mRNA_L-elsbetiae_contig2109.6394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2109.6394.1
Unique NamemRNA_L-elsbetiae_contig2109.6394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2109.6394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2109contigL-elsbetiae_contig2109:9833..10144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.3703032-CDS-L-elsbetiae_contig2109:9832..101441622815864.3703032-CDS-L-elsbetiae_contig2109:9832..10144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 9833..10144 +
1691683154.4081292-CDS-L-elsbetiae_contig2109:9832..101441691683154.4081292-CDS-L-elsbetiae_contig2109:9832..10144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2109 9833..10144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2109.6394.1prot_L-elsbetiae_contig2109.6394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2109 9833..10144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2109.6394.1

>prot_L-elsbetiae_contig2109.6394.1 ID=prot_L-elsbetiae_contig2109.6394.1|Name=mRNA_L-elsbetiae_contig2109.6394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
SSSTVHFDCCGEINAILASICLVEPPQKMGKCGDTSKYGYLFFNQGNLTH
RPIHPSYHLSHIEHLLGIREPSPTGPSFCLSLYPALSSALGTSIWSMFSL
SML*
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mRNA from alignment at L-elsbetiae_contig2109:9833..10144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2109.6394.1 ID=mRNA_L-elsbetiae_contig2109.6394.1|Name=mRNA_L-elsbetiae_contig2109.6394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig2109:9833..10144+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCGAGTACGGTACACTTTGACTGTTGTGGAGAGATCAACGCCATCCT
GGCATCAATCTGTCTTGTTGAGCCACCGCAAAAAATGGGAAAATGCGGCG
ATACTTCGAAGTATGGATATTTGTTCTTCAACCAAGGAAATCTAACGCAC
CGACCGATACACCCCTCTTACCATCTCTCTCATATTGAACACCTTCTTGG
CATACGGGAACCTAGTCCTACTGGCCCCTCTTTTTGTCTCTCTCTCTATC
CCGCTCTCTCCAGTGCATTGGGGACGAGTATCTGGTCTATGTTTAGTCTA
TCTATGCTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2109:9833..10144+

>mRNA_L-elsbetiae_contig2109.6394.1 ID=mRNA_L-elsbetiae_contig2109.6394.1|Name=mRNA_L-elsbetiae_contig2109.6394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig2109:9833..10144+ (Laminarionema elsbetiae ELsaHSoW15)
TCATCGAGTACGGTACACTTTGACTGTTGTGGAGAGATCAACGCCATCCT
GGCATCAATCTGTCTTGTTGAGCCACCGCAAAAAATGGGAAAATGCGGCG
ATACTTCGAAGTATGGATATTTGTTCTTCAACCAAGGAAATCTAACGCAC
CGACCGATACACCCCTCTTACCATCTCTCTCATATTGAACACCTTCTTGG
CATACGGGAACCTAGTCCTACTGGCCCCTCTTTTTGTCTCTCTCTCTATC
CCGCTCTCTCCAGTGCATTGGGGACGAGTATCTGGTCTATGTTTAGTCTA
TCTATGCTGTAGTCATCGAGTACGGTACACTTTGACTGTTGTGGAGAGAT
CAACGCCATCCTGGCATCAATCTGTCTTGTTGAGCCACCGCAAAAAATGG
GAAAATGCGGCGATACTTCGAAGTATGGATATTTGTTCTTCAACCAAGGA
AATCTAACGCACCGACCGATACACCCCTCTTACCATCTCTCTCATATTGA
ACACCTTCTTGGCATACGGGAACCTAGTCCTACTGGCCCCTCTTTTTGTC
TCTCTCTCTATCCCGCTCTCTCCAGTGCATTGGGGACGAGTATCTGGTCT
ATGTTTAGTCTATCTATGCTGTAG
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