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Homology
BLAST of mRNA_L-elsbetiae_contig2108.6390.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI) HSP 1 Score: 182 bits (462), Expect = 8.800e-48 Identity = 117/218 (53.67%), Postives = 135/218 (61.93%), Query Frame = 2
Query: 2 PTAVWNLVPPGSPPSGPALHIQARNKPFALIKGLEQPRGPDYFQMEKFRRPSGSHGDGGHRRGAGGAGA--------------------FANSGERQQPSRFACGDALQTPTEAPPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASSIGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEV-VGRGLSRFKTLAQTTQ 592
P AVWNLVPPG PPSGPALH QA+N+PFAL+K LE PRGPDYF ME FRRP D R GA G GA AN+ Q S L TPT P GRGMASFS ALS+AS+T++TP +QTQQ+P GFS+FGGKA+STPAS S + PLSSHTPI ++T + + YG GG VG GL+RFKTL Q TQ
Sbjct: 7 PEAVWNLVPPGRPPSGPALHTQAKNRPFALLKSLEPPRGPDYFPMENFRRPLWPDDD---RVGASGIGAGXXXXXXXXXXTASDRHISQAANARTSQHSSPH-----LHTPTSGPRGTGRGMASFSPALSRASTTMMTPVQQTQQKPEGFSMFGGKAYSTPASHGSICS--QPPLSSHTPIGSNTPTVAPGTIPYGGGGSSGVGGGLARFKTLVQETQ 214
BLAST of mRNA_L-elsbetiae_contig2108.6390.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE) HSP 1 Score: 137 bits (345), Expect = 2.710e-32 Identity = 104/216 (48.15%), Postives = 127/216 (58.80%), Query Frame = 2
Query: 134 MEKFRRPS------------GSHGDGGHRRGAGGAG------AFANSGERQQPSRFACGDALQTPTEAPPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASSIGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEV-VGRGLSRFKTLAQTTQEED-EREQNRRHGLVDDSSETVNHTAIAARGMTLPSAG-LSPDS 718
MEKFRRP G+ G+ GH +G G A +FAN+ Q S F L TPT P G GM SFS ALS+ASST++TP +QTQQQPGGFS+FGGKA+STPAS S + PLSSHTPID++T + + YG GG VG GL+RFKTLAQ TQEED +++Q RR G +S RGM PS+ L+P S
Sbjct: 1 MEKFRRPLWPDDHRFGASGIGAGGERGHGKGPGTASDRHISQSFANARTSQHSSPF-----LHTPTSGPRGTGGGMVSFSPALSRASSTMMTPVQQTQQQPGGFSMFGGKAYSTPASHGSISS--QPPLSSHTPIDSNTRTVAPGTIPYGSGGSSGVGGGLARFKTLAQETQEEDHKKQQERRGGSGRGNSSGCGIRDSTVRGMPSPSSNFLAPSS 209
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 110.9 |
| Seed ortholog evalue | 6.8e-22 |
| Seed eggNOG ortholog | 2880.D7FK42 |
| Preferred name | POL1A |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K02335,ko:K02349 |
| KEGG Reaction | R00375,R00376,R00377,R00378 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | plastid DNA replication |
| EggNOG OGs | COG0749@1,KOG0950@2759 |
| EC | 2.7.7.7 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
| Exons | 2 |
| Model size | 978 |
| Cds size | 594 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815864.2437942-UTR-L-elsbetiae_contig2108:989..1240 | 1622815864.2437942-UTR-L-elsbetiae_contig2108:989..1240 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 990..1240 - |
