.6402.1prot_L-elsbetiae_contig211.6402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig211 9582..9902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig211.6402.1

>prot_L-elsbetiae_contig211.6402.1 ID=prot_L-elsbetiae_contig211.6402.1|Name=mRNA_L-elsbetiae_contig211.6402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MASSSVRDIDNKFTSRMTRPDKMTGRPVNPFATASSRTAKSSAFEDILRP
EVTATTKLGTEYQGNIVDTKFEDVVRFDNYSIQTNPNAGHKLHTTSRMKV
EHTREK*
back to top

mRNA from alignment at L-elsbetiae_contig211:9582..9902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig211.6402.1 ID=mRNA_L-elsbetiae_contig211.6402.1|Name=mRNA_L-elsbetiae_contig211.6402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig211:9582..9902- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCGTCCTCGGTTCGAGACATTGATAACAAGTTCACGTCGAGGAT
GACCAGACCAGACAAAATGACCGGGCGGCCCGTCAATCCATTCGCAACCG
CCTCCTCAAGGACGGCAAAGAGTTCAGCATTCGAAGACATTTTGAGACCC
GAGGTCACCGCGACGACAAAACTCGGGACCGAATACCAGGGCAACATTGT
AGACACGAAGTTTGAAGACGTAGTCAGGTTTGACAACTACAGTATTCAAA
CCAACCCCAACGCCGGACACAAATTACACACGACCTCCAGGATGAAAGTC
GAACATACCAGGGAAAAATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig211:9582..9902-

>mRNA_L-elsbetiae_contig211.6402.1 ID=mRNA_L-elsbetiae_contig211.6402.1|Name=mRNA_L-elsbetiae_contig211.6402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig211:9582..9902- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCGTCCTCGGTTCGAGACATTGATAACAAGTTCACGTCGAGGAT
GACCAGACCAGACAAAATGACCGGGCGGCCCGTCAATCCATTCGCAACCG
CCTCCTCAAGGACGGCAAAGAGTTCAGCATTCGAAGACATTTTGAGACCC
GAGGTCACCGCGACGACAAAACTCGGGACCGAATACCAGGGCAACATTGT
AGACACGAAGTTTGAAGACGTAGTCAGGTTTGACAACTACAGTATTCAAA
CCAACCCCAACGCCGGACACAAATTACACACGACCTCCAGGATGAAAGTC
GAACATACCAGGGAAAAATGAATGGCTTCGTCCTCGGTTCGAGACATTGA
TAACAAGTTCACGTCGAGGATGACCAGACCAGACAAAATGACCGGGCGGC
CCGTCAATCCATTCGCAACCGCCTCCTCAAGGACGGCAAAGAGTTCAGCA
TTCGAAGACATTTTGAGACCCGAGGTCACCGCGACGACAAAACTCGGGAC
CGAATACCAGGGCAACATTGTAGACACGAAGTTTGAAGACGTAGTCAGGT
TTGACAACTACAGTATTCAAACCAACCCCAACGCCGGACACAAATTACAC
ACGACCTCCAGGATGAAAGTCGAACATACCAGGGAAAAATGA
back to top