| 1691683154.3232539-UTR-L-elsbetiae_contig2108:989..1240 | 1691683154.3232539-UTR-L-elsbetiae_contig2108:989..1240 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 990..1240 - |
| 1622815864.2649367-UTR-L-elsbetiae_contig2108:1834..1900 | 1622815864.2649367-UTR-L-elsbetiae_contig2108:1834..1900 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 1835..1900 - |
| 1691683154.3493593-UTR-L-elsbetiae_contig2108:1834..1900 | 1691683154.3493593-UTR-L-elsbetiae_contig2108:1834..1900 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 1835..1900 - |
| 1622815864.2750635-UTR-L-elsbetiae_contig2108:2608..2675 | 1622815864.2750635-UTR-L-elsbetiae_contig2108:2608..2675 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 2609..2675 - |
| 1691683154.3651135-UTR-L-elsbetiae_contig2108:2608..2675 | 1691683154.3651135-UTR-L-elsbetiae_contig2108:2608..2675 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2108 2609..2675 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815864.2551851-CDS-L-elsbetiae_contig2108:1240..1834 | 1622815864.2551851-CDS-L-elsbetiae_contig2108:1240..1834 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2108 1241..1834 - |
| 1691683154.3395264-CDS-L-elsbetiae_contig2108:1240..1834 | 1691683154.3395264-CDS-L-elsbetiae_contig2108:1240..1834 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2108 1241..1834 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2108.6390.1 >prot_L-elsbetiae_contig2108.6390.1 ID=prot_L-elsbetiae_contig2108.6390.1|Name=mRNA_L-elsbetiae_contig2108.6390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MEKFRRPSGSHGDGGHRRGAGGAGAFANSGERQQPSRFACGDALQTPTEA
PPTGGRGMASFSTALSQASSTLLTPQRQTQQQPGGFSLFGGKAHSTPASS
IGTGSDRRLPLSSHTPIDNSTAASSRAGMAYGVGGEVVGRGLSRFKTLAQ
TTQEEDEREQNRRHGLVDDSSETVNHTAIAARGMTLPSAGLSPDSAG* back to topmRNA from alignment at L-elsbetiae_contig2108:990..2675- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig2108.6390.1 ID=mRNA_L-elsbetiae_contig2108.6390.1|Name=mRNA_L-elsbetiae_contig2108.6390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig2108:990..2675- (Laminarionema elsbetiae ELsaHSoW15)
GCCGACGGCCGTGTGGAACCTTGTTCCACCCGGGAGTCCACCCTCAGGCC
CGGCTCTTCATATCCAGGTGACTAGTATTTGCATTGTCGTGTTTCGTCTG
CCCGTACCATCCATCTGTTTTCTGTAACATCGCGCATTCCGTTCTTCGGC
AACGGTGAGCTCGACAGGGTCGAGCTCCAGTTCGTGCATAGGACTTGTGA
CGCCTTCCAGGATAGTCTGGGCTTGCTTCCGGCACGCTGTAAGTGTAATT
TCTGCGCGATCTTTTACCGGAGGGTATATGTATTTCTCCGATGGCGACCA
GTTTTCCAAAAGCATATCGGACCGTTTTGTAAGTTATCTTCCTTGTTTTC
ACGCAGCCCTACCCGTAGCCTTCTGTCATCATTGAGGGCGACGATCAAAA
TGCCCTCGGAAACACAAGTTTAAAGGCTTTTTTGATTGGTCTAAAGCAGG
CTGCTGTGTGAAGTCCATGCGACTATCTTGCGAGTCTTTGGCCTTCATTA
TGGAGATCGAGCCTCACGTCTTGGTGGGTCGCCGTCCTAAATAAAGTCTT
CCAGTGTTGTGAGCAGTACATGATCGGGCAGCACACGAGCCAAGGGACTG
TGAAGGCTTTTGACCTTCGATCTTCCTCTATCAAATTTCCCCCACACTTG
CAGCTCACGTGTACCTCGGTTGAAATACCCACTGCGAACGGTCTTCTCTT
GCCGTGCCAATGCGGTTAACTTTGACTCACGTGGAACGTTTTGACCTGAC
ACATTGTTCCAACCGAAAACTTCAGGCAAGAAACAAGCCTTTTGCGCTCA
TCAAGGGCCTCGAACAACCGAGAGGCCCCGACTACTTTCAGATGGAGAAG
TTCCGCAGACCCTCGGGTTCGCACGGCGATGGTGGTCATAGACGTGGTGC
CGGTGGCGCAGGAGCTTTCGCGAACAGCGGTGAACGCCAGCAGCCTTCTC
GTTTCGCTTGCGGCGATGCTCTTCAAACTCCCACCGAAGCGCCGCCCACG
GGAGGGAGAGGAATGGCCTCTTTCAGTACCGCGTTGTCCCAGGCGTCGTC
GACATTGTTGACGCCGCAGCGGCAGACGCAGCAGCAGCCGGGCGGGTTTA
GTCTTTTCGGCGGGAAAGCGCATTCTACACCCGCCAGCAGCATCGGCACC
GGAAGTGATCGGCGACTACCATTGTCTTCGCATACCCCGATCGACAACAG
CACGGCTGCTTCTTCTCGTGCCGGGATGGCATACGGCGTTGGCGGTGAAG
TTGTTGGCCGCGGATTGTCCCGGTTCAAGACGCTGGCGCAGACAACGCAG
GAGGAGGACGAGAGAGAGCAGAATCGAAGGCATGGCCTCGTTGACGACAG
CAGCGAAACTGTGAACCACACCGCTATCGCCGCCCGAGGAATGACTTTGC
CCTCTGCGGGCCTTTCCCCCGACTCCGCGGGATGACTCGGCCGTCGCCCG
GTTTGGTGGTCTTCAAGCCTTCACCACTCCTTCGCCATCGTCTTTCGCCG
CCAATGGCCCCTCAACCCCGGCAGAAGCAACAAGGAAACGGCCAAGAGCT
CCAACCATGGCCGCAGCTGCTGCACGGCCGTCAATCTCGGGGGCATTGCT
TTCAACACCGATGGGCGAAGGGGGGCGTGGCGGTGGCGCTGTTCCGGTGG
CAAGGACATGGGGTGGCATGATGGACGCCAGCCGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig2108:990..2675- >mRNA_L-elsbetiae_contig2108.6390.1 ID=mRNA_L-elsbetiae_contig2108.6390.1|Name=mRNA_L-elsbetiae_contig2108.6390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig2108:990..2675- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAAGTTCCGCAGACCCTCGGGTTCGCACGGCGATGGTGGTCATAG
ACGTGGTGCCGGTGGCGCAGGAGCTTTCGCGAACAGCGGTGAACGCCAGC
AGCCTTCTCGTTTCGCTTGCGGCGATGCTCTTCAAACTCCCACCGAAGCG
CCGCCCACGGGAGGGAGAGGAATGGCCTCTTTCAGTACCGCGTTGTCCCA
GGCGTCGTCGACATTGTTGACGCCGCAGCGGCAGACGCAGCAGCAGCCGG
GCGGGTTTAGTCTTTTCGGCGGGAAAGCGCATTCTACACCCGCCAGCAGC
ATCGGCACCGGAAGTGATCGGCGACTACCATTGTCTTCGCATACCCCGAT
CGACAACAGCACGGCTGCTTCTTCTCGTGCCGGGATGGCATACGGCGTTG
GCGGTGAAGTTGTTGGCCGCGGATTGTCCCGGTTCAAGACGCTGGCGCAG
ACAACGCAGGAGGAGGACGAGAGAGAGCAGAATCGAAGGCATGGCCTCGT
TGACGACAGCAGCGAAACTGTGAACCACACCGCTATCGCCGCCCGAGGAA
TGACTTTGCCCTCTGCGGGCCTTTCCCCCGACTCCGCGGGATGAATGGAG
AAGTTCCGCAGACCCTCGGGTTCGCACGGCGATGGTGGTCATAGACGTGG
TGCCGGTGGCGCAGGAGCTTTCGCGAACAGCGGTGAACGCCAGCAGCCTT
CTCGTTTCGCTTGCGGCGATGCTCTTCAAACTCCCACCGAAGCGCCGCCC
ACGGGAGGGAGAGGAATGGCCTCTTTCAGTACCGCGTTGTCCCAGGCGTC
GTCGACATTGTTGACGCCGCAGCGGCAGACGCAGCAGCAGCCGGGCGGGT
TTAGTCTTTTCGGCGGGAAAGCGCATTCTACACCCGCCAGCAGCATCGGC
ACCGGAAGTGATCGGCGACTACCATTGTCTTCGCATACCCCGATCGACAA
CAGCACGGCTGCTTCTTCTCGTGCCGGGATGGCATACGGCGTTGGCGGTG
AAGTTGTTGGCCGCGGATTGTCCCGGTTCAAGACGCTGGCGCAGACAACG
CAGGAGGAGGACGAGAGAGAGCAGAATCGAAGGCATGGCCTCGTTGACGA
CAGCAGCGAAACTGTGAACCACACCGCTATCGCCGCCCGAGGAATGACTT
TGCCCTCTGCGGGCCTTTCCCCCGACTCCGCGGGATGA back to top
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